Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38290 470 / 2e-163 AMT2;1, ATAMT2 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) AT3G24290 71 / 1e-12 AMT1;5 ammonium transporter 1;5 (.1) AT3G24300 69 / 3e-12 ATAMT1;3, AMT1;3 ammonium transporter 1;3 (.1) AT1G64780 67 / 8e-12 ATAMT1;2 ammonium transporter 1;2 (.1) AT4G13510 60 / 2e-09 ATAMT1;1, AMT1;1 ARABIDOPSIS THALIANA AMMONIUM TRANSPORT 1, ammonium transporter 1;1 (.1) AT4G28700 59 / 3e-09 AMT1;4 ammonium transporter 1;4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G216000 [exp] 654 / 0 AT2G38290 528 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Potri.002G047000 [exp] 650 / 0 AT2G38290 511 / 1e-179 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Potri.018G033500 [exp] 577 / 0 AT2G38290 525 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Potri.006G247800 [exp] 489 / 2e-171 AT2G38290 462 / 1e-160 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Potri.005G106000 [exp] 484 / 6e-169 AT2G38290 516 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Potri.001G305400 [exp] 472 / 6e-164 AT2G38290 590 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Potri.006G102800 [exp] 468 / 2e-162 AT2G38290 664 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Potri.016G121400 [exp] 464 / 9e-161 AT2G38290 648 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Potri.019G023022 [exp] 453 / 1e-156 AT2G38290 572 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001776 [exp] 663 / 0 AT2G38290 503 / 3e-175 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Lus10024833 [exp] 642 / 0 AT2G38290 558 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Lus10018748 [exp] 641 / 0 AT2G38290 557 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Lus10014713 [exp] 628 / 0 AT2G38290 558 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Lus10003093 [exp] 626 / 0 AT2G38290 558 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Lus10020248 [exp] 603 / 0 AT2G38290 481 / 7e-167 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Lus10009928 [exp] 552 / 0 AT2G38290 539 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Lus10024186 [exp] 551 / 0 AT2G38290 540 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Lus10025692 [exp] 485 / 8e-169 AT2G38290 639 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Lus10028397 [exp] 447 / 1e-154 AT2G38290 481 / 6e-168 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00909 [poplar] [flax] Ammonium_transp Ammonium Transporter Family
Representative CDS sequence Show only first row Show all	>Potri.013G040401.1 pacid=42812272 polypeptide=Potri.013G040401.1.p locus=Potri.013G040401 ID=Potri.013G040401.1.v4.1 annot-version=v4.1 ATGGAGCTGCCCTCTAACTTGTTGCCCGATGAGGCTAGCCCGGTATGGATGAACAAGGGAGACAATGCATGGCAGCTCACAGCAGCTACACTGGTGGGCC TTCAAAGCATACCAGGCCTTGTGATTCTATACGGCAGCATAGTAAAAAGGAAATGGGCCATAAACTCAGCATTCATGGTCTTTTATGCTTTTGCAATGGT ACTTGTTTGTTGGGTAGGGTGGGGTTTCCGCATGTCATTTGGTGAAAAACTTGTGTTTTTCCTAGGAAAACCTGCGGTTGCTTTGGATGAGAAGTTCTTG CTAGGGCAAGCATTTTTAGGCTACTTTCCAACAGCTACAATGGTGTTCTTTCAAGGCGTATTCGCGTGCATCACGTTGATTTTGATCGCTGGTTGTCTAT TAGGAAGGATGAATTTCCGCGCTTGGATCATGTTTGTGCCCTTGTGGCTAACATTTTCTTACACCATCACTGCATTTAGTATATGGTGCCCCGACGGATG GTTGGCTAAACTTGGGGTAATTGATTTTTCAGGAGGGTATGTTATTCATCTCTCCGCCGGTGTTGCCGGCTTCACCGCAGCATATTGGGTGGGTCCAAGA ATAGACAAGGACAGAGAGATGTTCCCACCAAACAATATAATTCTGATGCTTGCAGGGGCAGGCTTGCTTTGGATGGGGTGGAGCGGATTCAACGGTGGAG GTCCCTTTGCTGTCAGTACAATTTCATCTCTAGCAGTCCTTAACACCCATGTGTGCACAGCCACTAGTTTGCTTACATGGCTACTTCTCGACACTTGCTT CTTTGGAAATCCCTCTGTGATTGGCGCTGTACAAGGCATGATCACCGGTCTTGTTTGCATCACTCCTGCTGCAGGAGTTGTGCAATGCTGGGCAGCGATT CTGATGGGAATTGTATCAGGAAGTGTTCCATGGTACACAATGATGGTTCTACACAAGAAGGTGAAGTTCTTAAGACTAGTTGACGATCCCATCGCCATAT TCCACACGCATGCCATTGCCGGAGGTCTAGGAGGCATCCTCACCGGCTTCTTCGCCGTGCCTAAATTATGCCGCCTTTTTTACATGGTGCCCGATTGGGA AAAATACATCGGCTTAGGATATGGACTCCAAAATGGTCAAACTTCTGCCGGACTCCGACAAATGGGAATTCAACTAGGAGGCATTCTTTTTGTTACATTT ATAAACATTTCCACTACTAGCATGATTTGTTGGTTTGTTGGGCTATTTGTTCCACTAAGATTGTCTGATGATGAACTGCAAATCGGTGATGATGCCATAC ATGGAGAGGAAGCTTTTGCACTGTGGAATGATGAGGAGACATTTCAGAATACCAAGACCAACTCAGCTTTTGAATCCGAAGATTCATCCTATATGAAATC AAGGTCTTTCGGTGATGTTCAAATGGTATGA
AA sequence Show only first row Show all	>Potri.013G040401.1 pacid=42812272 polypeptide=Potri.013G040401.1.p locus=Potri.013G040401 ID=Potri.013G040401.1.v4.1 annot-version=v4.1 MELPSNLLPDEASPVWMNKGDNAWQLTAATLVGLQSIPGLVILYGSIVKRKWAINSAFMVFYAFAMVLVCWVGWGFRMSFGEKLVFFLGKPAVALDEKFL LGQAFLGYFPTATMVFFQGVFACITLILIAGCLLGRMNFRAWIMFVPLWLTFSYTITAFSIWCPDGWLAKLGVIDFSGGYVIHLSAGVAGFTAAYWVGPR IDKDREMFPPNNIILMLAGAGLLWMGWSGFNGGGPFAVSTISSLAVLNTHVCTATSLLTWLLLDTCFFGNPSVIGAVQGMITGLVCITPAAGVVQCWAAI LMGIVSGSVPWYTMMVLHKKVKFLRLVDDPIAIFHTHAIAGGLGGILTGFFAVPKLCRLFYMVPDWEKYIGLGYGLQNGQTSAGLRQMGIQLGGILFVTF INISTTSMICWFVGLFVPLRLSDDELQIGDDAIHGEEAFALWNDEETFQNTKTNSAFESEDSSYMKSRSFGDVQMV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Potri.013G040401 [exp]	0	1
AT3G48280		CYP71A25	"cytochrome P450, family 71, s...		Potri.011G131051 [exp]	7.14	0.8444
AT3G54320	AP2_ERF	ATWRI1, ASML1, ...	WRINKLED 1, WRINKLED, ACTIVATO...		Potri.010G092800 [exp]	7.48	0.8172
AT3G60330		AHA7	H\(+\)-ATPase 7, H\(+\)-ATPase...		Potri.014G046300 [exp]	8.94	0.8351	Pt-HA1.5
AT4G00770			unknown protein		Potri.002G152700 [exp]	10.00	0.7715
AT4G00820		IQD17	IQ-domain 17 (.1)		Potri.014G104600 [exp]	16.49	0.7809
AT5G39190		ATGER2, GLP2A	GERMIN-LIKE PROTEIN 2A, A. THA...		Potri.001G464500 [exp]	18.97	0.8445	GER2.25
AT1G45688			unknown protein		Potri.007G045000 [exp]	22.04	0.7725
AT3G05600			alpha/beta-Hydrolases superfam...		Potri.013G013500 [exp]	25.29	0.8389
AT5G17540			HXXXD-type acyl-transferase fa...		Potri.011G153500 [exp]	27.22	0.7614
AT1G17860			Kunitz family trypsin and prot...		Potri.004G067600 [exp]	30.29	0.7402

Compare expression of checked genes

Potri.013G040401 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.