Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30580 362 / 3e-122 BMI1A, DRIP2 DREB2A-interacting protein 2 (.1) AT1G06770 327 / 3e-108 DRIP1 DREB2A-interacting protein 1 (.1.2) AT3G23060 105 / 2e-24 RING/U-box superfamily protein (.1) AT5G13250 95 / 4e-21 RING finger protein (.1) AT1G28080 66 / 7e-12 RING finger protein (.1) AT1G03770 45 / 0.0001 ATRING1B ARABIDOPSIS THALIANA RING 1B, RING 1B (.1.2.3) AT5G44280 45 / 0.0001 ATRING1A ARABIDOPSIS THALIANA RING 1A, RING 1A (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G054400 [exp] 652 / 0 AT2G30580 310 / 5e-102 DREB2A-interacting protein 2 (.1) Potri.005G219000 [exp] 394 / 2e-134 AT2G30580 399 / 5e-137 DREB2A-interacting protein 2 (.1) Potri.002G044100 [exp] 358 / 2e-120 AT2G30580 382 / 2e-130 DREB2A-interacting protein 2 (.1) Potri.010G077800 [exp] 343 / 2e-114 AT2G30580 352 / 4e-118 DREB2A-interacting protein 2 (.1) Potri.005G054100 [exp] 174 / 6e-51 AT2G30580 145 / 4e-40 DREB2A-interacting protein 2 (.1) Potri.008G161500 [exp] 175 / 6e-50 AT2G30580 317 / 4e-105 DREB2A-interacting protein 2 (.1) Potri.003G164800 [exp] 96 / 1e-21 AT5G13250 218 / 1e-67 RING finger protein (.1) Potri.001G062700 [exp] 96 / 2e-21 AT5G13250 202 / 2e-61 RING finger protein (.1) Potri.004G137200 [exp] 62 / 1e-10 AT5G13250 92 / 9e-21 RING finger protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003261 [exp] 380 / 2e-128 AT2G30580 274 / 9e-88 DREB2A-interacting protein 2 (.1) Lus10006558 [exp] 350 / 3e-118 AT2G30580 252 / 2e-80 DREB2A-interacting protein 2 (.1) Lus10021993 [exp] 335 / 1e-111 AT2G30580 276 / 5e-89 DREB2A-interacting protein 2 (.1) Lus10014749 [exp] 335 / 2e-111 AT2G30580 391 / 1e-133 DREB2A-interacting protein 2 (.1) Lus10042532 [exp] 326 / 3e-108 AT1G06770 267 / 9e-86 DREB2A-interacting protein 1 (.1.2) Lus10033860 [exp] 322 / 2e-106 AT2G30580 386 / 1e-131 DREB2A-interacting protein 2 (.1) Lus10002575 [exp] 50 / 2e-06 AT5G13250 90 / 9e-20 RING finger protein (.1) Lus10018609 [exp] 49 / 8e-06 AT5G44280 375 / 3e-124 ARABIDOPSIS THALIANA RING 1A, RING 1A (.1.2) Lus10039845 [exp] 49 / 8e-06 AT5G44280 370 / 2e-122 ARABIDOPSIS THALIANA RING 1A, RING 1A (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF00097 [poplar] [flax] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Potri.013G042000.1 pacid=42811788 polypeptide=Potri.013G042000.1.p locus=Potri.013G042000 ID=Potri.013G042000.1.v4.1 annot-version=v4.1 ATGGCGGGACAGACTGTCAAAGTCCAGAGACAGGTGCTCGAGGCATGCATGACATGTCCTCTTTGTAACAAGCTCTTAAAAGAAGCTACTACGATTTCTT TGTGTCTCCATTCCTTCTGCAGGAAGTGCATATATGAAAAGCTCTCAGATGAAGAGGTAGATTGTTGTCCTGTATGCAACATTGATCTGGGTTGTCTGCC AGTCGAGAAACTCAGGCCAGACCATAATTTGCAAGATATAAGGGCCAAAGTATTTCCTTTTAAGAGAAGAAAAGTTAATGCCCCTGAAATTATGCCTTCG ATTGCATTGCCAGCAAAAAGAAAGGAGAGATCGTTATCATCATTGGTCGTCAGCACTCCCAAAGTGCCAATTCAAAATGGCTTGACAGGAAGGAGATCCA AAGCTGGTGCCAGAAAGGCCGCTGCATTACGAGGATGCAATTTTACTGTTGAGGAATCCAAGAAAGAAGATTCTGCTGAGGATAATCCGATGAGCCCAAG CTCACCAGGGTCTCCTGTCAAAAGTATTCAAAAGAGAAGGCTGGATTCCTCTGTGGCTGATCCTTCTACTGAGCAAAGACGTAATGATGATGACGAGGAT GATGATGTTGAAATAATTGAAGGGAAGGCTGATCTATGGACCCCCTTGAATTGTCTTGTTGAAGCTGCGAACAGAACCAAGTCCTCCAAATCGCATTCAC AAGGGCTGTCTTTAGTCAAATCTGGCATGCTTGATGATCCTGATTGTGAACCTCATCTGTATGAAACAAAATCCCGAGCAGAATCACCCGGTGGTCATCA CAATGAAGTATATATGTCTAAAACAAAAAATAAGGAGCATGGACAGGGAATAGGAGTCCAAGATGACAAGAATGGGAAAAATTCACTTCCCATATCAGTG AAGCGGAGAAGGTTAACTGCAGCACGAAAAAGGGCAGCTCTGTCTGAGGGGTTGAGTGCCTCAGCTCAAGCAATGATAGATGCTGCAGGAGCTAAGAGCA ATAGAAGAAATGGTCCAATATGGTTCTCATTGGTTGCCTCTGAAGACCAGAAAGAAGATGCTTCCTTGCCGCAGATATCCACATGCTACTTGAGGATTAA GGATGGCAAAATGCCTGTGTCTTTCATTCAGAAGTACCTTGTAAAGAAACTTGATCTCGATAGTGAGACTGAGGTGGAAATACTTTGCCGGGGTCAGCCC GTCGGGCCAACTTTGCCATTACAGAACTTAGTAGACTTGTGGTTTCGAACCGGTTCGACATCAAAAAAAGTACCAGCCTCTGTGGGTTCGTCAGCTAAGG ACTTCGTGATGGTATTGTCATATTGTCGGAAAGTCCAAGAGTCTTAA
AA sequence Show only first row Show all	>Potri.013G042000.1 pacid=42811788 polypeptide=Potri.013G042000.1.p locus=Potri.013G042000 ID=Potri.013G042000.1.v4.1 annot-version=v4.1 MAGQTVKVQRQVLEACMTCPLCNKLLKEATTISLCLHSFCRKCIYEKLSDEEVDCCPVCNIDLGCLPVEKLRPDHNLQDIRAKVFPFKRRKVNAPEIMPS IALPAKRKERSLSSLVVSTPKVPIQNGLTGRRSKAGARKAAALRGCNFTVEESKKEDSAEDNPMSPSSPGSPVKSIQKRRLDSSVADPSTEQRRNDDDED DDVEIIEGKADLWTPLNCLVEAANRTKSSKSHSQGLSLVKSGMLDDPDCEPHLYETKSRAESPGGHHNEVYMSKTKNKEHGQGIGVQDDKNGKNSLPISV KRRRLTAARKRAALSEGLSASAQAMIDAAGAKSNRRNGPIWFSLVASEDQKEDASLPQISTCYLRIKDGKMPVSFIQKYLVKKLDLDSETEVEILCRGQP VGPTLPLQNLVDLWFRTGSTSKKVPASVGSSAKDFVMVLSYCRKVQES

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G30580		BMI1A, DRIP2	DREB2A-interacting protein 2 (...		Potri.013G042000 [exp]	0	1
AT5G04250			Cysteine proteinases superfami...		Potri.008G036700 [exp]	3.87	0.7512
AT3G19440			Pseudouridine synthase family ...		Potri.009G095700 [exp]	5.38	0.7647
AT3G56200			Transmembrane amino acid trans...		Potri.010G181800 [exp]	7.74	0.7632
AT4G39370		UBP27	ubiquitin-specific protease 27...		Potri.007G077100 [exp]	10.72	0.7282	Pt-UBP27.1
AT1G09530	bHLH	PIF3, POC1, PAP...	PHOTOCURRENT 1, PHYTOCHROME-AS...		Potri.005G001800 [exp]	16.52	0.6953	Pt-PIF3.2
AT1G75750		GASA1	GAST1 protein homolog 1 (.1.2)		Potri.002G022600 [exp]	22.24	0.6939	GASA1.1
AT5G28770	bZIP	BZO2H3, ATBZIP6...	Arabidopsis thaliana basic leu...		Potri.005G053200 [exp]	28.98	0.6888	Pt-BZO2.3
AT1G49180			protein kinase family protein ...		Potri.019G007200 [exp]	31.28	0.6904
AT3G18960	B3		AP2/B3-like transcriptional fa...		Potri.012G093200 [exp]	33.67	0.6725
AT5G64260		EXL2, MSJ1.10	EXORDIUM like 2 (.1)		Potri.014G126000 [exp]	34.49	0.6914

Compare expression of checked genes

Potri.013G042000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.