Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22780 197 / 1e-55 CPP ATTSO1, TSO1 CHINESE FOR 'UGLY', Tesmin/TSO1-like CXC domain-containing protein (.1) AT4G14770 184 / 4e-51 CPP ATTCX2 TESMIN/TSO1-like CXC 2 (.1) AT3G22760 168 / 7e-46 CPP SOL1 Tesmin/TSO1-like CXC domain-containing protein (.1) AT3G04850 147 / 4e-38 CPP Tesmin/TSO1-like CXC domain-containing protein (.1) AT4G29000 85 / 2e-17 CPP Tesmin/TSO1-like CXC domain-containing protein (.1) AT2G20110 77 / 1e-14 CPP Tesmin/TSO1-like CXC domain-containing protein (.1.2) AT5G25790 76 / 1e-14 CPP Tesmin/TSO1-like CXC domain-containing protein (.1) AT3G16160 62 / 3e-10 CPP Tesmin/TSO1-like CXC domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G051100 [exp] 692 / 0 AT4G14770 300 / 1e-90 TESMIN/TSO1-like CXC 2 (.1) Potri.010G083400 [exp] 228 / 6e-67 AT4G14770 504 / 6e-170 TESMIN/TSO1-like CXC 2 (.1) Potri.008G156100 [exp] 228 / 7e-67 AT4G14770 522 / 1e-176 TESMIN/TSO1-like CXC 2 (.1) Potri.018G030000 [exp] 134 / 1e-33 AT4G14770 207 / 1e-56 TESMIN/TSO1-like CXC 2 (.1) Potri.001G173600 [exp] 128 / 2e-31 AT3G22780 160 / 5e-41 CHINESE FOR 'UGLY', Tesmin/TSO1-like CXC domain-containing protein (.1) Potri.006G251200 [exp] 124 / 5e-30 AT3G22780 188 / 6e-50 CHINESE FOR 'UGLY', Tesmin/TSO1-like CXC domain-containing protein (.1) Potri.001G184800 [exp] 80 / 6e-16 AT2G20110 286 / 3e-90 Tesmin/TSO1-like CXC domain-containing protein (.1.2) Potri.006G160400 [exp] 76 / 1e-14 AT4G29000 518 / 2e-178 Tesmin/TSO1-like CXC domain-containing protein (.1) Potri.018G083000 [exp] 76 / 2e-14 AT4G29000 410 / 9e-139 Tesmin/TSO1-like CXC domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006604 [exp] 187 / 5e-52 AT4G14770 446 / 1e-147 TESMIN/TSO1-like CXC 2 (.1) Lus10039358 [exp] 182 / 1e-49 AT3G22760 367 / 9e-113 Tesmin/TSO1-like CXC domain-containing protein (.1) Lus10002033 [exp] 152 / 2e-39 AT3G22780 248 / 4e-71 CHINESE FOR 'UGLY', Tesmin/TSO1-like CXC domain-containing protein (.1) Lus10002895 [exp] 143 / 2e-36 AT3G22780 236 / 7e-68 CHINESE FOR 'UGLY', Tesmin/TSO1-like CXC domain-containing protein (.1) Lus10020590 [exp] 100 / 2e-24 AT4G14770 102 / 3e-25 TESMIN/TSO1-like CXC 2 (.1) Lus10009494 [exp] 88 / 3e-18 AT4G29000 335 / 2e-106 Tesmin/TSO1-like CXC domain-containing protein (.1) Lus10011693 [exp] 86 / 2e-17 AT4G29000 330 / 3e-105 Tesmin/TSO1-like CXC domain-containing protein (.1) Lus10043225 [exp] 77 / 6e-15 AT4G29000 520 / 2e-179 Tesmin/TSO1-like CXC domain-containing protein (.1) Lus10023656 [exp] 74 / 8e-14 AT4G29000 491 / 2e-168 Tesmin/TSO1-like CXC domain-containing protein (.1) Lus10011103 [exp] 55 / 7e-08 AT4G29000 463 / 8e-157 Tesmin/TSO1-like CXC domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03638 [poplar] [flax] TCR Tesmin/TSO1-like CXC domain, cysteine-rich domain
Representative CDS sequence Show only first row Show all	>Potri.013G038301.2 pacid=42812218 polypeptide=Potri.013G038301.2.p locus=Potri.013G038301 ID=Potri.013G038301.2.v4.1 annot-version=v4.1 ATGATCATGGTGCCTCTCATTGCAATTCCTGAGCCAGAGATGGCAGGCAATTTAAATGAAAGATATCAATCATATGAAAGTGAAAGGGATTTAAGTAAAA TTGGTCAAACTGGGCAAAATGAAGATGAACCAGGATGTGATTGGGTGGCTCTGATTTCTGATGTAGCTGATATCTTGACCTTCGAGCCATCCATTGATGA GGAATCTGCTGAGGAGCGAAAAATGGTGGATCCTGGGACCATATCTTTCATCTCAACTGTTCTACAGGTTCCACAGGATAACAACAATGATTCAGAAACT TCCAATTGTGTAGGTTCTTTCCAGCATTGTGATATGGGAGATCTGGGAATTCAGCCAAAAGAATTTGGAGAAAAGAACGAAGTAGATCAGACTCCATCTG TACTTCCTAGCACTTTACTAGATAAACCAATAGTTACTGATGCGTCTGCAACAGTTGATGTCAAGGGGAAGAACTGCCAGTCTATCGGCAAGCTGCATAA AATACGAAGGCGGTGCCTGGTTTTTGAGATGGGAGCTCATAAAAAGAAATTAGCATTTGAATCTAATAGTAGTTCAACCTCGTCACAATTAGATCATAAT GGTGCCTACTTGGAAAAGCATGCAGCTCCTAGGAGGACAGAAAAGGGAAAGACATTATCTGCATTATCTGGAAGGGGTATTGGTTTGCACTTGAATGCTC TCACTACTGCAAGCAATGGCAAAGCTGTCAAGATTGAGACTCGAGCTTCTGTAAAGCAAGAAATAAGTGAACCTCCTTCCCCTGCTACGAAAATGACATC TGGTCAAGATCCTGCTATTAAATCCATAGCTCTGACCACTGTGCAAACAAATTTTGTTCCTTTTGATAACAAAAATAAGACCATGGAAAATGCTCCTCAC GCATCAATGGTTGTGAATGAAGAGTTTGGCATAAGCAGTCCCAACATGAAGAGGCAAAAATTGGAAAATCAAGGAGCATCACGCAAGCGCTGCAATTGTA AGAGATCAAAATGCCTAAAGCTTTATTGTGAATGCTTTGCTGCTGGTCTCTATTGTATTGAGCCTTGTTCATGTCTAGATTGTTTTAACAATCCTGGTCA TGAAGGCACTGTTTTGGAAACACGCGGACAGATTGAGTCTCGCAACCCTCTTGCATTTGCTCCCAAAGTGATAAGAAACTTGGATTCTGCCTCTGAATTT AGGGGTGGTGTTGGTTGCTCTTCCTACTGTAGATGCGAAGGATGTAAAAACACTTTTGGTTGCAAGAGTGGAGTTGAAGAAGATGACCTGAAATGGGAGG AATCTAAAATACATGAGGATGCATCAGACCTGAATTTACTTGATATAATAGAAAAGGGTGAAGATCACCCAGATCTTATGCCACCTTCTCAAAATTCCAG TTTTATACATGTTTAG
AA sequence Show only first row Show all	>Potri.013G038301.2 pacid=42812218 polypeptide=Potri.013G038301.2.p locus=Potri.013G038301 ID=Potri.013G038301.2.v4.1 annot-version=v4.1 MIMVPLIAIPEPEMAGNLNERYQSYESERDLSKIGQTGQNEDEPGCDWVALISDVADILTFEPSIDEESAEERKMVDPGTISFISTVLQVPQDNNNDSET SNCVGSFQHCDMGDLGIQPKEFGEKNEVDQTPSVLPSTLLDKPIVTDASATVDVKGKNCQSIGKLHKIRRRCLVFEMGAHKKKLAFESNSSSTSSQLDHN GAYLEKHAAPRRTEKGKTLSALSGRGIGLHLNALTTASNGKAVKIETRASVKQEISEPPSPATKMTSGQDPAIKSIALTTVQTNFVPFDNKNKTMENAPH ASMVVNEEFGISSPNMKRQKLENQGASRKRCNCKRSKCLKLYCECFAAGLYCIEPCSCLDCFNNPGHEGTVLETRGQIESRNPLAFAPKVIRNLDSASEF RGGVGCSSYCRCEGCKNTFGCKSGVEEDDLKWEESKIHEDASDLNLLDIIEKGEDHPDLMPPSQNSSFIHV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G22780	CPP	ATTSO1, TSO1	CHINESE FOR 'UGLY', Tesmin/TSO...		Potri.013G038301 [exp]	0	1
AT4G35740		ATRECQ3, RECQL3	A. THALIANA RECQ HELICASE 3, D...		Potri.005G107400 [exp]	3.16	0.7880
AT5G57160		ATLIG4	DNA ligase IV (.1)		Potri.018G141900 [exp]	8.06	0.7444	LIG4.1
					Potri.004G104301 [exp]	8.24	0.7475
AT1G60200			splicing factor PWI domain-con...		Potri.008G147100 [exp]	8.48	0.7753
AT5G43810		PNH, ZLL, AGO10	ZWILLE, PINHEAD, ARGONAUTE 10,...		Potri.008G158800 [exp]	10.48	0.7093	AGO906,Pt-AGO1.2
AT3G50670		U1SNRNP, U1-70K	U1 small nuclear ribonucleopro...		Potri.005G124300 [exp]	13.19	0.7424
					Potri.004G011701 [exp]	17.54	0.7413
					Potri.004G100301 [exp]	17.66	0.7404
AT5G43130		TAF4, TAF4B	TBP-associated factor 4B, TBP-...		Potri.014G018000 [exp]	19.18	0.6822
AT4G37270		ATHMA1, HMA1	ARABIDOPSIS THALIANA HEAVY MET...		Potri.005G142732 [exp]	19.28	0.7019

Compare expression of checked genes

Potri.013G038301 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.