Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04710 619 / 0 TPR10 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3) AT4G12400 96 / 4e-21 Hop3 Hop3, stress-inducible protein, putative (.1.2) AT2G03430 87 / 2e-19 Ankyrin repeat family protein (.1) AT1G62740 87 / 6e-18 Hop2 Hop2, stress-inducible protein, putative (.1) AT1G04190 79 / 8e-16 TPR3 tetratricopeptide repeat 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G12270 77 / 6e-15 Hop1 Hop1, stress-inducible protein, putative (.1) AT5G13530 77 / 1e-14 KEG KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2) AT2G31820 75 / 4e-14 Ankyrin repeat family protein (.1) AT1G05640 74 / 8e-14 Ankyrin repeat family protein (.1) AT5G20350 73 / 1e-13 TIP1 TIP GROWTH DEFECTIVE 1, Ankyrin repeat family protein with DHHC zinc finger domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G054800 [exp] 792 / 0 AT3G04710 611 / 0.0 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3) Potri.005G219201 [exp] 255 / 9e-81 AT3G04710 221 / 9e-68 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3) Potri.010G161300 [exp] 88 / 1e-19 AT2G03430 356 / 1e-125 Ankyrin repeat family protein (.1) Potri.010G185200 [exp] 91 / 2e-19 AT2G03430 76 / 3e-15 Ankyrin repeat family protein (.1) Potri.001G029600 [exp] 84 / 9e-17 AT5G13530 2587 / 0.0 KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2) Potri.010G082900 [exp] 81 / 9e-17 AT1G04190 540 / 0.0 tetratricopeptide repeat 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G030000 [exp] 81 / 3e-16 AT2G28840 619 / 0.0 XB3 ortholog 1 in Arabidopsis thaliana (.1.2) Potri.008G156500 [exp] 79 / 4e-16 AT1G04190 540 / 0.0 tetratricopeptide repeat 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G113400 [exp] 78 / 3e-15 AT4G12400 830 / 0.0 Hop3, stress-inducible protein, putative (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006559 [exp] 628 / 0 AT3G04710 581 / 0.0 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3) Lus10003260 [exp] 628 / 0 AT3G04710 587 / 0.0 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3) Lus10041189 [exp] 89 / 3e-19 AT1G04190 516 / 0.0 tetratricopeptide repeat 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10021905 [exp] 83 / 3e-17 AT1G04190 515 / 0.0 tetratricopeptide repeat 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10028919 [exp] 81 / 6e-16 AT1G62740 890 / 0.0 Hop2, stress-inducible protein, putative (.1) Lus10015687 [exp] 81 / 6e-16 AT3G02850 1231 / 0.0 STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1) Lus10037694 [exp] 80 / 2e-15 AT3G02850 659 / 0.0 STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1) Lus10004336 [exp] 78 / 6e-15 AT1G62740 873 / 0.0 Hop2, stress-inducible protein, putative (.1) Lus10016561 [exp] 74 / 6e-14 AT2G28840 640 / 0.0 XB3 ortholog 1 in Arabidopsis thaliana (.1.2) Lus10024597 [exp] 73 / 1e-13 AT1G62740 886 / 0.0 Hop2, stress-inducible protein, putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF00515 [poplar] [flax] TPR_1 Tetratricopeptide repeat CL0465 [poplar] [flax] Ank PF12796 [poplar] [flax] Ank_2 Ankyrin repeats (3 copies) CL0020 [poplar] [flax] TPR PF13414 [poplar] [flax] TPR_11 TPR repeat
Representative CDS sequence Show only first row Show all	>Potri.013G042300.1 pacid=42810995 polypeptide=Potri.013G042300.1.p locus=Potri.013G042300 ID=Potri.013G042300.1.v4.1 annot-version=v4.1 ATGGCTTCTGAAGCCCTAGCAGCGAGGCAGAAAGTTCAGCATTTTCTTACTGCTGCTTGTGTAGGGAATCTTGATCTTCTTAAAAATATAGCTTCACAGC TTGATGAAGGGAGCGGAATGTCGAATACTGTGGCAGATATAAAGGATGCTAATAAACGAGGGGCACTTCATTTTGCGGCAAGAGAAGGACAGACTGAGGT TTGCAAGTATTTGATTGAGGAATTGAAGCTTGATGTTGATACAAAAGATGAAGATGGTGAGACTCCTATTATTCATGCTGCTCGGCAAGGACATACTGCC ACTGCTAAATATCTTCTTGATCAGGGTGCCAATCCTGTTATGCGAAGTGATGTAGGGGCCACAGCCTTGCACCACTCTGCAGGGATAGGAAATAATGAAT TGATGGAGTATTTACTTTCTAAGGGTGCTGAGGTTGATTCACAAAGTGACGCTGGTACTCCTTTAATCTGGGCTGCTGGGCATGGCCAACAGGATGCTTT GAAAGTGTTGCTGGAGCACCATGCGAATCCTAATGCTGAAACAGAAGATGGTGTAACTCCATTATTATCAGCTGTAGCAGCTGGTTCATTAACATGCCTA GAGTTGTTGGTTCAGGCTGGTGCAGATGTGAATGTTGCTTCTGGAGGAGCAACTCCGCTGCACATTGCTGCTGATATTGGAAGCCCAGAAATTTTGAACT GTTTGTTGGAAGCTGGAGCTGATCCTAATGTCACTGATGAGGATGGTCAGAAACCAATACAGGTTGCAGCTGCAAGAGGTAACCGTGCTGCTGTTGAGAT TCTTTTCCCCTTGACAACAAAAGTTAAGAGCATCTCTAAGTGGACTGTCGATGGAATTCTTGAACACATGCAGTCTGAAGCTAACAAAGTGGAAGAAACA CAGAAAGTAAAGGAAGTTGACGCTTCAGGGGACACAGAAACACTTAAAAGAGATCTGCCTGAGGTGTCACCTGAAGCAAAGGAGAGAGCTGCTGAAGCAA AATCAAGAGGAGATGATGCTTTCAAACGAAACGAATATCTTACAGCAGTAAATGATTATGCACAAGCAATTGATCTGGATCCCACAAATGCTGCTGTGCT TTCGAATAGAAGCCTGTGTTGGATTCGATTGGGGAAACCTGACCAAGCATTAGCTGATGCAAAGGCCTGCAGAGAGCTAAAACCTGATTGGCCAAAAGCT TGGTATCGGGAAGGCGCAGCTCTGCGCTTGTTGCAGAGGTTTGATGAAGCAGCAAATTCCTTTTATGAGGGTGTGAAGCTTGACCCTGAAAATAAGGAGC TTGTGAAATCCTTTAGGGAAGCAGTTGATGCTGGGAGAAAGTTTCATGGCACAGATCAGGGAAAACCATGA
AA sequence Show only first row Show all	>Potri.013G042300.1 pacid=42810995 polypeptide=Potri.013G042300.1.p locus=Potri.013G042300 ID=Potri.013G042300.1.v4.1 annot-version=v4.1 MASEALAARQKVQHFLTAACVGNLDLLKNIASQLDEGSGMSNTVADIKDANKRGALHFAAREGQTEVCKYLIEELKLDVDTKDEDGETPIIHAARQGHTA TAKYLLDQGANPVMRSDVGATALHHSAGIGNNELMEYLLSKGAEVDSQSDAGTPLIWAAGHGQQDALKVLLEHHANPNAETEDGVTPLLSAVAAGSLTCL ELLVQAGADVNVASGGATPLHIAADIGSPEILNCLLEAGADPNVTDEDGQKPIQVAAARGNRAAVEILFPLTTKVKSISKWTVDGILEHMQSEANKVEET QKVKEVDASGDTETLKRDLPEVSPEAKERAAEAKSRGDDAFKRNEYLTAVNDYAQAIDLDPTNAAVLSNRSLCWIRLGKPDQALADAKACRELKPDWPKA WYREGAALRLLQRFDEAANSFYEGVKLDPENKELVKSFREAVDAGRKFHGTDQGKP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G04710		TPR10	tetratricopeptide repeat 10, a...		Potri.013G042300 [exp]	0	1
AT3G58610			ketol-acid reductoisomerase (....		Potri.004G043700 [exp]	1.00	0.8905	Pt-PGAAIR.3
AT5G19750			Peroxisomal membrane 22 kDa (M...		Potri.016G029700 [exp]	4.89	0.7991
AT4G30700			Pentatricopeptide repeat (PPR)...		Potri.016G077700 [exp]	4.89	0.8236
AT1G78590		NADK3, ATNADK-3	ARABIDOPSIS THALIANA NADH KINA...		Potri.011G104400 [exp]	5.19	0.8124
AT4G33100			unknown protein		Potri.006G224400 [exp]	5.47	0.7779
AT1G04270		RPS15	cytosolic ribosomal protein S1...		Potri.005G055534 [exp]	7.41	0.8016
AT2G17210			Tetratricopeptide repeat (TPR)...		Potri.004G205900 [exp]	7.48	0.7382
AT3G11220		ELO1	ELONGATA 1, Paxneb protein-rel...		Potri.010G189500 [exp]	8.48	0.7831
AT2G22400			S-adenosyl-L-methionine-depend...		Potri.007G096100 [exp]	10.19	0.7882
AT1G08450		AtCRT3, PSL1, E...	PRIORITY IN SWEET LIFE 1, EMS-...		Potri.007G131500 [exp]	15.36	0.7095

Compare expression of checked genes

Potri.013G042300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.