Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G08850 229 / 2e-68 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) AT1G35710 224 / 1e-66 Protein kinase family protein with leucine-rich repeat domain (.1) AT1G17230 146 / 2e-39 Leucine-rich receptor-like protein kinase family protein (.1) AT4G20140 146 / 2e-39 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT5G44700 145 / 4e-39 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1) AT3G49670 140 / 1e-37 BAM2 BARELY ANY MERISTEM 2, Leucine-rich receptor-like protein kinase family protein (.1) AT5G65700 137 / 2e-36 BAM1 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) AT1G55610 134 / 3e-35 BRL1 BRI1 like (.1.2) AT3G13380 134 / 3e-35 BRL3 BRI1-like 3 (.1) AT5G53890 132 / 1e-34 AtPSKR2 phytosylfokine-alpha receptor 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G037533 [exp] 468 / 3e-160 AT4G08850 620 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.013G029700 [exp] 466 / 5e-160 AT4G08850 587 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.013G036600 [exp] 453 / 2e-154 AT4G08850 578 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.013G037500 [exp] 434 / 1e-147 AT4G08850 551 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.019G059550 [exp] 322 / 6e-108 AT4G08850 429 / 1e-139 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.019G129400 [exp] 329 / 6e-106 AT4G08850 708 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.019G060650 [exp] 322 / 8e-106 AT4G08850 587 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.019G129100 [exp] 330 / 8e-105 AT1G35710 863 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.019G127200 [exp] 319 / 3e-104 AT4G08850 617 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020936 [exp] 239 / 3e-73 AT4G08850 793 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10020935 [exp] 238 / 8e-72 AT4G08850 1011 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10008712 [exp] 236 / 3e-71 AT4G08850 1009 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10002293 [exp] 213 / 1e-62 AT1G35710 781 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Lus10003612 [exp] 206 / 5e-60 AT1G35710 751 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Lus10019036 [exp] 180 / 3e-51 AT4G08850 891 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10005016 [exp] 154 / 2e-45 AT4G08850 268 / 5e-83 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10008229 [exp] 153 / 2e-45 AT4G08850 261 / 8e-81 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10004046 [exp] 161 / 2e-44 AT4G08850 773 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10031161 [exp] 159 / 5e-44 AT4G08850 710 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.013G037632.1 pacid=42812392 polypeptide=Potri.013G037632.1.p locus=Potri.013G037632 ID=Potri.013G037632.1.v4.1 annot-version=v4.1 ATGAACTTGTCTCACAACAAACTTTCCGGTTTGATTCCAACTGTTTATGTAGATTTGGTGAGCTTGACAACTCTAGACATCTCCTACAATGAACTAGAGG GCCCTATTCCCAAAATCAAAGGCTTCAATGAAGCTCCTTTAGAAGCTTTTATGAATAATAGTGGTCTCTGTGGAAATGTCAGTGGTCTAAAGCCTTGTAC ACTTCTTACAAGTAAGAGAAAGAGCAACAAAATTGTCATTTTGATTCTTTTTCCTCTCCTGGGCAGTCTACTTCTACTACTTACCATGGTTGGATGTTTA TACTTTCGCTACCAAACAAGTATAGAAAGAATCTCCTTTTTAGGAGAGCGACAAAGTCCACTCAGTTTTGCAGTACAGGGCTATGAGGAGGAGATCCTAC ATGAAACTATCATCCAGGCCACTAATAATTTCAACTCCAATAATTGTATAGGGAAAGGGGGGTACCGAATTGTTTATCGAGCCATGTTGCCAGCAGTTTA CGAGTTCATAGAAAGGGGAAGTTTGAAGATGAGTTTATCTAGCGAAGAACAGGCAATGGACTTGGATTGGAATAAAAGGCTTAATGTTGTTAAAGGAGTG GCCAATGCATTATCCTATTTGCACCATGATTGCTCGCCTCCAATCATTCATCGAGACATTTCCAGCAGCAATGTTCTTTTAGATTTGGAATACGAGGCTC ATGTTTCGGATTTTGGGACAGCTCGGCTCTTGATGCCTGACTCAACCAACTGGACCTCATTTGCTGGCACCTTCGGATACACAGCTCCAGAGCTAGCTTA CACAATGAGAGTGAACGAGAAGTGCGATGTCTAG
AA sequence Show only first row Show all	>Potri.013G037632.1 pacid=42812392 polypeptide=Potri.013G037632.1.p locus=Potri.013G037632 ID=Potri.013G037632.1.v4.1 annot-version=v4.1 MNLSHNKLSGLIPTVYVDLVSLTTLDISYNELEGPIPKIKGFNEAPLEAFMNNSGLCGNVSGLKPCTLLTSKRKSNKIVILILFPLLGSLLLLLTMVGCL YFRYQTSIERISFLGERQSPLSFAVQGYEEEILHETIIQATNNFNSNNCIGKGGYRIVYRAMLPAVYEFIERGSLKMSLSSEEQAMDLDWNKRLNVVKGV ANALSYLHHDCSPPIIHRDISSSNVLLDLEYEAHVSDFGTARLLMPDSTNWTSFAGTFGYTAPELAYTMRVNEKCDV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G08850			Leucine-rich repeat receptor-l...		Potri.013G037632 [exp]	0	1
AT4G08850			Leucine-rich repeat receptor-l...		Potri.013G029700 [exp]	1.00	0.9456
					Potri.015G068800 [exp]	2.23	0.8482
AT5G45160			Root hair defective 3 GTP-bind...		Potri.012G116700 [exp]	6.48	0.8370
AT4G08850			Leucine-rich repeat receptor-l...		Potri.013G037500 [exp]	10.58	0.8531
AT4G32300		SD2-5	S-domain-2 5 (.1)		Potri.011G004000 [exp]	12.64	0.8126
AT4G03500			Ankyrin repeat family protein ...		Potri.019G108501 [exp]	18.49	0.7949
AT3G50150			Plant protein of unknown funct...		Potri.019G108400 [exp]	25.09	0.7966
AT5G45160			Root hair defective 3 GTP-bind...		Potri.012G116210 [exp]	27.34	0.7975
AT5G10770			Eukaryotic aspartyl protease f...		Potri.018G014800 [exp]	28.33	0.8101
AT4G03500			Ankyrin repeat family protein ...		Potri.019G109150 [exp]	33.76	0.7801

Compare expression of checked genes

Potri.013G037632 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.