Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04790 379 / 1e-133 EMB3119 EMBRYO DEFECTIVE 3119, Ribose 5-phosphate isomerase, type A protein (.1) AT2G01290 305 / 1e-104 RPI2 ribose-5-phosphate isomerase 2 (.1) AT1G71100 289 / 4e-98 RSW10 RADIAL SWELLING 10, Ribose 5-phosphate isomerase, type A protein (.1) AT5G44520 103 / 7e-26 NagB/RpiA/CoA transferase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G052000 [exp] 498 / 2e-180 AT3G04790 354 / 9e-124 EMBRYO DEFECTIVE 3119, Ribose 5-phosphate isomerase, type A protein (.1) Potri.001G225700 [exp] 298 / 2e-101 AT2G01290 378 / 1e-133 ribose-5-phosphate isomerase 2 (.1) Potri.010G115300 [exp] 286 / 6e-97 AT2G01290 368 / 1e-129 ribose-5-phosphate isomerase 2 (.1) Potri.008G127600 [exp] 284 / 3e-96 AT2G01290 365 / 2e-128 ribose-5-phosphate isomerase 2 (.1) Potri.006G039800 [exp] 129 / 5e-34 AT1G71100 122 / 2e-31 RADIAL SWELLING 10, Ribose 5-phosphate isomerase, type A protein (.1) Potri.011G155500 [exp] 111 / 9e-29 AT5G44520 294 / 7e-100 NagB/RpiA/CoA transferase-like superfamily protein (.1) Potri.006G039700 [exp] 110 / 3e-27 AT3G04790 122 / 2e-31 EMBRYO DEFECTIVE 3119, Ribose 5-phosphate isomerase, type A protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015919 [exp] 437 / 4e-156 AT3G04790 390 / 4e-138 EMBRYO DEFECTIVE 3119, Ribose 5-phosphate isomerase, type A protein (.1) Lus10009180 [exp] 347 / 4e-121 AT3G04790 318 / 8e-110 EMBRYO DEFECTIVE 3119, Ribose 5-phosphate isomerase, type A protein (.1) Lus10036094 [exp] 288 / 5e-98 AT2G01290 342 / 2e-119 ribose-5-phosphate isomerase 2 (.1) Lus10032450 [exp] 286 / 9e-97 AT1G71100 362 / 3e-127 RADIAL SWELLING 10, Ribose 5-phosphate isomerase, type A protein (.1) Lus10026777 [exp] 285 / 1e-96 AT1G71100 344 / 3e-120 RADIAL SWELLING 10, Ribose 5-phosphate isomerase, type A protein (.1) Lus10042951 [exp] 282 / 2e-95 AT1G71100 356 / 4e-125 RADIAL SWELLING 10, Ribose 5-phosphate isomerase, type A protein (.1) Lus10009181 [exp] 140 / 3e-42 AT3G04790 126 / 1e-37 EMBRYO DEFECTIVE 3119, Ribose 5-phosphate isomerase, type A protein (.1) Lus10017770 [exp] 89 / 2e-22 AT3G04790 85 / 2e-21 EMBRYO DEFECTIVE 3119, Ribose 5-phosphate isomerase, type A protein (.1) Lus10008059 [exp] 92 / 3e-21 AT5G44520 290 / 4e-98 NagB/RpiA/CoA transferase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0246 [poplar] [flax] ISOCOT_Fold PF06026 [poplar] [flax] Rib_5-P_isom_A Ribose 5-phosphate isomerase A (phosphoriboisomerase A)
Representative CDS sequence Show only first row Show all	>Potri.013G039400.1 pacid=42812718 polypeptide=Potri.013G039400.1.p locus=Potri.013G039400 ID=Potri.013G039400.1.v4.1 annot-version=v4.1 ATGGCCTCCTTATCCTTCCTCTCCCCTCCTTCCTCCTCCTCTCTTTCCTCCCTCCACAACACCACCCCTTCCTCCTCCCGCCTCTTCTTACGCACACCCT CCCTTAACCTCCGCGCCCCAACCAAAATCTTCTCCCTTAAAGCCCAATCCGCCCCAGTCCTCACCCAAGACGAACTTAAAAAGATCGCAGCCGACAAAGC CGTCGAGTATGTCAAATCCGGCATGGTCCTCGGCCTTGGAACCGGCTCTACCGCCGCCTTCGTGGTAGCCAAACTCGGCGAGCTCTTAAAAACCGGTGAA CTGACAAATATCATTGGAGTCCCAACTTCAAAACGCACAGAAGAACAGGCTCGTTCTCTTAACATCCCTCTTTCAATACTCGATGACCACCCCCACATTG ATCTTGCCATTGACGGGGCTGATGAGGTGGACCCACTACTTAATTTAGTGAAGGGTCGCGGCGGAGCCCTTTTAAGAGAGAAAATGGTTGAAGCAGCATC AGATGAGTTTGTTGTTGTTGCTGATGAGACTAAGCTTGTTGATGGTCTTGGTGGAAGTAAACTGGCAATGCCAGTTGAAGTAGTGCAATTTTGTTGGAAA TTTAATTTGGTGAGGTTACAAGAGTTGTTTAAAGATGAAGGGGTTGAGGCTAAATTGAGAGTTGGTGAAGATGGGAAGCCCTATGTGACCGATAATTTTA ATTATATTGTTGATTTGTATTTTGAGAATCCGATTAAAGATGGATATGCGGCCGGAAAGGAGATTTCGGGGCTTGAAGGTGTTGTGGAACATGGGTTGTT TTTGGATATGGCGACCGCGGTTATTATTGCTGGGAAGACTGGAGTTGAGGTTAAAAGCAAGTGA
AA sequence Show only first row Show all	>Potri.013G039400.1 pacid=42812718 polypeptide=Potri.013G039400.1.p locus=Potri.013G039400 ID=Potri.013G039400.1.v4.1 annot-version=v4.1 MASLSFLSPPSSSSLSSLHNTTPSSSRLFLRTPSLNLRAPTKIFSLKAQSAPVLTQDELKKIAADKAVEYVKSGMVLGLGTGSTAAFVVAKLGELLKTGE LTNIIGVPTSKRTEEQARSLNIPLSILDDHPHIDLAIDGADEVDPLLNLVKGRGGALLREKMVEAASDEFVVVADETKLVDGLGGSKLAMPVEVVQFCWK FNLVRLQELFKDEGVEAKLRVGEDGKPYVTDNFNYIVDLYFENPIKDGYAAGKEISGLEGVVEHGLFLDMATAVIIAGKTGVEVKSK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G04790		EMB3119	EMBRYO DEFECTIVE 3119, Ribose ...		Potri.013G039400 [exp]	0	1
AT1G75460			ATP-dependent protease La (LON...		Potri.005G232800 [exp]	3.00	0.9603
AT5G58260		NdhN	NADH dehydrogenase-like comple...		Potri.013G160600 [exp]	3.00	0.9700
					Potri.004G048000 [exp]	7.48	0.9529
AT4G09650		PDE332, ATPD	PIGMENT DEFECTIVE 332, ATP syn...		Potri.013G117000 [exp]	10.09	0.9610
AT5G08050			Protein of unknown function (D...		Potri.015G058600 [exp]	12.12	0.9535
AT1G22630			unknown protein		Potri.013G108100 [exp]	12.64	0.9577
AT5G07580	AP2_ERF		Integrase-type DNA-binding sup...		Potri.001G079600 [exp]	14.45	0.9480
AT1G67740		YCF32, PSBY	photosystem II BY (.1)		Potri.008G181900 [exp]	14.56	0.9582	PSBY.1
AT5G19855		AtRbcX2	homologue of cyanobacterial Rb...		Potri.009G053300 [exp]	16.49	0.9443
AT1G34000		OHP2	one-helix protein 2 (.1)		Potri.002G065000 [exp]	17.02	0.9523	Lil6_1,OHP2.2

Compare expression of checked genes

Potri.013G039400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.