Plant FIBer expression Database

Potri.013G037900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G050800
[exp]
113 / 1e-31 ND /
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10015934
[exp]
64 / 1e-11 AT2G27410 48 / 3e-06 Domain of unknown function (DUF313) (.1)
PFAM info
Representative CDS sequence
>Potri.013G037900.2 pacid=42812368 polypeptide=Potri.013G037900.2.p locus=Potri.013G037900 ID=Potri.013G037900.2.v4.1 annot-version=v4.1
ATGATGAATCATGAGTGCTGTCTAGTTATGGATGCATGGATAAGGGAAGCACAAGAGACAACAAAGTTGGTGGAGGACATAGAAAGCAGAATAAAGAACA
AAGACTTAGCCGAAGAAAATAGGCTCAGAGACATTGCTCAATCGAAGCTAATTGAAGCTGGAGTCAAGCTTGATCGCCTTGAATCACTCCTTCATAACCC
ACCTTCAAAGCCTGCCTTAACTATAGAAGATTCGGAATTTCGATGGAAAATGATATCGGATTTACAGCTAAGAACACGAGCACTGGCTCTCCGTCTCTAT
ACATCAACAAAGAGGGCAGGAGGTTTTCTGGTTTCAACTACCACTGGAACCAGTAGAACAACCAACAGCCTTGATCAAGATCAGAAAAGGAAGTTGCACT
CCAAATTCGATCCAGAGCTGCTCACGCTGCTTACTGCTTTTGACACTTTCATGCTGGTTCTGCTCCTCCTTGCAGTCAGAGGATACAACCCAAGATCAAG
TGCAGTTCAAGAATTCTGGTTCTTTTATTTCAACAAGTTTAATCAAGAAGGTGTGCTGGACCTTCTGTTTGATTCTTGGAGCAGCTGCACTGCTATTTGT
CTTGGTTATAATCTGCGCAGTAATATAATCTACATACTCTGCCTATTGGTTTGCTATTATAGTTTCCTCTTTACAACTTCGGAGCTGCAAGCTTTTTCAT
TCTATCAGAAAAGTCCCAATATTTCCTTCATGTAA
AA sequence
>Potri.013G037900.2 pacid=42812368 polypeptide=Potri.013G037900.2.p locus=Potri.013G037900 ID=Potri.013G037900.2.v4.1 annot-version=v4.1
MMNHECCLVMDAWIREAQETTKLVEDIESRIKNKDLAEENRLRDIAQSKLIEAGVKLDRLESLLHNPPSKPALTIEDSEFRWKMISDLQLRTRALALRLY
TSTKRAGGFLVSTTTGTSRTTNSLDQDQKRKLHSKFDPELLTLLTAFDTFMLVLLLLAVRGYNPRSSAVQEFWFFYFNKFNQEGVLDLLFDSWSSCTAIC
LGYNLRSNIIYILCLLVCYYSFLFTTSELQAFSFYQKSPNISFM

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.013G037900
[exp]
0 1
AT4G39870 TLD-domain containing nucleola... Potri.005G075800
[exp]
2.44 0.8206
AT2G38550 Transmembrane proteins 14C (.1... Potri.006G108700
[exp]
6.63 0.8022
AT1G27070 5'-AMP-activated protein kinas... Potri.008G194300
[exp]
6.92 0.8014
AT5G22040 unknown protein Potri.008G015500
[exp]
8.06 0.8169
AT5G18810 SCL28, At-SCL28 SC35-like splicing factor 28 (... Potri.008G196700
[exp]
10.58 0.8000
AT3G59670 unknown protein Potri.005G144800
[exp]
10.90 0.8145
AT5G13020 AtEML3, ACK1 EMSY-like 3, Emsy N Terminus (... Potri.001G013800
[exp]
12.00 0.7877
AT1G04550 AUX_IAA BDL, IAA12 indole-3-acetic acid inducible... Potri.018G127800
[exp]
12.04 0.7736
AT2G27110 FAR1_related FRS3 FAR1-related sequence 3 (.1.2.... Potri.012G097200
[exp]
14.00 0.8181
AT5G06810 Mitochondrial transcription te... Potri.016G048300
[exp]
14.83 0.7858

Potri.013G037900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.