Plant FIBer expression Database

Potri.013G040500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G28830 310 / 4e-105 calcium-binding EF hand family protein (.1)
AT4G38810 59 / 2e-09 Calcium-binding EF-hand family protein (.1.2)
AT2G44310 49 / 5e-07 Calcium-binding EF-hand family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G052900
[exp]
515 / 0 AT5G28830 321 / 2e-109 calcium-binding EF hand family protein (.1)
Potri.009G127800
[exp]
82 / 3e-17 AT4G38810 484 / 7e-172 Calcium-binding EF-hand family protein (.1.2)
Potri.004G166900
[exp]
72 / 6e-14 AT4G38810 520 / 0.0 Calcium-binding EF-hand family protein (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10015916
[exp]
393 / 2e-137 AT5G28830 281 / 6e-94 calcium-binding EF hand family protein (.1)
Lus10009175
[exp]
389 / 6e-136 AT5G28830 281 / 2e-93 calcium-binding EF hand family protein (.1)
Lus10042380
[exp]
71 / 2e-13 AT4G38810 463 / 2e-164 Calcium-binding EF-hand family protein (.1.2)
Lus10026291
[exp]
70 / 3e-13 AT4G38810 481 / 9e-171 Calcium-binding EF-hand family protein (.1.2)
Lus10007567
[exp]
69 / 7e-13 AT4G38810 499 / 6e-178 Calcium-binding EF-hand family protein (.1.2)
Lus10012178
[exp]
67 / 4e-12 AT4G38810 468 / 5e-166 Calcium-binding EF-hand family protein (.1.2)
PFAM info
Representative CDS sequence
>Potri.013G040500.1 pacid=42812745 polypeptide=Potri.013G040500.1.p locus=Potri.013G040500 ID=Potri.013G040500.1.v4.1 annot-version=v4.1
ATGTGCGACGTAGGCATAACGGTACTAGACGGAGACACTCTAAGATCGCTCCATGTGTCCTTACGGGAGGACACCGTCTCTCTTACCGGAGCTCAGGTCC
TCGATTTAGCAGAATCTGAAGCCTCCCGCTCTCTCCTTGGCCTCTCATTGCCTCAACACCTCAAGTCCTCCGCTCTCCGTCGCATGAACATCGACGGCGT
TGACGACGAAGGCGTTGACGATGACGTCGATTTCCGACGTAAAGAACTCAGTCCAGAAGAGGCTTCAAGGAAGCTCAATGAGTATCTCTCCGCCATCGCT
GATGAACTCAAAGATAATCCATTAGTGGCGTCGATTTTGGATGGGAGTGCGTTGCGGATGTTTTTGGAGGATGAAGATGATTTTGCTATGATAGCAGAGA
ATTTATTTACTGATTTGGATACAGAGGATAAAGGGATGATTAGCAAGAGGGAGATAAGAAATGCAGTTGTTAATATGGGAGTCGAAATGGGTGTCCCTCC
TCTTGAAGAATTTCCTTTGATAAATGACATTTTAAAGAAGCATGGAGCAGAGGAGGAAGGAGAATTGGGCCAATCACAATTTGCCGAGTTACTTCAGCCT
ATTCTACAAGAAGTTGCAGATGCTTTGGCTAAAAAGCATTTTGCAGTCATCCATAACATCAAGATAGTTAATGGTTCTGAGCTAAAAAAGGTTTTGGCTA
ACGAGAAGAAATTGAATGATGTAATAGCAAAGATAAAGCAGGAAAGGGACAATGGAAAGAGTGGCCATAAGAGCACAGAGATAATCAAGGATTTCCTGGA
GAAAAATGGAAAAGAACTGGGCTTGCCACCAGCAGAAGCCAATGAAGCAGTGATTCTACTTTATGATGCTGTATTTGCTGACATAGACAGTGGAAAGGGT
GCTTCTGAAGAGGAAGATGAATTTAGGAAACTTGTGACGGAAATTCTTGAGAAATTTGCAGAGCAGCTTGAGGCCAATCCTATCTACTGTGATCTGGACG
GTTGA
AA sequence
>Potri.013G040500.1 pacid=42812745 polypeptide=Potri.013G040500.1.p locus=Potri.013G040500 ID=Potri.013G040500.1.v4.1 annot-version=v4.1
MCDVGITVLDGDTLRSLHVSLREDTVSLTGAQVLDLAESEASRSLLGLSLPQHLKSSALRRMNIDGVDDEGVDDDVDFRRKELSPEEASRKLNEYLSAIA
DELKDNPLVASILDGSALRMFLEDEDDFAMIAENLFTDLDTEDKGMISKREIRNAVVNMGVEMGVPPLEEFPLINDILKKHGAEEEGELGQSQFAELLQP
ILQEVADALAKKHFAVIHNIKIVNGSELKKVLANEKKLNDVIAKIKQERDNGKSGHKSTEIIKDFLEKNGKELGLPPAEANEAVILLYDAVFADIDSGKG
ASEEEDEFRKLVTEILEKFAEQLEANPIYCDLDG

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G28830 calcium-binding EF hand family... Potri.013G040500
[exp]
0 1
AT5G16880 Target of Myb protein 1 (.1.2.... Potri.013G082500
[exp]
2.44 0.7807
AT4G08850 Leucine-rich repeat receptor-l... Potri.002G007925
[exp]
10.19 0.7331
AT2G35910 RING/U-box superfamily protein... Potri.008G018900
[exp]
36.94 0.7279
AT3G46200 ATNUDT9 nudix hydrolase homolog 9 (.1) Potri.009G026700
[exp]
90.09 0.6555
AT3G10640 VPS60.1 SNF7 family protein (.1.2) Potri.008G018300
[exp]
112.24 0.6365
AT3G11320 Nucleotide-sugar transporter f... Potri.010G194100
[exp]
113.24 0.6497
AT3G02360 6-phosphogluconate dehydrogena... Potri.017G106900
[exp]
113.36 0.6451 GND.2
AT5G13420 Aldolase-type TIM barrel famil... Potri.001G068200
[exp]
135.01 0.6628
AT2G46150 Late embryogenesis abundant (L... Potri.003G133400
[exp]
136.25 0.6475
AT1G27000 Protein of unknown function (D... Potri.010G092700
[exp]
150.33 0.6550

Potri.013G040500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.