Plant FIBer expression Database

Potri.013G039600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G49570 834 / 0 ATPNG1 peptide-N-glycanase 1 (.1)
AT5G16630 46 / 0.0001 ATRAD4 DNA repair protein Rad4 family (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G087400
[exp]
45 / 0.0001 AT5G16630 786 / 0.0 DNA repair protein Rad4 family (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10009179
[exp]
892 / 0 AT5G49570 817 / 0.0 peptide-N-glycanase 1 (.1)
Lus10015918
[exp]
141 / 3e-39 AT5G49570 122 / 2e-33 peptide-N-glycanase 1 (.1)
Lus10004055
[exp]
54 / 5e-07 AT5G16630 771 / 0.0 DNA repair protein Rad4 family (.1.2)
Lus10002285
[exp]
49 / 1e-05 AT5G16630 668 / 0.0 DNA repair protein Rad4 family (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0125 Peptidase_CA PF03835 Rad4 Rad4 transglutaminase-like domain
Representative CDS sequence
>Potri.013G039600.1 pacid=42812081 polypeptide=Potri.013G039600.1.p locus=Potri.013G039600 ID=Potri.013G039600.1.v4.1 annot-version=v4.1
ATGGTAGCTCGCCAATTCATCATCAGCCACAACGACTCCATCTTCGACGTCGATTATGACACCGACGACGGCCTCGAAGTTCTTAAGATCCAGCTTTTCT
CTCTCACTTCAATCCCTCCTCATCTCCAGCAGATCACCGGAGAAGATGATGATCGAGTCGTATCGGACGATTCTGATCTCACTGGCATTTCTAACAAACT
CAAATTGATAAAAATCAACGAGGAAGAGAAGGAAGTCAAGTTACAAGAATCAATTGCCGCTGTTGTTGGGCAGCAAAATGAAGAGGAATCAATTCGTGAT
GTGCCGATTCTTGGAGGAGATGACGTGTCGGATGATTCTGATGTCGTTCATGTTTCGAATGAACTCAAAGAATTAACTGTTGCCGATTTGATGAAATCGG
ATGAGGAACTTGCGCAGATGTTACAGGCAGAGGAGGAAGCGCTTATGTTGCAAGAGTTTGCAGTGAGTGAACAAAGTGATGAGTTTGGGCAGAAAATACG
GCCCTATATCAGTCAAGTACAAATGTATGAAGACCCAGTGAGGCAGGAGGCAGCACGGAAGACGGTTCCTAGAGAAGAGCTTGAGGAGAAAGCTTTGGTT
TCTCTGGCAAAGGAGGGGAACTTCAAACCATCAAAAACCGAACAAGACCATGCTTTTCTGCTGCAGCTGCTTTTCTGGTTCAAACAATCATTCAGGTGGG
TTAATGAACCTCCTTGTGATGGCTGTGGCAATGATACCGTTAATCAAGGAATGGATGCTGCACTTCCTTCAGAAACTCAATATGGAGCAGCTCGAGTTGA
ACTTTACCGCTGCAATTCTTGTTCAACAATTACCCGTTTCCCACGCTACAATGATCCGTTAAAGCTTGTGGAAACTCGAAGGGGTCGCTGTGGGGAATGG
GCCAATTGCTTTACTCTTTATTGTCGTGCTTTTGGCTATGAATCTCGTCTGATCCTGGATTTCACTGATCACGTTTGGACCGAGTGCTTTTCTGAATTAC
TAGGCAGATGGATGCATCTTGACCCTTGTGACGGAGTGTTTGACAGACCATTACTATATGAGAAGGGGTGGAATAAGAAATTGAACTATGTTATTGCTAT
TGCAAAAGATGGAGTTTATGACGTCACTAAGCGTTACACAAGGAAGTGGGTTGAGGTTCTATCCCGACGAAACATTACCAGAGAGCCTGATTTGTTGGCT
ACTCTCCGTAGCATGACTCGAGAATGCAGAAGAAGCTTTACAACTCAAATTCTTTCTGTACTTGAAGACCGTGATAAGATTGAATCAGAAGAGCTTGAGA
GATCTTTATGTTCCACTAATGATTCTTCAGTCTCATTGCCTGGTAGACAAAGTGGGAACAAGGAATGGCGCATTGCAAGATCAGAAATTGGTTTTCATGA
TAATTGTTGTTGGAGTCATACTTCATGTCCCATTCGTGTATGCGTAGATGAGCATGTGACAAAGACTTACAATGCATTTTCCCCTCTCCTTTCTCGTTGT
GTTGACCACTCTCTTCCCAAATCAAGAATTGTTGAAATACTGAAGATATTCAAAGGAATTTTGGTGGAACTTGGGAATTCGTCCTATAAAACCAGGCGAA
CTTCCATAAACCCTTTTATACTTCATTTGCTGCCATATTTTGACGAGTTAATAAATGCTCTGTCATTGAAGAGCGAGATTGACACTGATGGAAAAGTGGA
CATCTGTTTGGCTGCTGACCCTGTCATCACCTCTTTAGGACTGCCTGTTGTGCTGGATGCATTGGATGATTTGATCAATGTTCTTAACAACTTTGACAAC
ATAAGCAAAGTTTCTCTTTCCTGGCCACTAATAAAGTTGAATAGGATCCATTCAGGTTCTGTTCTTGCAAGTGGCGAGGAACTTCCTTTTGGAATTGCCA
CATCAGCATTTGATGGACTTCGCACGTCTAAATGGGTAGAACCAGATGGAGCGAGAGGTTGCTGGATTGTTTATAAACTATCAGACAACCAGATGCACAA
ACTAGTGGCATATGATATAATGTCAGCTAATGATGCCCCAGAGAGAGACCCTATGGACTGGGTTGTCGAGGGTAGTGATGATGGTGGTTCTAGCTGGCGT
ATTCTGGATAAACGAACTTCTCAGATGTTCAAAAATCGTTTTCAGCGTAAATCATTTAAGATTAATTCAGATAGTGTCCCATGCAACACTTTCAGATTCC
AATTTCTGGCTGCCAGAGACGTTCAATCAAATTCACGCCTACAATTGGGTAGCATAGATCTGTATGCAAGCAGCGATTAA
AA sequence
>Potri.013G039600.1 pacid=42812081 polypeptide=Potri.013G039600.1.p locus=Potri.013G039600 ID=Potri.013G039600.1.v4.1 annot-version=v4.1
MVARQFIISHNDSIFDVDYDTDDGLEVLKIQLFSLTSIPPHLQQITGEDDDRVVSDDSDLTGISNKLKLIKINEEEKEVKLQESIAAVVGQQNEEESIRD
VPILGGDDVSDDSDVVHVSNELKELTVADLMKSDEELAQMLQAEEEALMLQEFAVSEQSDEFGQKIRPYISQVQMYEDPVRQEAARKTVPREELEEKALV
SLAKEGNFKPSKTEQDHAFLLQLLFWFKQSFRWVNEPPCDGCGNDTVNQGMDAALPSETQYGAARVELYRCNSCSTITRFPRYNDPLKLVETRRGRCGEW
ANCFTLYCRAFGYESRLILDFTDHVWTECFSELLGRWMHLDPCDGVFDRPLLYEKGWNKKLNYVIAIAKDGVYDVTKRYTRKWVEVLSRRNITREPDLLA
TLRSMTRECRRSFTTQILSVLEDRDKIESEELERSLCSTNDSSVSLPGRQSGNKEWRIARSEIGFHDNCCWSHTSCPIRVCVDEHVTKTYNAFSPLLSRC
VDHSLPKSRIVEILKIFKGILVELGNSSYKTRRTSINPFILHLLPYFDELINALSLKSEIDTDGKVDICLAADPVITSLGLPVVLDALDDLINVLNNFDN
ISKVSLSWPLIKLNRIHSGSVLASGEELPFGIATSAFDGLRTSKWVEPDGARGCWIVYKLSDNQMHKLVAYDIMSANDAPERDPMDWVVEGSDDGGSSWR
ILDKRTSQMFKNRFQRKSFKINSDSVPCNTFRFQFLAARDVQSNSRLQLGSIDLYASSD

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G49570 ATPNG1 peptide-N-glycanase 1 (.1) Potri.013G039600
[exp]
0 1
AT1G04120 ATABCC5, ABCC5,... MULTIDRUG RESISTANCE PROTEIN 5... Potri.014G193400
[exp]
2.00 0.8664 Pt-MRP5.2
AT5G19280 FHA RAG1, KAPP ROOT ATTENUATED GROWTH 1, kina... Potri.008G149700
[exp]
6.48 0.8107
Potri.006G273733
[exp]
8.00 0.8452
AT1G05790 lipase class 3 family protein ... Potri.014G150800
[exp]
8.00 0.7958
AT4G17070 peptidyl-prolyl cis-trans isom... Potri.002G139600
[exp]
11.83 0.8355
AT5G39590 TLD-domain containing nucleola... Potri.002G024966
[exp]
12.84 0.8232
AT4G10550 Subtilase family protein (.1.2... Potri.004G161400
[exp]
13.07 0.8148
AT3G21090 ABCG15 ATP-binding cassette G15, ABC-... Potri.001G255900
[exp]
15.39 0.8665
AT1G69480 EXS (ERD1/XPR1/SYG1) family pr... Potri.010G165001
[exp]
16.70 0.7962
AT3G61420 BSD domain (BTF2-like transcri... Potri.005G061366
[exp]
19.74 0.8482

Potri.013G039600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.