Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22930 210 / 9e-71 CML11 calmodulin-like 11 (.1) AT4G14640 208 / 3e-70 CAM8, AtCML8 calmodulin-like 8, calmodulin 8 (.1) AT5G37780 196 / 3e-65 ACAM-1, TCH1, CAM1 TOUCH 1, calmodulin 1 (.1.2.3) AT1G66410 196 / 3e-65 ACAM-4, CAM4 calmodulin 4 (.1.2) AT2G41110 195 / 6e-65 ACAM-2, ATCAL5, CAM2 calmodulin 2 (.1.2) AT2G27030 195 / 6e-65 CAM5, CAM2, ACAM-2, ACAM-5 calmodulin 5 (.1.2.3) AT3G56800 195 / 6e-65 ACAM-3, CAM3 calmodulin 3 (.1) AT3G43810 194 / 7e-65 CAM7 calmodulin 7 (.1) AT5G21274 194 / 2e-64 ACAM-6, CAM6 calmodulin 6 (.1) AT3G51920 137 / 3e-42 CML9, CAM9, ATCML9 CALMODULIN LIKE PROTEIN 9, calmodulin 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G052800 [exp] 247 / 1e-85 AT4G14640 228 / 7e-78 calmodulin-like 8, calmodulin 8 (.1) Potri.008G159300 [exp] 218 / 7e-74 AT3G22930 235 / 1e-80 calmodulin-like 11 (.1) Potri.010G080900 [exp] 217 / 1e-73 AT4G14640 270 / 2e-94 calmodulin-like 8, calmodulin 8 (.1) Potri.015G032600 [exp] 201 / 3e-67 AT5G37780 284 / 3e-100 TOUCH 1, calmodulin 1 (.1.2.3) Potri.012G041000 [exp] 200 / 4e-67 AT5G37780 283 / 9e-100 TOUCH 1, calmodulin 1 (.1.2.3) Potri.001G222200 [exp] 197 / 4e-65 AT2G27030 304 / 6e-107 calmodulin 5 (.1.2.3) Potri.016G024700 [exp] 194 / 7e-65 AT3G43810 300 / 2e-106 calmodulin 7 (.1) Potri.009G021500 [exp] 194 / 7e-65 AT3G43810 300 / 2e-106 calmodulin 7 (.1) Potri.006G026700 [exp] 194 / 7e-65 AT3G43810 300 / 2e-106 calmodulin 7 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039391 [exp] 216 / 3e-73 AT4G14640 268 / 1e-93 calmodulin-like 8, calmodulin 8 (.1) Lus10041288 [exp] 194 / 8e-65 AT2G27030 300 / 2e-106 calmodulin 5 (.1.2.3) Lus10037423 [exp] 194 / 8e-65 AT2G27030 300 / 2e-106 calmodulin 5 (.1.2.3) Lus10038981 [exp] 194 / 8e-65 AT2G27030 300 / 2e-106 calmodulin 5 (.1.2.3) Lus10027283 [exp] 194 / 8e-65 AT2G27030 300 / 2e-106 calmodulin 5 (.1.2.3) Lus10001775 [exp] 187 / 6e-62 AT2G27030 192 / 1e-63 calmodulin 5 (.1.2.3) Lus10009176 [exp] 174 / 1e-56 AT2G27030 186 / 3e-61 calmodulin 5 (.1.2.3) Lus10022589 [exp] 166 / 3e-53 AT3G43810 255 / 2e-88 calmodulin 7 (.1) Lus10024830 [exp] 162 / 6e-52 AT4G14640 176 / 2e-57 calmodulin-like 8, calmodulin 8 (.1) Lus10021487 [exp] 153 / 3e-48 AT2G41110 255 / 1e-88 calmodulin 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [poplar] [flax] EF_hand PF13499 [poplar] [flax] EF-hand_7 EF-hand domain pair
Representative CDS sequence Show only first row Show all	>Potri.013G040300.2 pacid=42812327 polypeptide=Potri.013G040300.2.p locus=Potri.013G040300 ID=Potri.013G040300.2.v4.1 annot-version=v4.1 ATGGTGGATGTGTTTACAGAGAAGCAGATTGCTGAGTTCCAAGAAGCCTTTTGTCTATCTGACAAGGATGGAGATGGGCGCATTACCTTTGAGGAACTGG CCACTGTAATCAAATCTCTTGACCATGGCGCCACAGAAGAAGAGTTACGTCATATGATCAGAGAGGTTGATGTCGATGGTAATGGAACCATAGAATTTGG GGAGTTCTGGAATCTAATGGCAAGGAAAATTAAGGAAAATGATGCTGATGATGAACTGAAAGAGGCCTTCAAAGTATTCGACAAGGATCAAGATGGTTAC ATTTCACCTAATGAGTTGAGGCATGTAATGATTAATTTAGGGGAGCAGGTGACAGATAAAGAGTTAGAGCTGATGATTCAAGTAGCTGACTTGGATGGAG ATGGTCAGGTTAATTATGAGGAATTTATGAGAATGATGCTGGCAATTTGA
AA sequence Show only first row Show all	>Potri.013G040300.2 pacid=42812327 polypeptide=Potri.013G040300.2.p locus=Potri.013G040300 ID=Potri.013G040300.2.v4.1 annot-version=v4.1 MVDVFTEKQIAEFQEAFCLSDKDGDGRITFEELATVIKSLDHGATEEELRHMIREVDVDGNGTIEFGEFWNLMARKIKENDADDELKEAFKVFDKDQDGY ISPNELRHVMINLGEQVTDKELELMIQVADLDGDGQVNYEEFMRMMLAI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G22930		CML11	calmodulin-like 11 (.1)		Potri.013G040300 [exp]	0	1
AT2G46150			Late embryogenesis abundant (L...		Potri.001G098100 [exp]	1.73	0.9966
AT5G14420		RGLG2	RING domain ligase2 (.1.2.3.4)		Potri.016G003000 [exp]	2.23	0.9915
AT4G39830			Cupredoxin superfamily protein...		Potri.005G079400 [exp]	2.44	0.9962	Pt-AO1.3
AT3G02645			Plant protein of unknown funct...		Potri.001G337900 [exp]	3.00	0.9961
AT5G26170	WRKY	ATWRKY50, WRKY5...	ARABIDOPSIS THALIANA WRKY DNA-...		Potri.006G224100 [exp]	4.24	0.9899
AT1G45616		AtRLP6	receptor like protein 6 (.1)		Potri.011G055000 [exp]	5.65	0.9859
AT1G74190		AtRLP15	receptor like protein 15 (.1)		Potri.005G009700 [exp]	7.00	0.9886
AT1G30760			FAD-binding Berberine family p...		Potri.001G462700 [exp]	8.48	0.9831
					Potri.002G247600 [exp]	9.79	0.9662
AT3G47570			Leucine-rich repeat protein ki...		Potri.008G033700 [exp]	12.24	0.9529

Compare expression of checked genes

Potri.013G040300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.