Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G60710 377 / 1e-130 ATB2 NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G60690 377 / 2e-130 NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G60680 375 / 1e-129 AGD2 NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G60730 370 / 7e-128 NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2), NAD(P)-linked oxidoreductase superfamily protein (.3) AT1G60750 367 / 4e-127 NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G10810 355 / 3e-122 NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G04690 116 / 1e-29 KV-BETA1, KAB1 potassium channel beta subunit 1 (.1) AT1G06690 106 / 8e-26 NAD(P)-linked oxidoreductase superfamily protein (.1) AT4G33670 98 / 5e-23 NAD(P)-linked oxidoreductase superfamily protein (.1) AT5G53580 92 / 8e-21 AtPLR1 pyridoxal reductase 1, NAD(P)-linked oxidoreductase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G040100 [exp] 652 / 0 AT1G60710 369 / 1e-127 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.005G052400 [exp] 545 / 0 AT1G60680 395 / 1e-137 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.008G158300 [exp] 458 / 1e-162 AT1G60680 389 / 2e-135 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.002G234201 [exp] 372 / 7e-129 AT1G60710 547 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.002G234000 [exp] 372 / 7e-129 AT1G60690 524 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.014G147700 [exp] 372 / 9e-129 AT1G60710 559 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.001G052100 [exp] 110 / 1e-27 AT1G04690 602 / 0.0 potassium channel beta subunit 1 (.1) Potri.005G207100 [exp] 103 / 8e-25 AT1G06690 526 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.005G207000 [exp] 103 / 1e-24 AT1G06690 589 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029615 [exp] 478 / 2e-170 AT1G60710 399 / 2e-139 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10041185 [exp] 451 / 1e-159 AT1G60750 384 / 2e-133 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10041184 [exp] 439 / 5e-155 AT1G60690 374 / 1e-129 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10037437 [exp] 376 / 2e-130 AT1G60690 571 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10041272 [exp] 374 / 2e-129 AT1G60710 571 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10006105 [exp] 373 / 5e-129 AT1G60690 554 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10023701 [exp] 362 / 8e-125 AT1G60690 527 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10041303 [exp] 264 / 4e-87 AT1G60690 419 / 1e-148 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10037408 [exp] 220 / 5e-70 AT1G60730 311 / 6e-106 NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2), NAD(P)-linked oxidoreductase superfamily protein (.3) Lus10010566 [exp] 136 / 2e-39 AT1G10810 198 / 3e-64 NAD(P)-linked oxidoreductase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00248 [poplar] [flax] Aldo_ket_red Aldo/keto reductase family
Representative CDS sequence Show only first row Show all	>Potri.013G040000.1 pacid=42810722 polypeptide=Potri.013G040000.1.p locus=Potri.013G040000 ID=Potri.013G040000.1.v4.1 annot-version=v4.1 ATGGCCGAGGAGCAGAAAGTTATCATTCCAAGAGTGAAACTGGGTAACCAAGGATTAGAGGTCTCAAAGTTGGGCTTTGGATGCATGGGGCTTTCTGGAA TGTACAATGCCCCCCTCCCTGAAGAGGTTGTCATTTCAATCATCAAGGAAGCTTATAGCAAGGGGATTACTTTTTTTGATACAGCAGATGTTTATGGACC TCACACTAATGAAATCGTGGTTGGGAAGGCATTGAAGCATTTGCCTAGAGAAAAGATCCAGTTGGCTACAAAATTTGGCATTGTTCCAAACGGTTCTGAT TTTAAAAATTGTGCAATCAATGGCAGTCCTGAATACATCCGTGCATGTTGCGATGCTAGCCTGAAGCGTCTAGATCTGGAGTACATTGATCTCTACTATC AGCACCGTACCGACACTTCCGTTCCAATAGAGGAAACTATGGGAGAGCTTAAGAAGTTAGTGGAAGAGGGAAAAGTTAAGTATATTGGATTATCCGAAGC AAGTCCCGACACAATAAAGAGGGCACATGCAGTCCATCCCATTAGTGCAGTACAAATGGAATGGTCACTTTGGTCTCGTGACATTGAAGAAGAAATAATC CCACTTTGCAGGGAACTTGGAATTGCAGTAGTTCCATATAGCCCTATCGGTCGTGGTTTTTTTGGTGGCAGAGCAGTCATGGAAAGTTTGCCTTCGGAGA CTGTACTGAAATTACATCCAAGGTTCACAGAAGAAAATATCGAGAAGAACAAGGTGTTTTATTCTCGAATAGAAAAACTGGCTGCAAAGCATGGCTGTAC TCCTGCTCAGCTTGCCCTTGCTTGGGTTATCAATCAAGGGGATGATGTGGTGCCTATCCCTGGAACCACTAAGATTAAAAATCTGTACGAAAATGTTGGA TCATTGCAAGTTAAGCTGACAAAAGAAGATTTAAAGGAGATCTCCGATGCTGTTCCCATCAATGAAGTGGCTGGAGTAAGATCTCCGCAGTATCAACTTA CATGGAAGTTCGCTGACACACCACAACCTAAAAAGAGCCAAGTCTGA
AA sequence Show only first row Show all	>Potri.013G040000.1 pacid=42810722 polypeptide=Potri.013G040000.1.p locus=Potri.013G040000 ID=Potri.013G040000.1.v4.1 annot-version=v4.1 MAEEQKVIIPRVKLGNQGLEVSKLGFGCMGLSGMYNAPLPEEVVISIIKEAYSKGITFFDTADVYGPHTNEIVVGKALKHLPREKIQLATKFGIVPNGSD FKNCAINGSPEYIRACCDASLKRLDLEYIDLYYQHRTDTSVPIEETMGELKKLVEEGKVKYIGLSEASPDTIKRAHAVHPISAVQMEWSLWSRDIEEEII PLCRELGIAVVPYSPIGRGFFGGRAVMESLPSETVLKLHPRFTEENIEKNKVFYSRIEKLAAKHGCTPAQLALAWVINQGDDVVPIPGTTKIKNLYENVG SLQVKLTKEDLKEISDAVPINEVAGVRSPQYQLTWKFADTPQPKKSQV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G60710		ATB2	NAD(P)-linked oxidoreductase s...		Potri.013G040000 [exp]	0	1
AT1G60710		ATB2	NAD(P)-linked oxidoreductase s...		Potri.013G040100 [exp]	1.00	0.9398
AT1G47480			alpha/beta-Hydrolases superfam...		Potri.009G104700 [exp]	1.41	0.8699
					Potri.007G065250 [exp]	8.00	0.8101
					Potri.009G149000 [exp]	10.77	0.8459
AT4G26740		CLO1, ATPXG1, A...	CALEOSIN1, ARABIDOPSIS THALIAN...		Potri.010G066600 [exp]	12.64	0.7927	Pt-GMPM13.1
AT4G39955			alpha/beta-Hydrolases superfam...		Potri.005G074066 [exp]	13.00	0.8124
AT4G29050			Concanavalin A-like lectin pro...		Potri.003G196600 [exp]	14.66	0.8414
AT2G41180		SIB2	sigma factor binding protein 2...		Potri.013G043800 [exp]	15.42	0.8322
AT4G23420			NAD(P)-binding Rossmann-fold s...		Potri.003G128800 [exp]	15.49	0.8500
					Potri.014G025451 [exp]	15.68	0.7874

Compare expression of checked genes

Potri.013G040000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.