Plant FIBer expression Database

Potri.013G040800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G12540 231 / 3e-70 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G053300
[exp]
726 / 0 AT4G12540 246 / 5e-76 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10025820
[exp]
364 / 1e-120 AT4G12540 228 / 6e-69 unknown protein
Lus10038281
[exp]
364 / 1e-120 AT4G12540 225 / 1e-67 unknown protein
PFAM info
Representative CDS sequence
>Potri.013G040800.3 pacid=42811467 polypeptide=Potri.013G040800.3.p locus=Potri.013G040800 ID=Potri.013G040800.3.v4.1 annot-version=v4.1
ATGAAGCAGTCTCATCAGGTCTCAATAGCATCAAAATCATCGGAGAGGAAGCCACTGAAAGACTTATCAAATAACAATGGAAGATTCTTGAAATCTGTGA
ACCCCAAGAAAATATCAATGACAGCCAAGGAAATCGGTGATAAACAAAGTGTTGTTAGGGTTCAAGAACAACAACAACAACAACAACAACACCAAGACGA
TGACTGTCTCGATCGCCTCTTGCTTGTCCATTCTGATCTCTCGTCTCTCACTCGCCAGATAGATGAACTTGTTGCGCAAGCATTTAAATTGAAGGCCACA
AGCAAAGAGGGAAGACAAGAAATTGAATCTTTTATGCATGTCTTGTCCAATATGCTTTCTTCTTTAAAGCCATGGGTCCCTAGGTTTCAGAAGGTTCTTT
CCAGTCATTTTGTGGAGCCTGAAAATCAATTACCGCATAAAACTGTTTCTGAAATAAATGAAGATGGAAGCTTTGATGTTGACAGCCCAGAAAAAACCAA
CATGGATTCGCTTATCTCTCCTTCTCCCCTTGTATCCTGGCGAGCTGGCTGCAATGTTGAGAGAGGTAGGCAACTATTTCTGCTAACACCCCTTCCTATG
CCAAAAACACTATCTTCTAGATGTCAAGACTTGCCTAAATCAGTATTTGAAAAGATTTCCTTAAATCCTGCTGTTGAGCCACCATCAACTTCTACTATTT
TTGGAGATGGAAATGAAGATTTGCATGAAGACATGGCAACAAAACCGATCACAAGTAAGCCTTCTGATCCCGTTGCAACTGAAGGAAAACTTGAGTGTCT
TTCTTCCCCGATGTTTTCAAAACAAAACCACTTTGTTGCTATGACCCCATGCTTAAACATGTCTCCTCCAAAATCTTGTGTGTTGCTCGAAGCCATCTCT
CAGTCCTCTCATAAAGGCAATTATAGGTTGCGGAAGTCCACGCCATTTCCTGTTGGTATTCATTCACACATTTCTGAATCCTCCGGCAGTGAAGGTTCTG
AGGATCTGACTTTGAAGTACCCAGAGCTCTTAGGGATACAACGAGCTTATAAATCTAGAATGGGAATTAAAGATCTAGAGTCATCTCCAAACTGGTCCTT
TTCACCTCCTAAAACTTGTATTGTTTTGGAGCCACCTGTTGAGAAATCATTGGACATCCATGTTGCTGATCACCACTTGAAAGTCCATGCTCCTGTTTTG
AATCAGCAAACGTATTCTACTCTTTCAAAAGAATGTGATTTTCAAGGAGGTTGTCATCAAATCAAGAAACCTTGCAATGGAGGACCTGTATGTGGCGTCT
CAAAGCTAATAATAGAAAGCACTCCTTTATGGAAGGAGCCTGAAAGCACAATAAGGACAGGGAAGCGTCCTGGTGAGAATACGCTGAAGAAGGAACTTTG
GACAAAATTTGAAGCAGCATCTACATATGGGTTCCGTTTGGATGCTTCTGCATTCCAAGGGACTGCACAAAAAGGATTTCTTGACATGCTTGATGAAGCT
TCCTGTGACGAGGGTAAGTCTAACTGCTGA
AA sequence
>Potri.013G040800.3 pacid=42811467 polypeptide=Potri.013G040800.3.p locus=Potri.013G040800 ID=Potri.013G040800.3.v4.1 annot-version=v4.1
MKQSHQVSIASKSSERKPLKDLSNNNGRFLKSVNPKKISMTAKEIGDKQSVVRVQEQQQQQQQHQDDDCLDRLLLVHSDLSSLTRQIDELVAQAFKLKAT
SKEGRQEIESFMHVLSNMLSSLKPWVPRFQKVLSSHFVEPENQLPHKTVSEINEDGSFDVDSPEKTNMDSLISPSPLVSWRAGCNVERGRQLFLLTPLPM
PKTLSSRCQDLPKSVFEKISLNPAVEPPSTSTIFGDGNEDLHEDMATKPITSKPSDPVATEGKLECLSSPMFSKQNHFVAMTPCLNMSPPKSCVLLEAIS
QSSHKGNYRLRKSTPFPVGIHSHISESSGSEGSEDLTLKYPELLGIQRAYKSRMGIKDLESSPNWSFSPPKTCIVLEPPVEKSLDIHVADHHLKVHAPVL
NQQTYSTLSKECDFQGGCHQIKKPCNGGPVCGVSKLIIESTPLWKEPESTIRTGKRPGENTLKKELWTKFEAASTYGFRLDASAFQGTAQKGFLDMLDEA
SCDEGKSNC

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G12540 unknown protein Potri.013G040800
[exp]
0 1
AT4G12540 unknown protein Potri.005G053300
[exp]
1.00 0.9557
AT3G26400 EIF4B1 eukaryotic translation initiat... Potri.014G123100
[exp]
1.73 0.9443
AT5G45700 Haloacid dehalogenase-like hyd... Potri.011G072000
[exp]
2.44 0.9444
AT1G06920 OFP ATOFP4, OFP4 ARABIDOPSIS THALIANA OVATE FAM... Potri.019G128500
[exp]
3.16 0.9007
AT3G26400 EIF4B1 eukaryotic translation initiat... Potri.002G198700
[exp]
3.46 0.9395
AT1G68350 unknown protein Potri.008G122700
[exp]
3.87 0.9296
AT5G42700 B3 AP2/B3-like transcriptional fa... Potri.014G031600
[exp]
4.24 0.9243
AT2G36200 P-loop containing nucleoside t... Potri.006G210700
[exp]
4.89 0.9031
AT3G19210 ATRAD54, CHR25 homolog of RAD54 (.1.2) Potri.004G141500
[exp]
7.74 0.8760
AT5G65160 TPR14 tetratricopeptide repeat 14, t... Potri.005G076800
[exp]
7.87 0.8595

Potri.013G040800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.