Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-PRP4.3
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04720 247 / 8e-84 HEL, PR-4, PR4 HEVEIN-LIKE, pathogenesis-related 4 (.1) AT2G43610 50 / 2e-07 Chitinase family protein (.1) AT3G12500 49 / 4e-07 PR-3, PR3, CHI-B, B-CHI, ATHCHIB PATHOGENESIS-RELATED 3, basic chitinase (.1) AT2G43620 47 / 1e-06 Chitinase family protein (.1) AT2G43570 45 / 9e-06 CHI "chitinase, putative", chitinase, putative (.1) AT3G54420 42 / 0.0001 ATCHITIV, CHIV, ATEP3 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) AT2G43590 41 / 0.0003 Chitinase family protein (.1) AT2G43580 39 / 0.0008 Chitinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G041900 [exp] 345 / 7e-123 AT3G04720 251 / 1e-85 HEVEIN-LIKE, pathogenesis-related 4 (.1) Potri.005G054000 [exp] 300 / 2e-105 AT3G04720 238 / 9e-81 HEVEIN-LIKE, pathogenesis-related 4 (.1) Potri.013G041600 [exp] 282 / 5e-98 AT3G04720 266 / 3e-91 HEVEIN-LIKE, pathogenesis-related 4 (.1) Potri.009G142000 [exp] 53 / 2e-08 AT3G12500 346 / 6e-119 PATHOGENESIS-RELATED 3, basic chitinase (.1) Potri.009G142300 [exp] 52 / 3e-08 AT3G12500 340 / 1e-116 PATHOGENESIS-RELATED 3, basic chitinase (.1) Potri.004G182000 [exp] 50 / 3e-07 AT3G12500 460 / 5e-164 PATHOGENESIS-RELATED 3, basic chitinase (.1) Potri.009G141700 [exp] 49 / 7e-07 AT3G12500 405 / 3e-142 PATHOGENESIS-RELATED 3, basic chitinase (.1) Potri.019G094100 [exp] 43 / 5e-05 AT3G54420 350 / 3e-122 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Potri.019G094000 [exp] 43 / 6e-05 AT3G54420 340 / 2e-118 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006552 [exp] 293 / 2e-102 AT3G04720 244 / 1e-82 HEVEIN-LIKE, pathogenesis-related 4 (.1) Lus10003265 [exp] 213 / 6e-71 AT3G04720 202 / 8e-67 HEVEIN-LIKE, pathogenesis-related 4 (.1) Lus10006557 [exp] 196 / 2e-64 AT3G04720 191 / 2e-62 HEVEIN-LIKE, pathogenesis-related 4 (.1) Lus10006556 [exp] 183 / 1e-59 AT3G04720 186 / 1e-60 HEVEIN-LIKE, pathogenesis-related 4 (.1) Lus10003264 [exp] 181 / 1e-58 AT3G04720 181 / 1e-58 HEVEIN-LIKE, pathogenesis-related 4 (.1) Lus10003262 [exp] 167 / 2e-53 AT3G04720 154 / 2e-48 HEVEIN-LIKE, pathogenesis-related 4 (.1) Lus10020252 [exp] 142 / 8e-43 AT3G04720 135 / 4e-40 HEVEIN-LIKE, pathogenesis-related 4 (.1) Lus10001774 [exp] 139 / 6e-42 AT3G04720 125 / 2e-36 HEVEIN-LIKE, pathogenesis-related 4 (.1) Lus10003588 [exp] 125 / 2e-36 AT3G04720 128 / 1e-37 HEVEIN-LIKE, pathogenesis-related 4 (.1) Lus10003266 [exp] 105 / 2e-29 AT3G04720 89 / 2e-23 HEVEIN-LIKE, pathogenesis-related 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00187 [poplar] [flax] Chitin_bind_1 Chitin recognition protein CL0199 [poplar] [flax] DPBB PF00967 [poplar] [flax] Barwin Barwin family
Representative CDS sequence Show only first row Show all	>Potri.013G041700.1 pacid=42811529 polypeptide=Potri.013G041700.1.p locus=Potri.013G041700 ID=Potri.013G041700.1.v4.1 annot-version=v4.1 ATGAAGAGGTTGAGCTTATTCATGGTATTCCTCCTATGCCTAGCAGCGACTGCAATTGCCCAAAATTGTGGCCGGCAGGCTGGAGGCCAAACCTGCGCTA ACAATCTTTGTTGTAGCCAATGGGGTTATTGCGGGACAAGTGACGATCATTGTAATCCTTCCAAGAATTGTCAAAGCAACTGTAGGTCTAGTGGTAGTGG TGGCGGTACTGGTGGCGGTGGTGAAAGTGCTTCAAATGTTAGAGCCACATATCATTATTACAATCCTGACCAAAATGGATGGGACTTGAATGCTGTGAGT GCTTATTGTTCTACATGGGATGCCAATAAGCCTTTGGCATGGCGTCGGAAATACGGCTGGACTGCCTTTTGTGGACCGGTTGGACCCCGTGGACAGGCTT CCTGTGGCAAGTGCTTGAGGGTGACCAATACTGGAACCGGAGCTCAAGTAACTGTGAGGATTGTCGACCAGTGCAGCAATGGAGGTCTAGACTTGGATGC TGGGGTGTTTCGACAAATAGATACTGATGGAAGAGGCAATGCTCAAGGCCACCTTATTGTGAACTACCAGTTTGTCAACTGCGGGGACTGA
AA sequence Show only first row Show all	>Potri.013G041700.1 pacid=42811529 polypeptide=Potri.013G041700.1.p locus=Potri.013G041700 ID=Potri.013G041700.1.v4.1 annot-version=v4.1 MKRLSLFMVFLLCLAATAIAQNCGRQAGGQTCANNLCCSQWGYCGTSDDHCNPSKNCQSNCRSSGSGGGTGGGGESASNVRATYHYYNPDQNGWDLNAVS AYCSTWDANKPLAWRRKYGWTAFCGPVGPRGQASCGKCLRVTNTGTGAQVTVRIVDQCSNGGLDLDAGVFRQIDTDGRGNAQGHLIVNYQFVNCGD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G04720		HEL, PR-4, PR4	HEVEIN-LIKE, pathogenesis-rela...		Potri.013G041700 [exp]	0	1	Pt-PRP4.3
AT4G38840			SAUR-like auxin-responsive pro...		Potri.009G126700 [exp]	2.00	0.9946
AT4G38770		ATPRP4, PRP4	ARABIDOPSIS THALIANA PROLINE-R...		Potri.004G168600 [exp]	2.23	0.9970
AT4G24275			unknown protein		Potri.004G224600 [exp]	3.16	0.9933
AT4G33790		G7, FAR3, CER4	FATTY ACID REDUCTASE 3, ECERIF...		Potri.009G144900 [exp]	5.65	0.9958
AT5G01740			Nuclear transport factor 2 (NT...		Potri.016G129600 [exp]	8.18	0.9819
AT4G02340			alpha/beta-Hydrolases superfam...		Potri.005G081000 [exp]	9.48	0.9893
					Potri.006G028601 [exp]	9.53	0.9937
AT3G16370			GDSL-like Lipase/Acylhydrolase...		Potri.001G191400 [exp]	11.18	0.9941
AT5G07010		ATST2A	ARABIDOPSIS THALIANA SULFOTRAN...		Potri.003G193250 [exp]	11.61	0.9865
AT2G26640		KCS11	3-ketoacyl-CoA synthase 11 (.1...		Potri.010G079400 [exp]	11.74	0.9908

Compare expression of checked genes

Potri.013G041700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.