Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04740 1281 / 0 MED14, SWP, ATMED14 STRUWWELPETER, ARABIDOPSIS MEDIATOR COMPONENTS 14, RNA polymerase II transcription mediators (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G053700 [exp] 2915 / 0 AT3G04740 1287 / 0.0 STRUWWELPETER, ARABIDOPSIS MEDIATOR COMPONENTS 14, RNA polymerase II transcription mediators (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015908 [exp] 2455 / 0 AT3G04740 2142 / 0.0 STRUWWELPETER, ARABIDOPSIS MEDIATOR COMPONENTS 14, RNA polymerase II transcription mediators (.1) Lus10006586 [exp] 2453 / 0 AT3G04740 2113 / 0.0 STRUWWELPETER, ARABIDOPSIS MEDIATOR COMPONENTS 14, RNA polymerase II transcription mediators (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08638 [poplar] [flax] Med14 Mediator complex subunit MED14
Representative CDS sequence Show only first row Show all	>Potri.013G041201.2 pacid=42811545 polypeptide=Potri.013G041201.2.p locus=Potri.013G041201 ID=Potri.013G041201.2.v4.1 annot-version=v4.1 ATGGCTGAGTTAGGGCAACAAACTGTGGAATTCTCGACTCTCGTGAGTCGAGCTGCTGAGGATTCGTTTCTTTCTCTGAAAGAATTGGTGGACAAATCCA AATCCACCCAACAATCTGATTCTGACAAGAAGATTAGTCTTTTGAAGTACTTGGTTCACACTCAACAGCGTATGCTTAGACTCAATGTCCTTGCTAAATG GTGCCAACAGGTTCCGTTGATACAATATTGTCAGCAACTTCAGTCAACCTTGTCAAGTCATGATACTTGTTTTATCCAAACCGCAGATTCTTTATTTTTC ATGCACGAGGGGCTACAGCAGGCTCGTGCTCCTAGCTATGATGTTCCATCTGCTATAGAAGTACTCCTAACTGGATCTTATGAGCGTTTACCAAAATGTA TAGAAGATGTGGGTATCCAGGGAAAATTAACTGAGGTTCAGCAGAAGCCAGCTTTGAGAAAGTTGGACACACTTGTGCAATCTAAGTTACTTGAAGTTTC ATTACCAAAGGAAATTTCCAAGGTGAAAGTGTCTGATGGTACTGCATTGCTTCGTGTGGATGGAGAATTTAAAGTTTTAGTTACTCTTGGCTACCGAGGG CACCTTTCAATGTGGAGGATACTACATATGGAATTGCTTGTTGGTGAGAGAAGTGGATCTGTGAAATTGGAAGAATTGCGACGGCATGTTCTGGGAGATG ATTTGGAGCGCAGAATGGCTGCAGCAGAGAATCCATTTACGATTCTATATTCAGTTCTTCATGAGCTTTGTGTTGCATTAGTTATGGATACTGTTCTAAG GCAAGTACAAGCACTCCGTCAAGGAAGATGGAAAGATGTAATTCGGTTTGAGCTCGTATCTGATAGCAGTAGTAGTAATGCCACTCAGCTAAATCAAGAT GGAGAAGTTGATTCAGCTGGTTTACGAACACCAGGTTTGAAAATTATATATTGGTTAGATTTGGATAAAAACTCTGGCACATCCGACTCGGGGATTTGCC CATTTATAAAAATTGAACCAGGACCCGATCTACAGATAAAATGTATTCATAGCACTTTTGTTATAGATCCTCTAAATGGAAGGGGGGCGGAATTCTCCCT TGACCAGAGCTGCATCGATGTTGAGAAGTTGCTTCTCAGAGCAATATGTTGTAATAGATATACTCGTTTGCTTGAAATTCAGAAAGAGCTGGGAAAAAAT GTTCAGATCTGCCGTGCTGCAGGTGATGTTTTTCTTCAGTTCCACATGGATGAACCTGATGCTGACCATAAAAAGAAAGAAACTAAGTCTGATGGTGGGG ATCAAGAGGGGCAGGAAGTACTGCATGTTCGTGCCTATGGATCATCGTTTTTTACCCTTGGAATAAATATAAGGAATGGCCGTTTTCTCCTCCGATCATC CCAAAATATAATTACACCTTCAGTGCTGATAGATTTTGAAGAAGCTTTAAATCAAGGAAGCATAACTGCAGCTGAAGTTTTCATTAGTTTGAGGAGCAAA AGTATCTTGCACTTATTTGCATCTATTGGCAGGTTCTTAGGTCTCGAGGTATATGAACATGGTTTTGCTGCAGTGAAAGTACCTAAAAACCTTTTGAATG GTTCAACTATGCTGCTAATGGGGTTCCCAGACTGTGGGAATTTGTATTTTCTGTTGGCACAACTTGATAAGGATTTCAAACCTCTGTTTAAGTTGCTGGA GACACAACCAGATCCATCTGGAAAAGTTCATTCTTCTAGTGACTCAACTGCTGTAATGCGCATGAAGAAGATCGACGTTAACCAGATGCAGATGCTTGAA GATGATCTGAGTATCGTTGACCTGGGAAAATTGAATCGCCTTTTGCCTAATGCCTCTCCTTATAACCAGATGTCCGAACATGGTCTTCTATCTGAATTCC GTCTAGATGGTCCCATGCCAATTGCAGGATGTCCTCCATCAAGTTTTTCATCCGTTGTTGATGAAGTATTTGAACTTGAGAAAGGGGCATCTGCACCTTC ATTCCCACTTCAGAATGTTACCTCATTCAATGCATCTCCTGCTTCTCATTTTGGCTCTGTTCCGACGAATCTTCATACTATTAAAGCTGGAACTCCTCCT AAGTGGGAAGCAGGCATGCAGGGGTCACAAGTTAACAGTGTTGCAAAAGTGTCAAGTGTGGCCTCTCACTATAACGGATCCTTGTGTCCATCAAATAACC TGAAGGGACCTGTGCATTCCAGTTCATTCAGTTCACTATCTTCTGGTCTAGGAAGGACCACAGCTGTGAAAATATTATCAGCTTCAAAATCTGATCAGGA TTTGTCTTCTCTTAGATCTCAACATCTGGTTGAGGTTGGCACTAATTCCGCAATGGACGATGATCATCTAAGACTGCTGAATGATGCATCAAAGGATGCT CTATCTGGGATTAGGCCCTCTCGATTGTCATCTCCATCTCGACCAACAGGCTCTCGAATTTCAGCATCAAATGTGAAACCTATTGGAGCCAGAAGCTCGC CAGCTGGGTCTGTGGTCAGAGTTGCTGGATCAAGCCCATTAGCTACAACTTCCGTATCCCATACAGCAGGAGATACTGCAATATCTCTGGGCTCTAGTCA TGATGTATCCATACATGAAAAAAATCCAAGAAAGCGTACAGTTTTAGACATGTTGAGCATGATTCCATCTCTCCAAGATATAGATGCTAAAGCAGGATTT TCTAAGAGAAGAAGAACCTCAGAATCAGCTCACTTTCAGAAGGTTTCTTCACAGATGCTTGTATCATCAGAAATGGTCTATAAAAATGAGAGATACAGCT ATGGGAACCTTATTGCGGAAGCAAATAAAGGGAATTCACCTTCAAACATTTACGTCTCTGCTCTTCTTCACATGGTTAGACATTGCTCACTTTCCATTAA GCATGCTAGACTAACTAGCCAGATGGACGACATGGACATTCCATATGTTGAAGAAGTGGGTCTAAGAAGTGCATCCTCAAATATATGGTTCCGACTTCCA CTAGCGCGAGGCGATTCATGGCAACATATTTGCTTGCGGCTTGGTAGACCTGGAAGCATGCATTGGGATGTCAAAATAAATGATCAGCACTTCAGGGATT TGTGGGAACTTCAGAAGGGAAGCAGTGGCACTCCCTGGGGTTCTGGGGTCCATATTGCGAATGCATCTGATGTGGATTCCCATATTCGTTACGATCCAGA TGGCGTTGTCCTGAGTTATCAGTCTGTTGAGTCTGATAGTATAAAGAAGCTAGTGGCAGATATTCAAAGGCTTTCTAATGCTAGAATGTTTGCTCTTGGA ATGCGTAAGCTGCTTGGAGTAAGAGCAGATGAGAAACTAGAGGAAAGCAGTGCAAACTCTGATCTTAAAGTGCCCATTGGAGGAAAAAATGCTCCTGAGG GAGCTGATAAGTTGTTTGAACAGATGAGGAGGGCATTTAGAATTGAGGCAGTTGGACTGATGAGTTTGTGGTTTAGCTTTGGTTCAGGTGTTCTAGCTCG TTTTGTTGTTGAGTGGGAATCGGGTAAAGAAGGGTGCACATTGCATGTTTTACCAGACCAACTTTGGCCTCATACTAAGTTCCTGGAAGATTTTATAAAT GGGGCTGAAGTTGCATCCCTGTTGGATTGCATTCGCCTAACTGCTGGACCCCTGCATGCTCTTGCTGCTGCTACTCGCCCTGCAAGAGCTGGTCCTGCTC CAGCTGTTCCAGGTGCAACCGCAACTCTTGCTTCTATGCCAAAACAGGCAGGGTACATCCAATCCCAGGGACTCTTGCCCAGCAGTTTGGTGAATCATAT TAGCCAGCCAACTTCTGGCCCTGTAAGCAATGTTTCTTCTAGTACTGGACCTCTTGGGAATCACAACCCACATAATGTTGCAATGTTAGCTGCTACTGGT CGAGGTGGCCCTGGCATTGTTCCCAGCTCACTGTTGCCAATTGATGTCTCTGTTGTACTACGAGGCCCCTACTGGATCCGGATTATATACCGGAAGCATT TTGCAGTTGATATGCGTTGCTTTGCTGGAGATCAGGTTTGGTTGCAACCAGCAACACCACCTAAGGGGGGTCCTTCAGTTGGAGGATCATTACCCTGTCC ACAGTTTCGCCCTTTCATCATGGAGCATGTTGCCCAAGAACTGAATGGATTAGATCCTGGCTTTGCTGGTGGTCAGCAGACAGTTGGACTGGGAAATTCT AACAATCCTAACCCAAGTTCATGTTCTCAACTATCAAGTGTTAATGGAAATAGAGTTAACCTTCCTAATTCTTCAGCAACATCCAGGGCAGCAAATCAAG TGGCTGCATTGAATCGTGTTGGAAATGCTGTTCCGGGATCATCAAATTTGGCTGTCCTAAGCTCAGGATTGCCCATACGCAGATCCCCAGGTGTTGGTGT CCCTGCTCATGTTAGAGGAGAGCTGAATACAGCCATTATCGGTCTTGGTGATGATGGAGGGTATGGAGGTGGATGGGTTCCTCTTGTTGCTCTTAAGAAG GTTCTAAGAGGCATTCTTAAATACCTTGGAGTGCTGTGGCTTTTTGCTCAATTACCAGGCCTTTTGAAAGAGATCCTAGGGTCAATTTTGAAGGAAAATG AAGGTGCGCTCTTGAATTTGGACCAGGAACAGCCAGCCTTGCGCTTCTTTGTGGGGGGCTATGTGTTTGCTGTAAGTGTCCACAGAGTTCAACTTCTTCT TCAAGTACTTAGCGTCAAGCGCTTTCATCATCAACAGCAGCAACAACAGCAACAAAATAATGCAGCTGCTCAAGAAGAACTGACTCAATCTGAAATTGGA GAAATATGCGACTATTTCAGTCGCCGGGTAGCATCAGAGCCCTATGATGCTTCTCGTGTCGCATCATTCATTACCTTTCTCACTCTACCCATATCAGTTT TAAAAGAATTTTTAAAATTAATTGCATGGAAGAAAGGATTGGCTCAGGCACAAGGTGGGGAGATGGCACCTGGACAAAAACCCCGAATTGAATTATGCCT TGAAAATCATACGGGGTTAAATGTGGCTGAGAATTCATCTGCTGCAAAAAGCAATATCCATTATGATCGGCCCCATAATTCTGTTGATTTTGCACTGACT GTTGTCCTTGATTCTGCTCACATACCTCACATTAATGCTGCGGGTGGTGCTGCCTGGTTACCCTACTGTGTCTCAGTGAGGTTGAGATACTTGTTTGGTG AAACCATGAATGTGTCTTTCCTTGGCATGGAAGGAAGCCACGGCGGCCGAGCTTGCTGGTCACATGTTGATGACTGGGAGAAAAGTAAACAGAGGGTGGC TCGAACTGTGGAAGTGCATGGATCTTCGACAGGAGATGCCCAAGGAAGGTTGAGAGTAGTTGCAGAAAGTGTGCAAAAAAACCTGCATATGTGCCTCCAA GGGTTGAGAGATGGCAGTGGAGTTACTGCAAGCTCTGGGACAACGTGA
AA sequence Show only first row Show all	>Potri.013G041201.2 pacid=42811545 polypeptide=Potri.013G041201.2.p locus=Potri.013G041201 ID=Potri.013G041201.2.v4.1 annot-version=v4.1 MAELGQQTVEFSTLVSRAAEDSFLSLKELVDKSKSTQQSDSDKKISLLKYLVHTQQRMLRLNVLAKWCQQVPLIQYCQQLQSTLSSHDTCFIQTADSLFF MHEGLQQARAPSYDVPSAIEVLLTGSYERLPKCIEDVGIQGKLTEVQQKPALRKLDTLVQSKLLEVSLPKEISKVKVSDGTALLRVDGEFKVLVTLGYRG HLSMWRILHMELLVGERSGSVKLEELRRHVLGDDLERRMAAAENPFTILYSVLHELCVALVMDTVLRQVQALRQGRWKDVIRFELVSDSSSSNATQLNQD GEVDSAGLRTPGLKIIYWLDLDKNSGTSDSGICPFIKIEPGPDLQIKCIHSTFVIDPLNGRGAEFSLDQSCIDVEKLLLRAICCNRYTRLLEIQKELGKN VQICRAAGDVFLQFHMDEPDADHKKKETKSDGGDQEGQEVLHVRAYGSSFFTLGINIRNGRFLLRSSQNIITPSVLIDFEEALNQGSITAAEVFISLRSK SILHLFASIGRFLGLEVYEHGFAAVKVPKNLLNGSTMLLMGFPDCGNLYFLLAQLDKDFKPLFKLLETQPDPSGKVHSSSDSTAVMRMKKIDVNQMQMLE DDLSIVDLGKLNRLLPNASPYNQMSEHGLLSEFRLDGPMPIAGCPPSSFSSVVDEVFELEKGASAPSFPLQNVTSFNASPASHFGSVPTNLHTIKAGTPP KWEAGMQGSQVNSVAKVSSVASHYNGSLCPSNNLKGPVHSSSFSSLSSGLGRTTAVKILSASKSDQDLSSLRSQHLVEVGTNSAMDDDHLRLLNDASKDA LSGIRPSRLSSPSRPTGSRISASNVKPIGARSSPAGSVVRVAGSSPLATTSVSHTAGDTAISLGSSHDVSIHEKNPRKRTVLDMLSMIPSLQDIDAKAGF SKRRRTSESAHFQKVSSQMLVSSEMVYKNERYSYGNLIAEANKGNSPSNIYVSALLHMVRHCSLSIKHARLTSQMDDMDIPYVEEVGLRSASSNIWFRLP LARGDSWQHICLRLGRPGSMHWDVKINDQHFRDLWELQKGSSGTPWGSGVHIANASDVDSHIRYDPDGVVLSYQSVESDSIKKLVADIQRLSNARMFALG MRKLLGVRADEKLEESSANSDLKVPIGGKNAPEGADKLFEQMRRAFRIEAVGLMSLWFSFGSGVLARFVVEWESGKEGCTLHVLPDQLWPHTKFLEDFIN GAEVASLLDCIRLTAGPLHALAAATRPARAGPAPAVPGATATLASMPKQAGYIQSQGLLPSSLVNHISQPTSGPVSNVSSSTGPLGNHNPHNVAMLAATG RGGPGIVPSSLLPIDVSVVLRGPYWIRIIYRKHFAVDMRCFAGDQVWLQPATPPKGGPSVGGSLPCPQFRPFIMEHVAQELNGLDPGFAGGQQTVGLGNS NNPNPSSCSQLSSVNGNRVNLPNSSATSRAANQVAALNRVGNAVPGSSNLAVLSSGLPIRRSPGVGVPAHVRGELNTAIIGLGDDGGYGGGWVPLVALKK VLRGILKYLGVLWLFAQLPGLLKEILGSILKENEGALLNLDQEQPALRFFVGGYVFAVSVHRVQLLLQVLSVKRFHHQQQQQQQQNNAAAQEELTQSEIG EICDYFSRRVASEPYDASRVASFITFLTLPISVLKEFLKLIAWKKGLAQAQGGEMAPGQKPRIELCLENHTGLNVAENSSAAKSNIHYDRPHNSVDFALT VVLDSAHIPHINAAGGAAWLPYCVSVRLRYLFGETMNVSFLGMEGSHGGRACWSHVDDWEKSKQRVARTVEVHGSSTGDAQGRLRVVAESVQKNLHMCLQ GLRDGSGVTASSGTT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G04740		MED14, SWP, ATM...	STRUWWELPETER, ARABIDOPSIS MED...		Potri.013G041201 [exp]	0	1
AT5G28530	FAR1_related	FRS10	FAR1-related sequence 10 (.1)		Potri.016G007300 [exp]	2.23	0.8493
AT2G19260			RING/FYVE/PHD zinc finger supe...		Potri.018G142300 [exp]	5.19	0.7932
AT1G67580		CDKG;2	Protein kinase superfamily pro...		Potri.010G056900 [exp]	6.00	0.8527
					Potri.013G071800 [exp]	6.48	0.8502
AT5G54260		MRE11, ATMRE11	ARABIDOPSIS MEIOTIC RECOMBINAT...		Potri.001G407300 [exp]	6.92	0.8189	Pt-MRE11.1
AT4G04920		AtSFR6, SFR6	sensitive to freezing 6 (.1.2)		Potri.004G040300 [exp]	8.12	0.8475
AT5G55600			agenet domain-containing prote...		Potri.001G365800 [exp]	9.38	0.8501
AT5G07980			dentin sialophosphoprotein-rel...		Potri.015G056200 [exp]	9.89	0.8422
AT2G40770			zinc ion binding;DNA binding;h...		Potri.019G060900 [exp]	13.11	0.8511
AT4G20310			Peptidase M50 family protein (...		Potri.003G157800 [exp]	13.41	0.8040

Compare expression of checked genes

Potri.013G041201 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.