Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04750 234 / 4e-73 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G14470 132 / 1e-35 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G22410 129 / 2e-34 SLO1 SLOW GROWTH 1 (.1) AT3G22690 126 / 3e-33 unknown protein AT3G15930 125 / 4e-33 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G29760 125 / 4e-33 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G21090 125 / 6e-33 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G08070 122 / 5e-32 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G16860 121 / 1e-31 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G28640 117 / 1e-30 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G053600 [exp] 379 / 1e-129 AT3G04750 759 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G019500 [exp] 144 / 1e-39 AT2G22410 791 / 0.0 SLOW GROWTH 1 (.1) Potri.006G245300 [exp] 135 / 2e-36 AT3G22690 570 / 0.0 unknown protein Potri.009G044700 [exp] 134 / 3e-36 AT2G29760 1013 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G088600 [exp] 131 / 3e-35 AT1G31430 690 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.004G217900 [exp] 129 / 3e-34 AT2G22410 530 / 0.0 SLOW GROWTH 1 (.1) Potri.010G083700 [exp] 126 / 3e-33 AT3G22690 1050 / 0.0 unknown protein Potri.012G108000 [exp] 125 / 6e-33 AT2G34400 640 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.010G086200 [exp] 125 / 7e-33 AT4G14820 840 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020918 [exp] 139 / 7e-38 AT2G29760 474 / 3e-159 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018223 [exp] 133 / 9e-36 AT2G29760 931 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10004052 [exp] 131 / 3e-35 AT1G31430 684 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10040680 [exp] 131 / 6e-35 AT2G29760 926 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10002288 [exp] 130 / 7e-35 AT1G31430 689 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10010320 [exp] 121 / 1e-31 AT2G34400 658 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10022368 [exp] 119 / 1e-30 AT2G13600 414 / 2e-129 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10029888 [exp] 118 / 1e-30 AT5G16860 353 / 2e-111 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015718 [exp] 118 / 1e-30 AT5G66520 357 / 6e-116 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013341 [exp] 117 / 2e-30 AT1G05750 525 / 0.0 pigment defective 247, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.013G041100.1 pacid=42811131 polypeptide=Potri.013G041100.1.p locus=Potri.013G041100 ID=Potri.013G041100.1.v4.1 annot-version=v4.1 ATGAAGCAAGTGTACTTGGAGAATGGACTGATGAGGCTTGCACATCAGGTATTTGAAGAGATGCCCAGTCCAGATGTTGTTTCTTTTAAGATTACAATCG TTGGTTATGCTAAGAAAGGGTTTGGTTTGGAAGCAATGCGATTGTTTCATGAAATGGTGGGTTTAGGCCTTGAACCTGATGAGTTTACTATGTTGGGTTT GCTTGTTTTTTGTGGGCAATTAGGAGATGTGAAGTTTGGTAGGGCTGTTCATGGGTGGATGGAAAGGAGGATGTCTACTATGTCGTCGGATTTGATCCTG GGTTATGCTCTTATGGATATTTATGTCAAGTGCCAGGAGTTGGAGCTTGCTTCGAGAACATTTGGTGCATTAAAGAAGAAGGATGTTGTTTCCTGGAACA TGATAATTGCAGGGTGTGCTGAGGTGGGGGAGTTGGAGCAGGCGTGGATGTTTTTTGATCAAATGCCTTGTAGGGATATTGTGTCTTGGAACTCTTTGAT TACTGGATATGCCTGCAGGGGTGGTTTTTCAATGGTAAAGGGTTTAATCATAGACTTGGTGATGGAGAGTGTTATACCCGACACTGTCTCCATGATTAGC TTAGTCTCTGCCGCAGCAGAAACGGGAGCTCTGGATCAAGGGAGGTGGGCACGCGGGTGA
AA sequence Show only first row Show all	>Potri.013G041100.1 pacid=42811131 polypeptide=Potri.013G041100.1.p locus=Potri.013G041100 ID=Potri.013G041100.1.v4.1 annot-version=v4.1 MKQVYLENGLMRLAHQVFEEMPSPDVVSFKITIVGYAKKGFGLEAMRLFHEMVGLGLEPDEFTMLGLLVFCGQLGDVKFGRAVHGWMERRMSTMSSDLIL GYALMDIYVKCQELELASRTFGALKKKDVVSWNMIIAGCAEVGELEQAWMFFDQMPCRDIVSWNSLITGYACRGGFSMVKGLIIDLVMESVIPDTVSMIS LVSAAAETGALDQGRWARG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G04750			Tetratricopeptide repeat (TPR)...		Potri.013G041100 [exp]	0	1
AT3G09040			Pentatricopeptide repeat (PPR)...		Potri.005G137900 [exp]	4.89	0.8539
AT2G30280		RDM4, DMS4	DEFECTIVE IN MERISTEM SILENCIN...		Potri.019G126500 [exp]	13.11	0.8040
AT1G04570			Major facilitator superfamily ...		Potri.010G063800 [exp]	17.32	0.7898
AT3G14200			Chaperone DnaJ-domain superfam...		Potri.003G070600 [exp]	23.47	0.7423
AT4G21705			Tetratricopeptide repeat (TPR)...		Potri.011G120900 [exp]	23.66	0.7832
AT4G18520			Pentatricopeptide repeat (PPR)...		Potri.002G091101 [exp]	25.69	0.7983
AT2G43770			Transducin/WD40 repeat-like su...		Potri.019G096900 [exp]	26.53	0.7802
AT3G48150		CDC23, APC8	anaphase-promoting complex sub...		Potri.010G248550 [exp]	28.14	0.7499
AT5G56780		ATET2	ARABIDOPSIS EFFECTOR OF TRANSC...		Potri.006G150000 [exp]	32.09	0.7750
AT1G17100			SOUL heme-binding family prote...		Potri.015G080000 [exp]	35.00	0.7482

Compare expression of checked genes

Potri.013G041100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.