Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G63380 760 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT3G22910 744 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT5G57110 645 / 0 AT-ACA8, ACA8 "AUTOINHIBITED CA2+ -ATPASE, ISOFORM 8", "autoinhibited Ca2+ -ATPase, isoform 8", autoinhibited Ca2+ -ATPase, isoform 8 (.1), autoinhibited Ca2+ -ATPase, isoform 8 (.2) AT4G29900 627 / 0 CIF1, ATACA10, ACA10 COMPACT INFLORESCENCE 1, autoinhibited Ca\(2+\)-ATPase 10, autoinhibited Ca(2+)-ATPase 10 (.1) AT3G21180 618 / 0 ATACA9, ACA9 autoinhibited Ca\(2+\)-ATPase 9, autoinhibited Ca(2+)-ATPase 9 (.1) AT2G41560 501 / 5e-161 ACA4 "autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1) AT3G57330 497 / 2e-159 ACA11 autoinhibited Ca2+-ATPase 11, autoinhibited Ca2+-ATPase 11 (.1) AT1G27770 489 / 2e-156 PEA1, ACA1 PLASTID ENVELOPE ATPASE 1, autoinhibited Ca2+-ATPase 1, autoinhibited Ca2+-ATPase 1 (.1), autoinhibited Ca2+-ATPase 1 (.2) AT4G37640 469 / 3e-149 ACA2 calcium ATPase 2 (.1) AT2G22950 467 / 4e-148 ACA7 auto-regulated Ca2+-ATPase 7, Cation transporter/ E1-E2 ATPase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G038600 [exp] 1651 / 0 AT3G63380 769 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.013G040201 [exp] 1056 / 0 AT3G63380 1198 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.005G052700 [exp] 1041 / 0 AT3G63380 1233 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.005G215600 [exp] 842 / 0 AT3G63380 1461 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.002G047500 [exp] 822 / 0 AT3G63380 1411 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.008G159100 [exp] 798 / 0 AT3G22910 1340 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.010G081100 [exp] 790 / 0 AT3G22910 1337 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.006G072900 [exp] 645 / 0 AT4G29900 1549 / 0.0 COMPACT INFLORESCENCE 1, autoinhibited Ca\(2+\)-ATPase 10, autoinhibited Ca(2+)-ATPase 10 (.1) Potri.018G139800 [exp] 631 / 0 AT4G29900 1566 / 0.0 COMPACT INFLORESCENCE 1, autoinhibited Ca\(2+\)-ATPase 10, autoinhibited Ca(2+)-ATPase 10 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001638 [exp] 629 / 0 AT4G29900 1599 / 0.0 COMPACT INFLORESCENCE 1, autoinhibited Ca\(2+\)-ATPase 10, autoinhibited Ca(2+)-ATPase 10 (.1) Lus10001428 [exp] 625 / 0 AT4G29900 1593 / 0.0 COMPACT INFLORESCENCE 1, autoinhibited Ca\(2+\)-ATPase 10, autoinhibited Ca(2+)-ATPase 10 (.1) Lus10033386 [exp] 608 / 0 AT3G21180 1615 / 0.0 autoinhibited Ca\(2+\)-ATPase 9, autoinhibited Ca(2+)-ATPase 9 (.1) Lus10034840 [exp] 608 / 0 AT3G21180 1647 / 0.0 autoinhibited Ca\(2+\)-ATPase 9, autoinhibited Ca(2+)-ATPase 9 (.1) Lus10004086 [exp] 598 / 0 AT3G63380 1039 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10016366 [exp] 492 / 4e-157 AT2G41560 1463 / 0.0 "autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1) Lus10035439 [exp] 491 / 6e-157 AT2G41560 1535 / 0.0 "autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1) Lus10018687 [exp] 483 / 3e-154 AT1G27770 1667 / 0.0 PLASTID ENVELOPE ATPASE 1, autoinhibited Ca2+-ATPase 1, autoinhibited Ca2+-ATPase 1 (.1), autoinhibited Ca2+-ATPase 1 (.2) Lus10042040 [exp] 477 / 1e-151 AT3G57330 1542 / 0.0 autoinhibited Ca2+-ATPase 11, autoinhibited Ca2+-ATPase 11 (.1) Lus10011522 [exp] 474 / 6e-151 AT4G37640 1704 / 0.0 calcium ATPase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00122 [poplar] [flax] E1-E2_ATPase E1-E2 ATPase PF00689 [poplar] [flax] Cation_ATPase_C Cation transporting ATPase, C-terminus PF00690 [poplar] [flax] Cation_ATPase_N Cation transporter/ATPase, N-terminus CL0137 [poplar] [flax] HAD PF00702 [poplar] [flax] Hydrolase haloacid dehalogenase-like hydrolase
Representative CDS sequence Show only first row Show all	>Potri.013G038400.1 pacid=42812565 polypeptide=Potri.013G038400.1.p locus=Potri.013G038400 ID=Potri.013G038400.1.v4.1 annot-version=v4.1 ATGGCTATGAACTCTCGAAAAACTGGAGACAAAATCATTCTTGATCAAGAAAATCTGTTACCAGAGCCGAAACGCATTCAGAGAAGGTGGAAGATGGCTT ACAAGGTCATCTATTTCACAAGGCTTCTTGTTTCTTTCTCCAAGAAAGATCTTGACAGCCAGACCGAGATCCCAGGCTCCACATCCTATGTTGCTATTGA CGTTCATGATGATACGTCCCCATGTGAGAATAAACCCGTTTCTTTGATTAATGTCTATCAGAGAACACTCATCAATATGGTAAAAGAAAAGAGCCTTAAA ATCCTGAATCAATTGGGAGGAGTTTCGCAAGTTGCTATAATTCTTGAAACTGATGTTAAGGATGGTGTAGGGGAAGTTGATGTTGCTCATAGAAGGCATG TTTTCGGTGAAAATAGCTATAAGAAGTCTCCTTCTAAAAGATTTCCAAGCTATGTTCTTGAAGAATGCAAGGACCCGACCATTATCATTCTTTTGTTCTG TGCTATTATGTCCTTGGGATTCGCTATCAAGCTGCATGGGCTGAGAGATGGGTGGTACGATGGTGGCAGTATTATTCTCTCAACTGTTCATCTTGTTGCT GTCTCTGCTATTAGCAAATTCATGAAATCCAATAAGTTTGAGAAACTATTTCGTGTGAGAAATGATATAAAGGTACAAGTAGTGAGAGACAGGAGGCGAC GTCGTGAAATTTCTATTTTTGAAGTGGTGGTGGGCGACGTGGTGTATTTGAATAAAGGAGACCAAATACCAGCTGATGGGTTGCTCTTGAATGATTCTTC TTTGAAGGTGGATGAATCAAGCATGAGTAGTGAAATGGACCATGTTGAGGTGAAAGGAAGGGAAAACCCTTTCTTGCTTTCTGGCTCAAAGGTGACTGAT GGCAATGGCTTCATGCTTGTTACGTCTGTTGGAATGAATACGGCATGGGGTGAGATGATGAGTTCTAGAAGCCATGATCTGGATGAACAGACTCCATTAC GATCTCACCTCGATAAGATCGTTTCTTACATGAGGAAGGTTGGATGGACAGTTGCTTTATTTGTGCTTGTAGTGCTGCTGATGAGGTACTTCACACGGAA AACTAGAGATGATAGTGGTTATTATGAATACAATGGGAGCAAGACAAAGATTAATAATGTGCTGGATCCAGTTGTGCGCAGTATTGCTGCAGCTGTGACT ATTGTGGTGGTGGCAACTCCTGAAGGTCTCTCTTTGGCTGTAACTCTGACTTATCTATACTTCATGAAGAGAATGATGAAAGAGAGAGTCATGGTTCGTG AACTCTCTTCTTGTGAAAAAATGGGTTCAGCGACAACAATCATCATAGATAAGAAAGACATTCTTACTTTGAATCAGATGGAGGTTGTGGAATTCTTCAT TGGAGAAGATATAATCAAAGCTAAACCTTCAAATGGTGAAATAGAATCGAAGGTCCTTGAGTTACTACAAGAAGGGTGTACTTCAATTCTTGAAATTTCT GGTAGTCCAACTGAAAAAGCAATACTTTCCTGGGCTATGTCGCCTTTGGGCATAAATATTGGCGAGGAAAAGAAAAAAGTTGAAATAAAACATGAAGAGA ACTTCGATCCTGAGAAGAACGGAAGCGGGGTACTATTGGTGAGGAGAAACAATGAGAAGGTAGTTCGTCACAGGAAGGGAGATGCCGAGGTGATACTAGC CATGTGTTCAAACTATTATGTTAGAAATGGGGAGATTAGAGACGTGAATGAGGATGCAAGAAAGCAGTTGAAGGAGATAATTCGGAGAATGGCAGTCAAA AGCCTCTGCTGTATGGCGTTTGCCTGTAAAGAAGTTGAAGACAGTGGACAGGCCTCTGACGAGCTTGAAGCAGCTGGATTCACTTTGCTGGGGCTCGTGG GGCTGAAGGACGGATGCAGAATAGAGATTAGAACGGCGGTAGAATCATGTAAGAATGCAGGAGTGAAAGTTATATTGGTCACCGGTGACGATGTTCGTAC AGCAAGAGCTACAGCCATTGAATGTGGAGTTTTCAGTTGTGATCAAGAGGATGTGGAAAGCGATGCTATAGTCGAAGGAGTCCAATTCAGTAACTACTCG CGGGAGCAGAGAATGGAAAGGATTGGGAAAATCCTTGTGATGGGAAGTTCATCCCCAGCTGACAAGCTTGAAATGATACGATGTTTAAAGGAGGAAGGGC ATGTGGTAGCAGTAACTGGTGGTGGTACCGACGATGCCCTAGCTTTGAAGGAAGCAGATATTGAGCTCTCCATGGGAATACGAGGGACTGAGGTGGCGAA AGAGGGCTCAAAAATTGTCATATTGGATGATAACTTCATTTCCGTGGTGACTATGTTGAGCTGGGGAAGGTGCGTCTACAACAATATTCAGAAGTTCATT CAATTTCAGCTTACAATGAACGTTGCAGCCCTTGTCATCAACCTTATCTCAGCTTGTTCTTCTGGTGTATTATCATTGTCAGCATTCCAGATACTCTGGG AAAAGGTTATCATTGATACTCTGGGCCTACTAGCAGTGATCAGTCATGAACAGCCCACCAAAGATCTCATGAGAAAGCCTCCTGTATGTTGGTCCAAGCG ACCTATCAACGAAAGCATCTTCAACAACATCCTCATCCAGGTCTTTTATCAGGCAGTTACTCTATCAGCTCTACAATTCAATGTGGGTAAGTCAATTCTG GGTTTGGCGATTAATAACACACTTGTTTTCAATACCTCAGTCATCTGCCAAGTTTTCAATATATTTACTGCGAGGCTGCCTGTGGAGAAGAAGAGCATGT TTATGTGGATTCGCAAGAACAAGCGTTTCTTAGCGGCTGTGCTTGTTGTCACAGTTGCTCAAGGAGTGATAGTGGAGTTATCGAGCAAGGTGACTAACAG CAATGAGAAACTGGATCGGAAGCAGTGGTGTGTGTCCTTAACCATGGCTGCTTCATCTTGGTTGTTTGATCAGCTTGTAAGGCGTATGATTCTTCCTAAA ATCAGCTTTCTTGGATCTTGA
AA sequence Show only first row Show all	>Potri.013G038400.1 pacid=42812565 polypeptide=Potri.013G038400.1.p locus=Potri.013G038400 ID=Potri.013G038400.1.v4.1 annot-version=v4.1 MAMNSRKTGDKIILDQENLLPEPKRIQRRWKMAYKVIYFTRLLVSFSKKDLDSQTEIPGSTSYVAIDVHDDTSPCENKPVSLINVYQRTLINMVKEKSLK ILNQLGGVSQVAIILETDVKDGVGEVDVAHRRHVFGENSYKKSPSKRFPSYVLEECKDPTIIILLFCAIMSLGFAIKLHGLRDGWYDGGSIILSTVHLVA VSAISKFMKSNKFEKLFRVRNDIKVQVVRDRRRRREISIFEVVVGDVVYLNKGDQIPADGLLLNDSSLKVDESSMSSEMDHVEVKGRENPFLLSGSKVTD GNGFMLVTSVGMNTAWGEMMSSRSHDLDEQTPLRSHLDKIVSYMRKVGWTVALFVLVVLLMRYFTRKTRDDSGYYEYNGSKTKINNVLDPVVRSIAAAVT IVVVATPEGLSLAVTLTYLYFMKRMMKERVMVRELSSCEKMGSATTIIIDKKDILTLNQMEVVEFFIGEDIIKAKPSNGEIESKVLELLQEGCTSILEIS GSPTEKAILSWAMSPLGINIGEEKKKVEIKHEENFDPEKNGSGVLLVRRNNEKVVRHRKGDAEVILAMCSNYYVRNGEIRDVNEDARKQLKEIIRRMAVK SLCCMAFACKEVEDSGQASDELEAAGFTLLGLVGLKDGCRIEIRTAVESCKNAGVKVILVTGDDVRTARATAIECGVFSCDQEDVESDAIVEGVQFSNYS REQRMERIGKILVMGSSSPADKLEMIRCLKEEGHVVAVTGGGTDDALALKEADIELSMGIRGTEVAKEGSKIVILDDNFISVVTMLSWGRCVYNNIQKFI QFQLTMNVAALVINLISACSSGVLSLSAFQILWEKVIIDTLGLLAVISHEQPTKDLMRKPPVCWSKRPINESIFNNILIQVFYQAVTLSALQFNVGKSIL GLAINNTLVFNTSVICQVFNIFTARLPVEKKSMFMWIRKNKRFLAAVLVVTVAQGVIVELSSKVTNSNEKLDRKQWCVSLTMAASSWLFDQLVRRMILPK ISFLGS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G63380			ATPase E1-E2 type family prote...		Potri.013G038400 [exp]	0	1
AT5G57510			unknown protein		Potri.018G006800 [exp]	14.14	0.6981
					Potri.011G164150 [exp]	16.70	0.6608
AT2G01050			zinc ion binding;nucleic acid ...		Potri.017G002501 [exp]	18.76	0.6925
AT4G25480	AP2_ERF	CBF3, DREB1A, A...	C-REPEAT BINDING FACTOR 3, de...		Potri.009G147700 [exp]	24.00	0.6310
					Potri.009G094450 [exp]	25.39	0.5722
AT5G35770		SAP	STERILE APETALA, Transducin/WD...		Potri.014G166400 [exp]	30.57	0.7061	SAP.1
AT3G28050			nodulin MtN21 /EamA-like trans...		Potri.001G032100 [exp]	33.46	0.6622
AT3G58970		MRS2-4, MGT6	magnesium transporter 6 (.1)		Potri.018G151800 [exp]	33.46	0.6328
					Potri.001G248704 [exp]	36.41	0.6540
AT2G01050			zinc ion binding;nucleic acid ...		Potri.017G002400 [exp]	41.35	0.6540

Compare expression of checked genes

Potri.013G038400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.