Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14750 128 / 2e-33 IQD19 IQ-domain 19 (.1) AT3G49260 82 / 7e-17 IQD21 IQ-domain 21 (.1.2.3) AT1G01110 82 / 1e-16 IQD18 IQ-domain 18 (.1.2) AT3G16490 80 / 3e-16 IQD26 IQ-domain 26 (.1) AT5G07240 80 / 3e-16 IQD24 IQ-domain 24 (.1) AT4G00820 79 / 6e-16 IQD17 IQ-domain 17 (.1) AT5G13460 78 / 2e-15 IQD11 IQ-domain 11 (.1) AT5G62070 77 / 3e-15 IQD23 IQ-domain 23 (.1) AT1G51960 76 / 4e-15 IQD27 IQ-domain 27 (.1) AT1G72670 76 / 5e-15 IQD8 IQ-domain 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G051500 [exp] 567 / 0 AT4G14750 127 / 6e-33 IQ-domain 19 (.1) Potri.008G156700 [exp] 171 / 1e-48 AT4G14750 307 / 6e-101 IQ-domain 19 (.1) Potri.010G082600 [exp] 170 / 1e-48 AT4G14750 261 / 2e-83 IQ-domain 19 (.1) Potri.012G139800 [exp] 89 / 3e-19 AT5G07240 137 / 3e-36 IQ-domain 24 (.1) Potri.015G142200 [exp] 87 / 1e-18 AT5G07240 138 / 3e-36 IQ-domain 24 (.1) Potri.001G021000 [exp] 84 / 2e-17 AT5G13460 345 / 3e-115 IQ-domain 11 (.1) Potri.006G226600 [exp] 80 / 3e-16 AT2G26180 386 / 1e-131 IQ-domain 6 (.1) Potri.002G178500 [exp] 80 / 4e-16 AT4G00820 458 / 1e-156 IQ-domain 17 (.1) Potri.014G104600 [exp] 80 / 4e-16 AT4G00820 432 / 2e-146 IQ-domain 17 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009187 [exp] 160 / 9e-45 AT4G14750 114 / 8e-28 IQ-domain 19 (.1) Lus10015930 [exp] 132 / 2e-34 AT4G14750 97 / 4e-22 IQ-domain 19 (.1) Lus10021904 [exp] 125 / 1e-31 AT4G14750 314 / 2e-103 IQ-domain 19 (.1) Lus10041188 [exp] 108 / 8e-26 AT4G14750 288 / 2e-93 IQ-domain 19 (.1) Lus10006613 [exp] 97 / 1e-21 AT4G14750 295 / 6e-96 IQ-domain 19 (.1) Lus10005760 [exp] 88 / 7e-19 AT5G07240 219 / 3e-67 IQ-domain 24 (.1) Lus10027435 [exp] 87 / 1e-18 AT5G62070 207 / 3e-62 IQ-domain 23 (.1) Lus10014870 [exp] 80 / 5e-16 AT2G26180 249 / 5e-74 IQ-domain 6 (.1) Lus10019916 [exp] 78 / 2e-15 AT5G03040 410 / 9e-141 IQ-domain 2 (.1.2.3) Lus10041419 [exp] 78 / 2e-15 AT5G03040 345 / 2e-115 IQ-domain 2 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [poplar] [flax] EF_hand PF00612 [poplar] [flax] IQ IQ calmodulin-binding motif CL0220 [poplar] [flax] PF13178 [poplar] [flax] DUF4005 Protein of unknown function (DUF4005)
Representative CDS sequence Show only first row Show all	>Potri.013G038901.2 pacid=42811039 polypeptide=Potri.013G038901.2.p locus=Potri.013G038901 ID=Potri.013G038901.2.v4.1 annot-version=v4.1 ATGGGAAAGGCAAGCAGGTGGATGATAAACTTCTTGCTAGGAAAAAAGGAGGAGAAAACAAAGAAGAACGACATCTCCTTCCATGCAGAGAAGGAGACAA CACCAACTGCAACTCCAGCTTATAAGAGGAGATGGAGCTTTGGCAAATCTGCAAAGAAAGAGAGAGTTTACAGGGGTCGTAGATCTCTTGACTCGATCAT CACCACCCCATATTTAGCACATAGATCATCATTTGCTTTGCCAACCGCTGAAGCTATTAAAAAAGTTGTCGCACAAACACATGCGGCAGATAGAATAAGA AAGGCAGTGGAAGATGCAGCTGCCACCAGGATTCAAGCTGTCTTTCGTTCTTATCTGGCCAGGAAAGCTTTGTGTGCGTTGAGGGGATTAGTCAAGTTAC AAGCATTAGTAAGGGGTCACCAGGTGAGGAAACAAACAACTGCAACTCTTCGACGAATGCATACACTCATGACAATACAAGCAAGAGCTTGTTGTCATAG AGTTCAGATGGCCGGAGAATCACAACAACTTGCCATGAAAAGAAAATCATCAAGACACAGAGAGGCAGTTGATGTTAAGAACAGAAGTGGCTACATGAAT CATTCATTAATAGACAGAGTAGAGAGAGAGATTCCCAGATTCTACTCTGGGGAACTAAAAATCTCTAGGCAAGAACATCAATACAAGGAGTTTTCCTTCA CAGCACAAAACAGTCCCACAACTGGTTCGCCCCCTTCCAAAACAACCTGGGGAAGAGCTTCCTTCACTTACGGACGGCCAGACTATGTCGACACTCTTTC TAATCAATTTTCATCCCTACCAAGCTACATGGCCGACACAGAATCTTCCAAGGCTAAAGTCAGGTCACAAAGCGAACCGAAACAGAGACCTAAAGAAAGC ACCAGAGCTAAAAACAAGCAAACTACTTGGATGGATGGACTGAATGGCCTCCAAGATGCTCAGTCACAATGCGCATCTTCACACTCAAAACGCATGGTTC ATGTAAACCAAGATCCATGGTTTATAAAACTCTATAGACCAACAAAGTCAAAGGACAGTTATTATGATGCCAACATCACATCTAGCACTCAAGATTCCAA CTACAGCAAAGTTCTTGTCACATATGAGCCCCATCTGAATATCTACTAA
AA sequence Show only first row Show all	>Potri.013G038901.2 pacid=42811039 polypeptide=Potri.013G038901.2.p locus=Potri.013G038901 ID=Potri.013G038901.2.v4.1 annot-version=v4.1 MGKASRWMINFLLGKKEEKTKKNDISFHAEKETTPTATPAYKRRWSFGKSAKKERVYRGRRSLDSIITTPYLAHRSSFALPTAEAIKKVVAQTHAADRIR KAVEDAAATRIQAVFRSYLARKALCALRGLVKLQALVRGHQVRKQTTATLRRMHTLMTIQARACCHRVQMAGESQQLAMKRKSSRHREAVDVKNRSGYMN HSLIDRVEREIPRFYSGELKISRQEHQYKEFSFTAQNSPTTGSPPSKTTWGRASFTYGRPDYVDTLSNQFSSLPSYMADTESSKAKVRSQSEPKQRPKES TRAKNKQTTWMDGLNGLQDAQSQCASSHSKRMVHVNQDPWFIKLYRPTKSKDSYYDANITSSTQDSNYSKVLVTYEPHLNIY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G14750		IQD19	IQ-domain 19 (.1)		Potri.013G038901 [exp]	0	1
AT5G39160			RmlC-like cupins superfamily p...		Potri.011G163300 [exp]	4.24	0.9869	GER2.30
AT5G39190		ATGER2, GLP2A	GERMIN-LIKE PROTEIN 2A, A. THA...		Potri.011G162200 [exp]	5.29	0.9844	GER2.33
AT3G17675			Cupredoxin superfamily protein...		Potri.013G054500 [exp]	8.48	0.9863
AT3G17675			Cupredoxin superfamily protein...		Potri.013G030450 [exp]	10.24	0.9764
					Potri.005G061780 [exp]	10.95	0.9751
					Potri.007G117900 [exp]	11.22	0.9853
AT3G09270		ATGSTU8	glutathione S-transferase TAU ...		Potri.013G072400 [exp]	12.16	0.9848
AT1G07250		UGT71C4	UDP-glucosyl transferase 71C4 ...		Potri.016G015800 [exp]	12.24	0.9844
AT5G64260		EXL2, MSJ1.10	EXORDIUM like 2 (.1)		Potri.005G163000 [exp]	16.43	0.9716
AT4G34860		A/N-InvB	alkaline/neutral invertase B, ...		Potri.005G239400 [exp]	16.58	0.9848

Compare expression of checked genes

Potri.013G038901 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.