Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G56750 461 / 8e-164 NDL1 N-MYC downregulated-like 1 (.1) AT5G11790 460 / 2e-163 NDL2 N-MYC downregulated-like 2 (.1) AT2G19620 443 / 9e-157 NDL3 N-MYC downregulated-like 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G067700 [exp] 476 / 1e-169 AT5G56750 552 / 0.0 N-MYC downregulated-like 1 (.1) Potri.006G230800 [exp] 474 / 1e-168 AT5G56750 524 / 0.0 N-MYC downregulated-like 1 (.1) Potri.018G054900 [exp] 467 / 6e-166 AT5G11790 516 / 0.0 N-MYC downregulated-like 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001786 [exp] 564 / 0 AT5G56750 465 / 4e-165 N-MYC downregulated-like 1 (.1) Lus10020241 [exp] 525 / 0 AT5G56750 431 / 1e-151 N-MYC downregulated-like 1 (.1) Lus10026433 [exp] 378 / 4e-131 AT5G56750 456 / 2e-162 N-MYC downregulated-like 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF03096 [poplar] [flax] Ndr Ndr family
Representative CDS sequence Show only first row Show all	>Potri.013G038100.2 pacid=42811148 polypeptide=Potri.013G038100.2.p locus=Potri.013G038100 ID=Potri.013G038100.2.v4.1 annot-version=v4.1 ATGGGTGAGTCAAGTGACTCAGTTTCGGTGGATATTGACATGCTATCTTTTGGTGGGAAGGAGCATGTGGTGAAAACAAGCAGAGGTTCAATCTCTGTGT ATGTTTGTGGTGATCAAGAGAAGCCTGCTTTGATAACTTACCCTGATGTTGCTCTTAATTCTATGACTTGTTTCCAAGGTCTCTTATTTAGCCCTGATGC AGCTTCCTTGTTGCTCCATAACTTCTGCATATACCACATTGATGCCCCAGGGCACGAGTTGGGAGCTGATGTCATTTCTTCTGATGTTCCGTTACTTAGT GTTGATGACTTAGCAGACCAGGTTGCTGAAGTGCTTGATTTCTTCGGGCTGAAACAGGTTCTGTGCTTAGGCGTAATGGCTGGTGCTTACATCCTGACAC TTTTTACTATGAGATATCAAGAACGGGTGCTTGGGCTAATTCTTGTTTCCCCTGTTTGCAAGGCACCTTCATGGACTGAATGGTTTTACAATAAGGTGTT AATGAACTTGTTATACTTCTACGGAATGTGTGGAATATTGAAGGAATGCCTTCTCCAGCGTTACTTCAGTAAGGAAATTAGGTGCAGTGTGCAGGGCGCA GAAGCAGACATCATTCAAGCTTGTAGAAGGTTGCTGGATGAAAGAAAAAGTTTGAATGTAATGCGCTTTCTTCAAGCAATCAATGAGAGGTATGACCTTA CAGAGGACTTGGAGAATTTGCAGTGCAGGACACTTATTTTTGTGGGGGAAAGTAGTCAATTTCATGATGAATCAGTATACATGAGTACCAAAATGGGCAA GAAAACTTGTGCTCTTGTTGAGGTTGAAGCATGTGGTTCATTAGTCACAGAAGAGCACCCTTATGCCATGATAATTCCGATAGAGTTTTTTCTAATGGGG TTTGGGTACCACAGACAACCGTATTTTGCTTCCTCATCAAGTATTGGCTCCAACCCTACCAGTCCTTCAAGTCGCTGCTGTATAGCGCCGGAACTTCTCT CCCCTGAGAGTCTGGGTATCAAGCTCAAACCAATCAAAACCCGTGTAGACATTGATGTCAAAGTATGA
AA sequence Show only first row Show all	>Potri.013G038100.2 pacid=42811148 polypeptide=Potri.013G038100.2.p locus=Potri.013G038100 ID=Potri.013G038100.2.v4.1 annot-version=v4.1 MGESSDSVSVDIDMLSFGGKEHVVKTSRGSISVYVCGDQEKPALITYPDVALNSMTCFQGLLFSPDAASLLLHNFCIYHIDAPGHELGADVISSDVPLLS VDDLADQVAEVLDFFGLKQVLCLGVMAGAYILTLFTMRYQERVLGLILVSPVCKAPSWTEWFYNKVLMNLLYFYGMCGILKECLLQRYFSKEIRCSVQGA EADIIQACRRLLDERKSLNVMRFLQAINERYDLTEDLENLQCRTLIFVGESSQFHDESVYMSTKMGKKTCALVEVEACGSLVTEEHPYAMIIPIEFFLMG FGYHRQPYFASSSSIGSNPTSPSSRCCIAPELLSPESLGIKLKPIKTRVDIDVKV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G56750		NDL1	N-MYC downregulated-like 1 (.1...		Potri.013G038100 [exp]	0	1
AT5G64740		PRC1, IXR2, E11...	PROCUSTE 1, ISOXABEN RESISTANT...		Potri.005G087500 [exp]	1.73	0.8161	ATH.1
AT1G45688			unknown protein		Potri.002G124600 [exp]	6.32	0.8067
AT4G31060	AP2_ERF		Integrase-type DNA-binding sup...		Potri.006G080300 [exp]	29.69	0.8004
AT1G63640			P-loop nucleoside triphosphate...		Potri.003G127800 [exp]	32.98	0.7986
AT1G25350		OVA9	ovule abortion 9, glutamine-tR...		Potri.010G122932 [exp]	40.47	0.8002
AT3G23730		XTH16	xyloglucan endotransglucosylas...		Potri.002G236200 [exp]	42.98	0.7906	Pt-XTR7.2
AT2G36360			Galactose oxidase/kelch repeat...		Potri.008G024700 [exp]	49.48	0.7791
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Potri.006G110000 [exp]	49.63	0.7189
AT4G36440			unknown protein		Potri.007G019400 [exp]	50.46	0.7967
AT1G45207			Remorin family protein (.2)		Potri.002G125200 [exp]	52.96	0.7909

Compare expression of checked genes

Potri.013G038100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.