Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04870 954 / 0 SPC1, PDE181, ZDS SPONTANEOUS CELL DEATH 1, PIGMENT DEFECTIVE EMBRYO 181, zeta-carotene desaturase (.1.2) AT4G14210 246 / 6e-74 PDE226, PDS3 PIGMENT DEFECTIVE 226, phytoene desaturase 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G050700 [exp] 1101 / 0 AT3G04870 926 / 0.0 SPONTANEOUS CELL DEATH 1, PIGMENT DEFECTIVE EMBRYO 181, zeta-carotene desaturase (.1.2) Potri.014G148700 [exp] 247 / 6e-74 AT4G14210 940 / 0.0 PIGMENT DEFECTIVE 226, phytoene desaturase 3 (.1.2) Potri.002G235200 [exp] 213 / 2e-61 AT4G14210 899 / 0.0 PIGMENT DEFECTIVE 226, phytoene desaturase 3 (.1.2) Potri.004G177400 [exp] 66 / 4e-11 AT4G14210 79 / 2e-15 PIGMENT DEFECTIVE 226, phytoene desaturase 3 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015935 [exp] 1019 / 0 AT3G04870 954 / 0.0 SPONTANEOUS CELL DEATH 1, PIGMENT DEFECTIVE EMBRYO 181, zeta-carotene desaturase (.1.2) Lus10009190 [exp] 905 / 0 AT3G04870 854 / 0.0 SPONTANEOUS CELL DEATH 1, PIGMENT DEFECTIVE EMBRYO 181, zeta-carotene desaturase (.1.2) Lus10021967 [exp] 251 / 1e-75 AT4G14210 952 / 0.0 PIGMENT DEFECTIVE 226, phytoene desaturase 3 (.1.2) Lus10041260 [exp] 253 / 2e-75 AT4G14210 951 / 0.0 PIGMENT DEFECTIVE 226, phytoene desaturase 3 (.1.2) Lus10025080 [exp] 63 / 3e-10 AT4G14210 67 / 1e-11 PIGMENT DEFECTIVE 226, phytoene desaturase 3 (.1.2) Lus10024003 [exp] 43 / 0.0009 AT4G14210 64 / 1e-10 PIGMENT DEFECTIVE 226, phytoene desaturase 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF13450 [poplar] [flax] NAD_binding_8 NAD(P)-binding Rossmann-like domain
Representative CDS sequence Show only first row Show all	>Potri.013G037700.1 pacid=42811546 polypeptide=Potri.013G037700.1.p locus=Potri.013G037700 ID=Potri.013G037700.1.v4.1 annot-version=v4.1 ATGGCTTCTTTGATTCTTTTCCCTGCAAAATCTGTTACTGGAACTAGAAGTGAGACTAGCCCACCAGGGTTATTGTTCTCTGGTGGTGTTGGTCGTAGGC GGTCAGTGGTTCAGGTGGGATTCAGGAATCAAAGGTTGTTTACAGTTCGGTCTGCTTTGGATTCTTTGGAAACAAACGTATCTGATATGAGTGTTAATGC TCCGAAGGGGTTATTTCCACCAGAACCTGAACATTATAGGGGGCCGAAGCTGAAGGTGGCTATTATTGGAGCTGGGTTGGCAGGCATGTCAACTGCAGTG GAGCTATTGGATCAAGGCCATGAGGTGGACATATACGATTCAAGGTCTTTCATCGGTGGTAAAGTGGGTTCATTTGTTGATAGACGTGGAAACCATATTG AAATGGGACTTCATGTTTTCTTTGGTTGCTATAATAATCTTTTCCGTTTGATGAAGAAGGTGGGTGCAGATAAAAATCTGCTTGTGAAGGATCATACTCA CACATTTGTAAACAAGGGAGGTGAAATTGGTGAGCTTGATTTTCGGTTTCCAATTGGAGCTCCGTTGCATGGGATTAGTGCATTTTTGTCAACAAATCAG CTTAAGACTTATGATATAGCAAGAAATGCTATGGCGCTTGCCCTGAGTCCAGTTGTAAAGGCTCTTGTTGATCCCGATGGTGCATTGAGGGACATAAGGA AATTAGATAGTATCAGCTTCTCTGATTGGTTTTTGTCCAAAGGTGGAACACGCATGAGTATCCAAAGAATGTGGGATCCTGTTGCTTATGCCCTTGGGTT TATTGACTGTGATAACATCAGTGCTCGGTGCATGCTGACCATATTCTCATTGTTTGCCACCAAGACAGAGGCTTCTTTACTTCGTATGCTCAAGGGTTCT CCAGATGTTTACTTGAGTGGTCCCATTAGAAAGTATATCGAAGATAAAGGTGGCAGGTTTCATTTGAGGTGGGGATGCAGACAGATAATTTATGATAGAT CACTAGATGGAGAAATACATGTCACAGGACTTGCCTTGTCGAAGGCTACAGATAAGAAAGTTGTAACAGCTGATGCTTATGTTGCAGCTTGTGATGTCCC TGGAATTAAAAGACTACTTCCGTCCCAGTGGAGGGAATCAAAATTCTTTGATAATATTTATGAGCTAGTGGGAGTACCTGTTGTGACAGTACAACTTAGA TACAATGGCTGGGTTACAGAGTTGCAGGATCTAGAACAATCAAGGCAGTTGCGACAAGCTACTGGCTTAGATAACCTCCTGTACACTCCAGATGCAGATT TTTCTTGTTTTGCTGACCTAGCACTCACTTCTCCAGAAGATTACTACATTGAAGGACAAGGTTCATTGCTCCAATGTGTTCTGACACCAGGAGATCCTTA CATGCCCTTGACAAATGATAAAATCATAGAGAGAGTTTCAAAGCAGGTCCTGGCTTTATTCCCGTCATCCCAAGGTCTAGAAGTAACCTGGTCATCCGTT GTAAAAATTGCACAATCTTTGTATCGTGAAGGACCTGGCAAAGATCCCTTTAGACCTGATCAGAGGACACCTGTGAAGAATTTCTTCCTTGCTGGTTCAT ATACAAAACAGGATTACATAGACAGCATGGAAGGAGCGACCTTGTCCGGAAGACAAGCTTCAGCATATGTATGCGGTGCTGGGGAAGAGTTAGTAGCTTT GAGGAAGACACTCGCAGCTGTCGAATCTCAAGATGGCACAAAATCTCAAAATTTAATTGATGAGCTCAGTCTTGTATGA
AA sequence Show only first row Show all	>Potri.013G037700.1 pacid=42811546 polypeptide=Potri.013G037700.1.p locus=Potri.013G037700 ID=Potri.013G037700.1.v4.1 annot-version=v4.1 MASLILFPAKSVTGTRSETSPPGLLFSGGVGRRRSVVQVGFRNQRLFTVRSALDSLETNVSDMSVNAPKGLFPPEPEHYRGPKLKVAIIGAGLAGMSTAV ELLDQGHEVDIYDSRSFIGGKVGSFVDRRGNHIEMGLHVFFGCYNNLFRLMKKVGADKNLLVKDHTHTFVNKGGEIGELDFRFPIGAPLHGISAFLSTNQ LKTYDIARNAMALALSPVVKALVDPDGALRDIRKLDSISFSDWFLSKGGTRMSIQRMWDPVAYALGFIDCDNISARCMLTIFSLFATKTEASLLRMLKGS PDVYLSGPIRKYIEDKGGRFHLRWGCRQIIYDRSLDGEIHVTGLALSKATDKKVVTADAYVAACDVPGIKRLLPSQWRESKFFDNIYELVGVPVVTVQLR YNGWVTELQDLEQSRQLRQATGLDNLLYTPDADFSCFADLALTSPEDYYIEGQGSLLQCVLTPGDPYMPLTNDKIIERVSKQVLALFPSSQGLEVTWSSV VKIAQSLYREGPGKDPFRPDQRTPVKNFFLAGSYTKQDYIDSMEGATLSGRQASAYVCGAGEELVALRKTLAAVESQDGTKSQNLIDELSLV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G04870		SPC1, PDE181, Z...	SPONTANEOUS CELL DEATH 1, PIGM...		Potri.013G037700 [exp]	0	1
AT3G48480			Cysteine proteinases superfami...		Potri.010G180300 [exp]	3.46	0.9131
AT1G22430			GroES-like zinc-binding dehydr...		Potri.018G142700 [exp]	6.70	0.9090	HNL.4
AT2G03390			uvrB/uvrC motif-containing pro...		Potri.010G161600 [exp]	7.21	0.9249
AT5G53580		AtPLR1	pyridoxal reductase 1, NAD(P)-...		Potri.015G006900 [exp]	9.48	0.9192
AT3G03620			MATE efflux family protein (.1...		Potri.013G069600 [exp]	10.95	0.9139
AT5G03570		FPN2, ATIREG2	FERROPORTIN 2, ARABIDOPSIS THA...		Potri.016G128600 [exp]	10.95	0.8837
AT3G54960		ATPDI1, ATPDIL1...	ARABIDOPSIS THALIANA PROTEIN D...		Potri.008G040100 [exp]	11.31	0.8937
AT2G41705			camphor resistance CrcB family...		Potri.005G174600 [exp]	14.42	0.9145
AT5G13030			unknown protein		Potri.001G013900 [exp]	14.49	0.8915
AT2G42130			Plastid-lipid associated prote...		Potri.016G045900 [exp]	15.23	0.9095

Compare expression of checked genes

Potri.013G037700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.