Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G28300 291 / 4e-90 Trihelix Duplicated homeodomain-like superfamily protein (.1) AT1G76890 127 / 1e-30 Trihelix AT-GT2, GT2 Duplicated homeodomain-like superfamily protein (.2) AT1G76880 118 / 1e-27 Trihelix Duplicated homeodomain-like superfamily protein (.1) AT1G33240 114 / 2e-26 Trihelix AT-GTL2, AT-GTL1 GT2-LIKE 1, GT-2-like 1 (.1) AT5G47660 86 / 9e-18 Trihelix Homeodomain-like superfamily protein (.1) AT3G10000 86 / 1e-17 Trihelix EDA31 embryo sac development arrest 31, Homeodomain-like superfamily protein (.1.2) AT5G03680 79 / 3e-15 Trihelix PTL PETAL LOSS, Duplicated homeodomain-like superfamily protein (.1) AT3G25990 53 / 3e-07 Trihelix Homeodomain-like superfamily protein (.1) AT1G13450 49 / 7e-06 Trihelix GT-1 GT-1, Homeodomain-like superfamily protein (.1.2.3) AT5G01380 43 / 0.0004 Trihelix Homeodomain-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G051700 [exp] 788 / 0 AT5G28300 276 / 5e-84 Duplicated homeodomain-like superfamily protein (.1) Potri.001G454500 [exp] 131 / 1e-31 AT1G33240 186 / 1e-49 GT2-LIKE 1, GT-2-like 1 (.1) Potri.011G147400 [exp] 129 / 7e-31 AT1G33240 181 / 5e-48 GT2-LIKE 1, GT-2-like 1 (.1) Potri.002G068400 [exp] 123 / 2e-29 AT1G76890 387 / 1e-127 Duplicated homeodomain-like superfamily protein (.2) Potri.005G192000 [exp] 119 / 3e-28 AT1G76890 392 / 6e-130 Duplicated homeodomain-like superfamily protein (.2) Potri.002G068600 [exp] 119 / 4e-28 AT1G76880 441 / 3e-148 Duplicated homeodomain-like superfamily protein (.1) Potri.018G049500 [exp] 112 / 4e-27 AT1G76890 158 / 5e-44 Duplicated homeodomain-like superfamily protein (.2) Potri.018G049301 [exp] 114 / 8e-27 AT1G76890 158 / 2e-42 Duplicated homeodomain-like superfamily protein (.2) Potri.019G010200 [exp] 114 / 1e-26 AT1G76890 219 / 1e-64 Duplicated homeodomain-like superfamily protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015924 [exp] 164 / 1e-43 AT5G28300 231 / 2e-68 Duplicated homeodomain-like superfamily protein (.1) Lus10009184 [exp] 160 / 1e-41 AT1G76890 275 / 1e-83 Duplicated homeodomain-like superfamily protein (.2) Lus10029778 [exp] 123 / 4e-29 AT1G76890 311 / 3e-96 Duplicated homeodomain-like superfamily protein (.2) Lus10018888 [exp] 120 / 3e-28 AT1G76880 360 / 2e-117 Duplicated homeodomain-like superfamily protein (.1) Lus10028584 [exp] 117 / 5e-28 AT1G76880 262 / 5e-81 Duplicated homeodomain-like superfamily protein (.1) Lus10018887 [exp] 117 / 3e-27 AT1G76880 451 / 1e-151 Duplicated homeodomain-like superfamily protein (.1) Lus10042806 [exp] 114 / 2e-26 AT1G76890 337 / 9e-108 Duplicated homeodomain-like superfamily protein (.2) Lus10033504 [exp] 101 / 1e-22 AT1G76890 323 / 8e-105 Duplicated homeodomain-like superfamily protein (.2) Lus10020873 [exp] 100 / 4e-22 AT1G76890 320 / 2e-103 Duplicated homeodomain-like superfamily protein (.2) Lus10028583 [exp] 86 / 1e-19 AT1G76880 125 / 3e-34 Duplicated homeodomain-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF13837 [poplar] [flax] Myb_DNA-bind_4 Myb/SANT-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.013G039100.2 pacid=42812569 polypeptide=Potri.013G039100.2.p locus=Potri.013G039100 ID=Potri.013G039100.2.v4.1 annot-version=v4.1 ATGTTTGAAGGAGTCCCAGAACAATTCCATCAATTCATAGCTTCAAGAACAACATCACTCCCCCCACCTGGTCTCTCTTTTCCTCTTCTCCAGGGATCTT CTAATACTACCAACTTCCCTAGTTTTTATCCTTACACTACCTCTTCTCAACAAGTACCGCTACAGCCAAACCTTTTGCACCCAATATTGCACCAAGGTGC ACCCACCAACAAAGATGGTGAGAAACAAGAGAATAACTTGGTGGCTATGAATATGGACCAGTTTGAAAGAGAAAGATCAATGCCGGAATTGGTCAATCCG TGGTCTAATGATGAAGTGCTTGCACTGTTGAGGATCAGATCTAGCATGGAGACCTGGTTTCCTGAATTCACCTGGGAACATGTATCCAGGAAGCTTGCAG AGGCTGGTTTCAAAAGGAGTGCTGAGAAGTGCAAGGAGAAATTTGAAGAAGAAAGCAGATACTTCAATATTAGCAACATTAATTACAACAAGAATTACAG GGCTAGCTTTAGTGAGTTAGAAGAGATTTATCATGGAGATCAAAACCCTCACCAAGAAGTTACAGCTGGAGAAAAGAACAAAAAGATAGACAAGCCAGGT ACTGAAGATGAAGAACAAGACAAGATGAGACAGAACCTGGAAGAAGAAACGAGAATTGATCAAACGGTAGGAAACCAAACTGATCAAGATAATAATGGGA AATTAGCACTGGTTGAAAAATCAAAGAGCAATAAAAGAAAAAGGGAGAAGAAGTTTGAGATGTTCAAGCGTCTTTGTGAAGATATTGTGAACACCATGAT GGCTCAACAGGAAGAGATGCATAATAAACTTCTTGAAGATATAGTTAAGAGAGATGAAGAGAAGGTTGCAAAAGAAGAAGCACGGAAGAAGCTAGAAATG GATAGGATCAACAAGGAACTTGAACTTAGGGCACATGAACAAGCTCTTGCAAATGATAGACAAGCTACATTAATCAGGTTCTTGAAAAAATTCACATCAA GTGACTCTTCTGTTGAAATTCTTGGAGAGAAAACTGCCCCAGATCCTGTTAATGTACCAAACTCTTCAAATGCTTCCAGTTCATCTTCCTTGGTGCTGGA ACAAAACCCTAATCCAGCTAGTCAGACCAGTAACGAAAGCCAACTTAAAACAGCTACATCATCCGCTACAGCTTTAGACCATCAAAAGTCCACCTCCATT CTAGCCAAAACCAATACCTCATGGACAGAAAATCAAGAACCGCAAAACCCTACCTCAACTCTTGCCCGAAACATTCCACAAGTGCCGACGACTTCATCTA CACTAGCAGTACCTGCAGCCCCCCAAAACCCTAATTTTCTCAATTCTCACAGCAGTACATCAGGACCACCAAACACGTTGCCAAGTCATAATAAAGTGCA AGCAAAGTCTACATATAAAGATGACATTGGCAAGAGATGGCCAAGAGATGAGGTGTTAGCTTTGATAAACCTAAGGTGCAGTCTCTACAACAACAATGAA GACAAAGAAGGATCAGCAAGGGCTCCACTATGGGAAAGAATCTCACAAGGGATGTTGGAATCGGGTTACAAGAGGAGTGCGAAGAGATGCAAGGAAAAAT GGGAGAACATAAACAAGTACTTCAGAAAAACCAAGGATGTTAACAAGAAGAGGTCCATCGATTCAAGGACATGTCCTTACTTTCACCAATTAAGCACCTT GTACAACCAGGGAACACTCGTAGCACCGGATAACCGCTCGGCTTCCCCGGAAAACCGGTCAAGGTTACCAGAAACCAGGCATAGCAGTTCATCTCAAAAT GGGACTAGTAATTCAACATTGCATGTTGGTGATGGTGAGAAAAATATGGTTCAGGTACCACCTTTGGATTTTGAATTCTAA
AA sequence Show only first row Show all	>Potri.013G039100.2 pacid=42812569 polypeptide=Potri.013G039100.2.p locus=Potri.013G039100 ID=Potri.013G039100.2.v4.1 annot-version=v4.1 MFEGVPEQFHQFIASRTTSLPPPGLSFPLLQGSSNTTNFPSFYPYTTSSQQVPLQPNLLHPILHQGAPTNKDGEKQENNLVAMNMDQFERERSMPELVNP WSNDEVLALLRIRSSMETWFPEFTWEHVSRKLAEAGFKRSAEKCKEKFEEESRYFNISNINYNKNYRASFSELEEIYHGDQNPHQEVTAGEKNKKIDKPG TEDEEQDKMRQNLEEETRIDQTVGNQTDQDNNGKLALVEKSKSNKRKREKKFEMFKRLCEDIVNTMMAQQEEMHNKLLEDIVKRDEEKVAKEEARKKLEM DRINKELELRAHEQALANDRQATLIRFLKKFTSSDSSVEILGEKTAPDPVNVPNSSNASSSSSLVLEQNPNPASQTSNESQLKTATSSATALDHQKSTSI LAKTNTSWTENQEPQNPTSTLARNIPQVPTTSSTLAVPAAPQNPNFLNSHSSTSGPPNTLPSHNKVQAKSTYKDDIGKRWPRDEVLALINLRCSLYNNNE DKEGSARAPLWERISQGMLESGYKRSAKRCKEKWENINKYFRKTKDVNKKRSIDSRTCPYFHQLSTLYNQGTLVAPDNRSASPENRSRLPETRHSSSSQN GTSNSTLHVGDGEKNMVQVPPLDFEF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G28300	Trihelix		Duplicated homeodomain-like su...		Potri.013G039100 [exp]	0	1
AT1G29740			Leucine-rich repeat transmembr...		Potri.011G073466 [exp]	1.00	0.9443
AT1G27370	SBP	SPL10	squamosa promoter binding prot...		Potri.014G057800 [exp]	2.44	0.9099
AT4G14550	AUX_IAA	SLR, IAA14	SOLITARY ROOT, indole-3-acetic...		Potri.008G161200 [exp]	2.82	0.9226	IAA14.1
AT3G59420		ACR4	crinkly4 (.1)		Potri.007G128400 [exp]	3.87	0.9238	ACR4.3
AT3G59420		ACR4	crinkly4 (.1)		Potri.017G029900 [exp]	4.00	0.9355	Pt-ACR4.2
AT3G06868			unknown protein		Potri.008G220700 [exp]	5.19	0.9054
AT2G18360			alpha/beta-Hydrolases superfam...		Potri.004G155800 [exp]	5.47	0.9218
AT3G63230			Protein of unknown function (D...		Potri.005G212500 [exp]	8.12	0.8781
AT5G62230		ERL1	ERECTA-like 1 (.1.2)		Potri.012G130400 [exp]	9.16	0.9075	ERL1.2
AT3G17210		ATHS1	A. THALIANA HEAT STABLE PROTEI...		Potri.010G150700 [exp]	16.12	0.8829

Compare expression of checked genes

Potri.013G039100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.