Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04830 474 / 3e-170 Protein prenylyltransferase superfamily protein (.1.2) AT5G28220 465 / 1e-166 Protein prenylyltransferase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G051300 [exp] 546 / 0 AT3G04830 505 / 0.0 Protein prenylyltransferase superfamily protein (.1.2) Potri.013G038501 [exp] 174 / 2e-55 AT3G04830 145 / 2e-44 Protein prenylyltransferase superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001785 [exp] 498 / 6e-180 AT3G04830 480 / 1e-172 Protein prenylyltransferase superfamily protein (.1.2) Lus10020242 [exp] 353 / 5e-121 AT3G04830 361 / 3e-124 Protein prenylyltransferase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF14559 [poplar] [flax] TPR_19 Tetratricopeptide repeat
Representative CDS sequence Show only first row Show all	>Potri.013G038700.1 pacid=42811847 polypeptide=Potri.013G038700.1.p locus=Potri.013G038700 ID=Potri.013G038700.1.v4.1 annot-version=v4.1 ATGGTGACCAAAACAGAAGAGACGCAATTGAATAGATTGGAGAGTCAAGTGGACAATGGAGGAGGAGGGGCATGGGAGTATCTCTGCATGGTTAGAAAGC TCAAAGTTAGGCGTTCTGTCAAGGTGTTAAAGCATGGATTATTGATCTTGAATGACTCCAAGAAAAGATCCAGTCTTGGTCCTGAAGAATGGACTCTATA TGAACAGGTTGCAGTTGCAGCCATGGACTGCCAATCTCTTGAGGTTGCAAAGGACTGTGTAAATGCGTTGCAGAAGAAATTTCCAGAGAGTAAAAGAGTT GGCAGACTGGAGGCAATGTTATTTGAAGCAAAGGGATCTTGGGGAGAGGCAGAAAAGGCTTACTCAAGCCTTTTAGAGGACAATCCTTTTGATCAGGTAG TACACAAGAGAAGGGTAGCTTTGGCAAAGGCACAAGGCAATTTGACAGGGGCAATTGACTTGCTCAATAAGTATCTTGAAACATTTATGGCTGATCATGA TGCCTGGAGAGAGCTTGCTGAAATATACATCTCCTTGCAAATGTACAAGCAAGCAGCGTTCTGCTATGAAGAGCTGATATTATCTCAACCTACTGTCCCG CTGTATCATTTAGCGTATGCTGATGTGCTTTACACTCTTGGTGGAATTGAAAACCTTCTGACAGCGAAGAAATATTATTCTTCCACCATAGATTTGACTG GGGGCAAGAACACCAGGGCACTTTTTGGTATTTGTCTGTGTACGTCAGCTATTGCACAGCTTTCAAAAGGACGAAACAAGGAAGACAAGGACAGTCCAGA CTTGCAATCTTTGGCAACAGCAGCTTTGGAGAAAGAGTACAAGCAGAGAGCTTCTGACAAACTCTCTGTGTTCACTTCAGGTTTTAAAAGCTTGAAAGTT TCATCATAA
AA sequence Show only first row Show all	>Potri.013G038700.1 pacid=42811847 polypeptide=Potri.013G038700.1.p locus=Potri.013G038700 ID=Potri.013G038700.1.v4.1 annot-version=v4.1 MVTKTEETQLNRLESQVDNGGGGAWEYLCMVRKLKVRRSVKVLKHGLLILNDSKKRSSLGPEEWTLYEQVAVAAMDCQSLEVAKDCVNALQKKFPESKRV GRLEAMLFEAKGSWGEAEKAYSSLLEDNPFDQVVHKRRVALAKAQGNLTGAIDLLNKYLETFMADHDAWRELAEIYISLQMYKQAAFCYEELILSQPTVP LYHLAYADVLYTLGGIENLLTAKKYYSSTIDLTGGKNTRALFGICLCTSAIAQLSKGRNKEDKDSPDLQSLATAALEKEYKQRASDKLSVFTSGFKSLKV SS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G04830			Protein prenylyltransferase su...		Potri.013G038700 [exp]	0	1
AT1G19990			unknown protein		Potri.005G239600 [exp]	1.41	0.7743
AT5G16790		AtTHO7	Tho complex subunit 7/Mft1p (....		Potri.013G082900 [exp]	1.41	0.7834
AT2G02470	Alfin	AL6	alfin-like 6 (.1.2)		Potri.003G044700 [exp]	1.73	0.7735
AT1G54390		ING2	INHIBITOR OF GROWTH 2, PHD fin...		Potri.013G058800 [exp]	6.32	0.7700
AT1G07210			Ribosomal protein S18 (.1)		Potri.006G170500 [exp]	7.41	0.7685
AT3G24570			Peroxisomal membrane 22 kDa (M...		Potri.018G037100 [exp]	14.73	0.7134
AT2G30260		U2B''	U2 small nuclear ribonucleopro...		Potri.013G153700 [exp]	17.66	0.6913
AT3G52860			unknown protein		Potri.014G127900 [exp]	18.43	0.6981
					Potri.002G138200 [exp]	22.47	0.6036
AT2G20280	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Potri.008G045600 [exp]	25.41	0.6547

Compare expression of checked genes

Potri.013G038700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.