Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G54510 692 / 0 ATNEK1 NIMA-related serine/threonine kinase 1 (.1.2.3) AT3G04810 679 / 0 ATNEK2 NIMA-related kinase 2 (.1.2) AT5G28290 615 / 0 ATNEK3 NIMA-related kinase 3 (.1) AT3G63280 607 / 0 ATNEK4 NIMA-related kinase 4 (.1.2) AT3G44200 414 / 3e-133 IBO1, ATNEK6 "NIMA \(never in mitosis, gene A\)-related 6", NIMA-RELATED KINASE6, NIMA (never in mitosis, gene A)-related 6 (.1) AT3G20860 387 / 2e-129 ATNEK5 NIMA-related kinase 5 (.1) AT3G12200 293 / 2e-91 ATNEK7 NIMA-related kinase 7 (.1.2) AT1G50240 138 / 7e-34 FU FUSED, Protein kinase family protein with ARM repeat domain (.2) AT1G69220 132 / 4e-32 SIK1 Protein kinase superfamily protein (.1.2) AT1G53570 131 / 5e-32 MAPKKK3, MAP3KA MAP KINASE KINASE KINASE 3, mitogen-activated protein kinase kinase kinase 3 (.1.2.3.4.5)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G051600 [exp] 1059 / 0 AT3G04810 699 / 0.0 NIMA-related kinase 2 (.1.2) Potri.002G049400 [exp] 739 / 0 AT3G04810 659 / 0.0 NIMA-related kinase 2 (.1.2) Potri.001G218100 [exp] 414 / 2e-133 AT3G44200 895 / 0.0 "NIMA \(never in mitosis, gene A\)-related 6", NIMA-RELATED KINASE6, NIMA (never in mitosis, gene A)-related 6 (.1) Potri.009G020100 [exp] 412 / 2e-132 AT3G44200 869 / 0.0 "NIMA \(never in mitosis, gene A\)-related 6", NIMA-RELATED KINASE6, NIMA (never in mitosis, gene A)-related 6 (.1) Potri.006G056300 [exp] 399 / 6e-131 AT3G20860 473 / 2e-162 NIMA-related kinase 5 (.1) Potri.016G051900 [exp] 397 / 1e-130 AT3G20860 474 / 5e-163 NIMA-related kinase 5 (.1) Potri.001G018700 [exp] 377 / 1e-123 AT3G20860 503 / 1e-175 NIMA-related kinase 5 (.1) Potri.003G205400 [exp] 374 / 1e-122 AT3G20860 486 / 5e-169 NIMA-related kinase 5 (.1) Potri.019G052500 [exp] 136 / 5e-33 AT1G50240 1606 / 0.0 FUSED, Protein kinase family protein with ARM repeat domain (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009186 [exp] 823 / 0 AT1G54510 695 / 0.0 NIMA-related serine/threonine kinase 1 (.1.2.3) Lus10015928 [exp] 820 / 0 AT1G54510 694 / 0.0 NIMA-related serine/threonine kinase 1 (.1.2.3) Lus10001783 [exp] 726 / 0 AT1G54510 705 / 0.0 NIMA-related serine/threonine kinase 1 (.1.2.3) Lus10020244 [exp] 719 / 0 AT1G54510 694 / 0.0 NIMA-related serine/threonine kinase 1 (.1.2.3) Lus10042632 [exp] 672 / 0 AT3G04810 671 / 0.0 NIMA-related kinase 2 (.1.2) Lus10001857 [exp] 399 / 1e-127 AT3G44200 854 / 0.0 "NIMA \(never in mitosis, gene A\)-related 6", NIMA-RELATED KINASE6, NIMA (never in mitosis, gene A)-related 6 (.1) Lus10013338 [exp] 399 / 3e-127 AT3G44200 845 / 0.0 "NIMA \(never in mitosis, gene A\)-related 6", NIMA-RELATED KINASE6, NIMA (never in mitosis, gene A)-related 6 (.1) Lus10040499 [exp] 380 / 4e-124 AT3G20860 476 / 2e-164 NIMA-related kinase 5 (.1) Lus10011301 [exp] 372 / 2e-117 AT3G20860 470 / 2e-157 NIMA-related kinase 5 (.1) Lus10031834 [exp] 343 / 7e-112 AT3G20860 563 / 0.0 NIMA-related kinase 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.013G039000.4 pacid=42811938 polypeptide=Potri.013G039000.4.p locus=Potri.013G039000 ID=Potri.013G039000.4.v4.1 annot-version=v4.1 ATGGAGCAGTATGAAATATTAGAGCAAATAGGGAAGGGTTCTTTTGGTTCAGCTCTTCTTGTGAGGCATAAACATGAAAAAAAGAAGTATGTGTTGAAAA AGATCAGGCTTGCCAGGCAGACTGACAGGTCACGTCGATCTGCACATCAAGAGAAAGAGCTCATTTCTAGGATCCGAAGTCCATTTATCGTAGAGTACAA AGATTCCTGGGTAGAAAAGGGTTGCTATGTGTGCATTATTATAGGTTATTGTGAAGGAGGAGACATGGCAGAAGCTATAAAGAAAGCTAATGGCATGCTG TTCTCTGAAGAGAAGCTCTGTAAGTGGCTCGTTCAGCTTCTCATGGCACTTGACTACTTGCATATGAACCACATTCTTCACCGTGATGTCAAGTGCTCCA ATATCTTCTTGACAAAACAGCAAGACATTCGTCTTGGTGATTTTGGACTTGCCAAAATATTAACTTCAGATGACCTTGCTTCCTCTGTCGTGGGAACGCC CAGCTATATGTGTCCTGAGCTTCTTGCTGACATACCTTATGGTTCTAAGTCAGATATTTGGTCTTTAGGTTGCTGTATATATGAAATGACCTCTCTTAGG CCTGCATTTAAAGCATTTGATATGCAAGCACTGATTAACAAAATAAATAAGTCAATTGTGGCTCCACTTCCAACTAAATATTCTGGTGCCTTCCGAGGAC TTGTTAAAAGCATGCTGCGAAAGAATCCAGAGCTCAGACCCGGTGCTGCAGAGCTGCTCAGGCATCCGCAGCTTCAGCCTTACGTCCTTAAGATTCATCT TAAGATGAGTAGCCCTAGACAGAATACATTACCTTTCCAATGGCCTGAACCCCATTACATGAAGAAAACAAGATTTTTAGTGCCAGAAGATAATCCTCGC AAAGTTCACAGGGACAAGAGGTATTCACTTGGTAATGATAGGGCATTAAATCCAAGTATTTCTGTAGCAGAGCAAGATTCTGTGTGTTCTACTGAAGGGA TACATGATACACCGATTTATTTGAATCGAAGGTTATCAGATTCATCCATCGAGTGCAGCCAAGGAACAGTCATTTGCAGATCAATTGCTTCAAAACCTTC AAACAGTGCCAAGACTCCAAAACTCACACCGACCAAGGCCTCTGTCACTATTAAGAGACGGACAGAGTCTGCAAGAAAATGTGAATCTCTTCCTGTCACT CGAAAAACACCGACTAAAAAATCCAACCCATCAGCTCGCAGAGCATCTTTTCCATTGCCATCAAAAGGCAGGATACAAAATTCCCCTAGTGGGACTAATA TTAGCATCCTTAGCCAGATAAAATCTCCTGATGTTTCTGTCAATGCTCCTCGAATTGATAGGATGGCTGAATTCCCGCTGGCTTCATATGATGAACCATT CCTCCCTATCCGGAAAACGTCATCAACCTCAGCACGAGGGTCATCCAACTCCTTGCGTCATGGTGACTGCTCAATCACAAAGGATAAATGCACAGTTCAG CTCAGCGACAGAACCTCTGCAAGGCCCAATCTCACTGAGGCCTGGCAAGGAATTGAACTTGGCATGTTTCAGGTAGATGAAGAGAACGGAAGCAATTCCT CCAATCAAAATGCCACTGCTGGGGCATCAAGCCGCACCTCATCAGACACGAGGCAGCGCAGGTTTGACACCTCATCACTCCAGCAGCGCGCAGAAGCTCT GGAAGGTTTGTTAGAATTCAGTGCAAGATTACTGCAAGCGGCAAGGTACGATGAGCTTGGGGTGCTACTGAAGCCATTTGGACCTGGAAAGGTTTCCCCC AGGGAAACTGCCATATGGCTGACAAAGAGCTTCAAGGAAAATACTGCCAAACCAGAAGATTGA
AA sequence Show only first row Show all	>Potri.013G039000.4 pacid=42811938 polypeptide=Potri.013G039000.4.p locus=Potri.013G039000 ID=Potri.013G039000.4.v4.1 annot-version=v4.1 MEQYEILEQIGKGSFGSALLVRHKHEKKKYVLKKIRLARQTDRSRRSAHQEKELISRIRSPFIVEYKDSWVEKGCYVCIIIGYCEGGDMAEAIKKANGML FSEEKLCKWLVQLLMALDYLHMNHILHRDVKCSNIFLTKQQDIRLGDFGLAKILTSDDLASSVVGTPSYMCPELLADIPYGSKSDIWSLGCCIYEMTSLR PAFKAFDMQALINKINKSIVAPLPTKYSGAFRGLVKSMLRKNPELRPGAAELLRHPQLQPYVLKIHLKMSSPRQNTLPFQWPEPHYMKKTRFLVPEDNPR KVHRDKRYSLGNDRALNPSISVAEQDSVCSTEGIHDTPIYLNRRLSDSSIECSQGTVICRSIASKPSNSAKTPKLTPTKASVTIKRRTESARKCESLPVT RKTPTKKSNPSARRASFPLPSKGRIQNSPSGTNISILSQIKSPDVSVNAPRIDRMAEFPLASYDEPFLPIRKTSSTSARGSSNSLRHGDCSITKDKCTVQ LSDRTSARPNLTEAWQGIELGMFQVDEENGSNSSNQNATAGASSRTSSDTRQRRFDTSSLQQRAEALEGLLEFSARLLQAARYDELGVLLKPFGPGKVSP RETAIWLTKSFKENTAKPED

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G54510		ATNEK1	NIMA-related serine/threonine ...		Potri.013G039000 [exp]	0	1
AT3G51950	C3HZnF		Zinc finger (CCCH-type) family...		Potri.009G050700 [exp]	1.41	0.8802
AT1G69530		ATHEXPALPHA1.2,...	EXPANSIN 1, expansin A1 (.1.2....		Potri.008G088300 [exp]	2.44	0.8736	PtEXPA4,EXPA1.2
AT5G04310			Pectin lyase-like superfamily ...		Potri.010G229000 [exp]	2.82	0.8745
AT1G05170			Galactosyltransferase family p...		Potri.011G004200 [exp]	3.16	0.8125
AT5G11300		CYC2BAT, CYCA2;...	CYCLIN A2;2, mitotic-like cycl...		Potri.006G247200 [exp]	7.48	0.8308
AT4G30020			PA-domain containing subtilase...		Potri.018G143400 [exp]	8.94	0.8191
AT3G26430			GDSL-like Lipase/Acylhydrolase...		Potri.010G047900 [exp]	12.36	0.7997
AT4G19710		AK-HSDHII, AK-H...	aspartate kinase-homoserine de...		Potri.013G099500 [exp]	14.45	0.8118	HSDH.2
AT1G13170		ORP1D	OSBP(oxysterol binding protein...		Potri.010G051400 [exp]	14.49	0.7811
AT4G36930	bHLH	SPT, bHLH024	SPATULA, basic helix-loop-heli...		Potri.014G025800 [exp]	15.32	0.8410	ALC.2

Compare expression of checked genes

Potri.013G039000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.