Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G29250 218 / 2e-65 HXXXD-type acyl-transferase family protein (.1) AT3G23840 113 / 2e-27 HXXXD-type acyl-transferase family protein (.1) AT4G24510 101 / 3e-23 VC2, VC-2, CER2 ECERIFERUM 2, HXXXD-type acyl-transferase family protein (.1) AT4G13840 101 / 4e-23 HXXXD-type acyl-transferase family protein (.1) AT2G19070 98 / 8e-22 SHT spermidine hydroxycinnamoyl transferase (.1) AT5G63560 96 / 2e-21 HXXXD-type acyl-transferase family protein (.1) AT3G48720 95 / 5e-21 DCF DEFICIENT IN CUTIN FERULATE, HXXXD-type acyl-transferase family protein (.1) AT5G41040 90 / 4e-19 HXXXD-type acyl-transferase family protein (.1.2) AT5G48930 89 / 9e-19 HCT hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) AT5G57840 85 / 1e-17 HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G052200 [exp] 796 / 0 AT4G29250 207 / 9e-62 HXXXD-type acyl-transferase family protein (.1) Potri.018G032700 [exp] 242 / 5e-75 AT4G29250 437 / 5e-151 HXXXD-type acyl-transferase family protein (.1) Potri.005G153600 [exp] 113 / 3e-27 AT4G24510 313 / 4e-103 ECERIFERUM 2, HXXXD-type acyl-transferase family protein (.1) Potri.014G166600 [exp] 111 / 2e-26 AT5G41040 394 / 2e-134 HXXXD-type acyl-transferase family protein (.1.2) Potri.018G105500 [exp] 107 / 3e-25 AT5G48930 556 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.018G104700 [exp] 107 / 6e-25 AT5G48930 489 / 5e-172 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.005G028000 [exp] 107 / 6e-25 AT5G48930 504 / 6e-178 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.001G042900 [exp] 104 / 3e-24 AT5G48930 749 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.005G028100 [exp] 100 / 7e-23 AT5G48930 509 / 5e-180 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028335 [exp] 213 / 2e-63 AT4G29250 365 / 1e-122 HXXXD-type acyl-transferase family protein (.1) Lus10041782 [exp] 207 / 4e-61 AT4G29250 348 / 8e-116 HXXXD-type acyl-transferase family protein (.1) Lus10032020 [exp] 105 / 5e-24 AT5G41040 443 / 2e-151 HXXXD-type acyl-transferase family protein (.1.2) Lus10032019 [exp] 103 / 2e-23 AT5G41040 446 / 1e-154 HXXXD-type acyl-transferase family protein (.1.2) Lus10012552 [exp] 101 / 6e-23 AT5G41040 642 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Lus10035189 [exp] 99 / 3e-22 AT5G41040 440 / 2e-152 HXXXD-type acyl-transferase family protein (.1.2) Lus10005439 [exp] 92 / 7e-20 AT5G41040 364 / 2e-122 HXXXD-type acyl-transferase family protein (.1.2) Lus10022163 [exp] 92 / 7e-20 AT5G48930 449 / 2e-156 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Lus10005358 [exp] 92 / 8e-20 AT2G19070 471 / 2e-164 spermidine hydroxycinnamoyl transferase (.1) Lus10016638 [exp] 92 / 1e-19 AT4G13840 315 / 2e-103 HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [poplar] [flax] CoA-acyltrans PF02458 [poplar] [flax] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Potri.013G039700.1 pacid=42811732 polypeptide=Potri.013G039700.1.p locus=Potri.013G039700 ID=Potri.013G039700.1.v4.1 annot-version=v4.1 ATGCGCTGCCTTCTTCTCTCTGAACATCCTGTCCAGGTTTTGTTCTTTGCCTCTTTTAGTGAAAAAATGGTGAAAAAAAATAGCAGGGTTAGTGTCCATT CAATGTTAACGGCAGTATCCAGTCAGCCAGTCGGGTCGGGTAAAACTCATCCATTATCAGTACTTGATCATGCAATGGGTCTCCATACAATACATGTAGT TTTTTACTACAAGAAAAACCCATTTGGGATTTTTGACGTAGATCCTTTAAGGATTGCTCTGTCAGAGGTTCTTTGTTTGTACCCACAAGTTACGGGTCGG TTGACCCGAGGGGAGTCGGGTAATTGGTTAGTGAAGTGTAATGATGCTGGTGTTAGAGTTCTGAGAGCAAAAGTTGAGGCCACCATGGATGAATGGCTGA GATCAGCTGATAGTTCAGAGGAGAAAGATTTAACGTTTTGGGAGGAAATTCCCGAGGAACCTAGTACATGGTCACCCTTCCGAATTCAGGTAAATGAATT TGAAGGAGGAGGTGTAGCTTTTGGGCTAAGTTGTACACACATGAATGCAGACCCAACTTCCATAACTATACTCTTCAAATCCTGGATTGAGAGTCACCGC CAGGAGCCCATTGAGCACCCACCCCTGTTCAGCTCAACCACCCTCCATCACCAACAAGTTCCTAATACTAGCACTAAATCAGACAATTACTGTGCAACTA AGGGCAATGCAGAAACTCCCTCGGTGAAAATGGTCACAGCCACGTTCAAGTTCTCTGATTCAGCAATCAAGAAATGGCTTGACGAAGTGCATGATCAATG TGCTAAAGCTACTCCTTTTGAATTGCTAGCTGCACTCTTTTGGACACGTGTTGCACATCTAAAGGCTCCAAAAAATGACAACAAACACTCCCTCTCAATT TGCTTGGACTTTAGAAGGCTAGTGCAGCCACCAATTTCTCTTGGTTACTTTGGCAATGCATTGCATTTTTCACTGCTGACACTAGATGAGGAAGAAATGG ACTACGGTAAGTTGGGACATGTGGTGGAGTTGGTGCATCGCCATATTTCAGATGTACGGGAAGAGGAGGTTTGGTCTGTTGTAGATTGGTTTGAATCACA GAAGGAAGAGGGAGGGAAGTATGCAGAACCTTTCAGAATGTATGGTCCTGAGCTAACTTGTGTCAGCATGGAACACATAATAATAGGGCATAAATCGTTG ATGTTCTCAGCAAGTTTCAAGAGTGATGAAAAACCAGTTCACGTTTCATGTCATGTTGGAAATGTGAGGGGTGAAGGTCTGATTGTGGTGCTGCCTTCAG TAGAAGAAGGGCTTGCAAGGACAGTGATGGTAACCTTGCCAGAGGAGGAGATGCCTAAATTATGCGAGGATCAAGCTATCCAGTGTCTACAACCAACAAT GCTGATAGGTGGAAGATAA
AA sequence Show only first row Show all	>Potri.013G039700.1 pacid=42811732 polypeptide=Potri.013G039700.1.p locus=Potri.013G039700 ID=Potri.013G039700.1.v4.1 annot-version=v4.1 MRCLLLSEHPVQVLFFASFSEKMVKKNSRVSVHSMLTAVSSQPVGSGKTHPLSVLDHAMGLHTIHVVFYYKKNPFGIFDVDPLRIALSEVLCLYPQVTGR LTRGESGNWLVKCNDAGVRVLRAKVEATMDEWLRSADSSEEKDLTFWEEIPEEPSTWSPFRIQVNEFEGGGVAFGLSCTHMNADPTSITILFKSWIESHR QEPIEHPPLFSSTTLHHQQVPNTSTKSDNYCATKGNAETPSVKMVTATFKFSDSAIKKWLDEVHDQCAKATPFELLAALFWTRVAHLKAPKNDNKHSLSI CLDFRRLVQPPISLGYFGNALHFSLLTLDEEEMDYGKLGHVVELVHRHISDVREEEVWSVVDWFESQKEEGGKYAEPFRMYGPELTCVSMEHIIIGHKSL MFSASFKSDEKPVHVSCHVGNVRGEGLIVVLPSVEEGLARTVMVTLPEEEMPKLCEDQAIQCLQPTMLIGGR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G29250			HXXXD-type acyl-transferase fa...		Potri.013G039700 [exp]	0	1
AT5G06720		ATPA2	peroxidase 2 (.1)		Potri.003G214700 [exp]	11.31	0.9085
AT3G54200			Late embryogenesis abundant (L...		Potri.006G112800 [exp]	15.09	0.9536
AT5G06720		ATPA2	peroxidase 2 (.1)		Potri.003G214800 [exp]	24.81	0.9468	Pt-PRX1.16
AT4G16740		ATTPS03	terpene synthase 03 (.1.2)		Potri.019G023000 [exp]	27.83	0.9420
AT3G49190			O-acyltransferase (WSD1-like) ...		Potri.017G010500 [exp]	31.08	0.9367
AT3G11480		BSMT1, ATBSMT1	S-adenosyl-L-methionine-depend...		Potri.019G022000 [exp]	34.49	0.9363
AT3G25830		ATTPS-CIN	"terpene synthase-like sequenc...		Potri.019G022338 [exp]	36.44	0.9344
AT4G15960			alpha/beta-Hydrolases superfam...		Potri.010G010900 [exp]	36.87	0.8060
AT5G33370			GDSL-like Lipase/Acylhydrolase...		Potri.013G051100 [exp]	40.36	0.9340
AT3G11480		BSMT1, ATBSMT1	S-adenosyl-L-methionine-depend...		Potri.019G022400 [exp]	41.71	0.9339

Compare expression of checked genes

Potri.013G039700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.