Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04690 1036 / 0 ANX1 ANXUR1, Malectin/receptor-like protein kinase family protein (.1) AT5G28680 1020 / 0 ANX2 ANXUR2, Malectin/receptor-like protein kinase family protein (.1) AT3G51550 800 / 0 FER FERONIA, Malectin/receptor-like protein kinase family protein (.1) AT5G39000 587 / 0 Malectin/receptor-like protein kinase family protein (.1) AT1G30570 566 / 0 HERK2 hercules receptor kinase 2 (.1) AT5G54380 563 / 0 THE1 THESEUS1, protein kinase family protein (.1) AT5G61350 555 / 0 Protein kinase superfamily protein (.1) AT3G46290 541 / 1e-180 HERK1 hercules receptor kinase 1 (.1) AT5G38990 542 / 2e-180 Malectin/receptor-like protein kinase family protein (.1) AT2G21480 539 / 3e-179 Malectin/receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G055200 [exp] 1485 / 0 AT5G28680 1026 / 0.0 ANXUR2, Malectin/receptor-like protein kinase family protein (.1) Potri.010G145600 [exp] 958 / 0 AT3G04690 1027 / 0.0 ANXUR1, Malectin/receptor-like protein kinase family protein (.1) Potri.008G105500 [exp] 955 / 0 AT3G04690 999 / 0.0 ANXUR1, Malectin/receptor-like protein kinase family protein (.1) Potri.006G110000 [exp] 795 / 0 AT3G51550 1256 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Potri.016G138700 [exp] 781 / 0 AT3G51550 1252 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Potri.017G096600 [exp] 659 / 0 AT3G51550 829 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Potri.017G096800 [exp] 657 / 0 AT3G51550 823 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Potri.017G095900 [exp] 654 / 0 AT3G51550 845 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Potri.017G096000 [exp] 648 / 0 AT3G51550 832 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042537 [exp] 898 / 0 AT3G04690 942 / 0.0 ANXUR1, Malectin/receptor-like protein kinase family protein (.1) Lus10021998 [exp] 887 / 0 AT3G04690 929 / 0.0 ANXUR1, Malectin/receptor-like protein kinase family protein (.1) Lus10016907 [exp] 842 / 0 AT3G04690 967 / 0.0 ANXUR1, Malectin/receptor-like protein kinase family protein (.1) Lus10014185 [exp] 756 / 0 AT3G51550 1254 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Lus10022728 [exp] 688 / 0 AT3G51550 1184 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Lus10037887 [exp] 591 / 0 AT5G54380 1279 / 0.0 THESEUS1, protein kinase family protein (.1) Lus10032976 [exp] 563 / 0 AT3G51550 682 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Lus10017478 [exp] 556 / 0 AT4G39110 1149 / 0.0 Malectin/receptor-like protein kinase family protein (.1) Lus10003942 [exp] 555 / 0 AT3G51550 656 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Lus10032971 [exp] 555 / 0 AT3G51550 706 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0202 [poplar] [flax] GBD PF11721 [poplar] [flax] Malectin Malectin domain
Representative CDS sequence Show only first row Show all	>Potri.013G042500.1 pacid=42811945 polypeptide=Potri.013G042500.1.p locus=Potri.013G042500 ID=Potri.013G042500.1.v4.1 annot-version=v4.1 ATGCATACTAATATCCATGCTTTGCTTTCTCTAGCTTGTTTTGCTCTTGTTTTCAATGCCCTTTATGTGTCAGGTATAGGGTCACAGCCACGGAGTTTGT CTTTGAACTGTGGATCAGAAAATGGTGGCACAGATGGTGATGGGCGAAAATGGGAATCAGATGTCAAATACATTGCTGGAAATTATCCACACGCCAGAGC TCAATACCAAGACTCTTCAATTGTCTCTGAGGTTCCATACATGGATGCCAGGATTTTCACATCCGAAGTAACCTATAACCTCCCCATCATGTTGAAAACG CGCTATTGGCTCAGGCTCTATTTCTATCCTTCAGAATATTCTGGTCTCAATATCGCAAACTCCTATTTCTCTGTGGTCGCAGGAGGGGTTACTCTCCTGA ACAATTTTAGTGCTTCGATCACAGCTCAGGCTCTCACCCAGGCTTACCTCATCAAAGAGTATTCTCTAGCTCCCATGAATCATCAGATTCTCAATGTCAC CTTTAAGCCAGCAGATAGGCCTGATGCTTTTGCTTTTATCAATGCCATAGAGCTGGTTCCAATGACTGACCTCTTTGGTTCGGGGACAATGGTGGGGTTT GCTGACCAAAATTTTGACGCGGAGAGTGCAAATTTGGAGACAATGTATAGATTGAATGTAGCAGGGCAGTATATTTCACCCACTAAAGACTCCGGTAATC TTACAAGAACCTGGTATAATGACGCGCCTTATTTATTTGGTGCGGCAACTGGGGTTAATTTGCAGACTAATGAAAGTTATAAAGTCCAGTACGGAGAATT GACAGAGTCTGTAGCACCTCCTGATGTTTACAGAACGGCAAGAGGCATGGGATACCACAAGGACCTCAACTTGGCTTTCAACTTGACATGGCTGTTTCAG GCTGATGCCAATTTCACGTATGTTGTGAGGCTGCATTTCTGTGAGTTCCAATTAACTAAAGTCAATCAGAAAGTCTTCAACATATACATCAACAATCAAA CTGCCCAGGTTGAGCCTAATGCAGCTGATATTATCGGGTGGACAGGAGAAATTGGAGTGCCAACATATAAAGACTATGCAGTTTTTGTGAAGGACAGGCC AGGCGATGAAGAAATTCGGGTGGACTTGCACCCAGCAACCTATTCGAAGCCTGAGTTTTATGATGCAACACTCAATGGAATAGAGGTATTCAAGATGAGT GATAGGAATAATAACTTGGCAGGACCTAACCCTGTGTTATCAGAGATGCAAGCTCAACATATAGCTAAAGCTAGCCACAAGAAATTTCAGACAGATCACA AAACATTAACGATTGTAGGAACTGCTGGTGGAGTTGGCTTCTTTTTTGTTGCTGCGGCTTGCATTGCTGCTTATAGAAGGAAGAAGATAATTCCTGGCTT TGATTCACATACATCTAGCTGGCTACCAGTCTATGGAAACTCCCATACTGGAACCAAATCAACTATCTCTGGCAAGAGTACTCAAAGCGGTCACCTCTCT TCACTGGCTCAAGGTCTTTCTCGCCATTTCACGCTTCCAGAGATACTAAGGGCAACCAAAAATTTTGATGATTCTAATGTCATTGGTGTTGGAGGCTTCG GGAAAGTGTACAAAGGTGTTATTGATCAAACAACCAAAGTGGCCATCAAAAGATCAAATCCGCAATCAGAACAGGGAGTTAATGAGTTCATGACTGAGAT TGAGATGCTTTCGAAGTTGAGACACAAGCATTTGGTCTCGTTGATTGGTTTCTGCGATGAAGATGGTGAGATGTGCCTGGTTTATGACTACATGGCACTT GGGACTATGAGGGAGCATCTTTACAATACCAAGAAACCTCGTCTGTCATGGAAGCAAAGGTTGGAGGTTTGTGTTGGAGCAGCAAGGGGACTTCACTACC TTCACACTGGGGCTAAGTACACAATCATTCACAGGGATGTCAAGAGCACAAACATTCTGTTGGACGAGAATTGGGTTGCCAAGGTTTCAGATTTCGGGCT CTCAAAAACTGGTCCTGACATGGATAAGGGCCATGTTAGTACTGTGGTCAAGGGCAGCTTCGGCTACTTGGATCCTGAATACTTTAGGAGGCAACAACTA ACTGAAAAGTCTGATGTCTACTCGTTTGGAGTTGTCCTTTTCGAGGCTCTATGTGGAAGGCCTGCCCTCAATCCGAACCTACCAAAGGAACAAGTTAGTC TCGCTGACTGGGCTCTTCATTGTCAAAGAAAAGGAATTATTGAGGACATCATTGATCCTCACGTCAAGGGAAAAATCACCACTGAATGCCTGAAGAAGTT CGCAGATACAGCTGAGAAATGCTTGGCTGAATCAGGACCCGAACGCCCTAACATGGGTGATGTCCTATGGAATCTTGAATTGGCCCTCCAACTGCAGGAC AACCCTGAAGGTTCAAAGCGTAGCTCAAAAGGTGAGGGAAGTGAAACTTCTGAAGAGAGTATAAGAAACCGCAAATTGGAAATGCATTATAGCAATCTCA GCCTCGGAAGCAATAGTGAAAAGACTGCAGAATCAGATGACTCTGGGGATATCTTCTCTCAGATTGTCAATCCAAAAGGGAGATGA
AA sequence Show only first row Show all	>Potri.013G042500.1 pacid=42811945 polypeptide=Potri.013G042500.1.p locus=Potri.013G042500 ID=Potri.013G042500.1.v4.1 annot-version=v4.1 MHTNIHALLSLACFALVFNALYVSGIGSQPRSLSLNCGSENGGTDGDGRKWESDVKYIAGNYPHARAQYQDSSIVSEVPYMDARIFTSEVTYNLPIMLKT RYWLRLYFYPSEYSGLNIANSYFSVVAGGVTLLNNFSASITAQALTQAYLIKEYSLAPMNHQILNVTFKPADRPDAFAFINAIELVPMTDLFGSGTMVGF ADQNFDAESANLETMYRLNVAGQYISPTKDSGNLTRTWYNDAPYLFGAATGVNLQTNESYKVQYGELTESVAPPDVYRTARGMGYHKDLNLAFNLTWLFQ ADANFTYVVRLHFCEFQLTKVNQKVFNIYINNQTAQVEPNAADIIGWTGEIGVPTYKDYAVFVKDRPGDEEIRVDLHPATYSKPEFYDATLNGIEVFKMS DRNNNLAGPNPVLSEMQAQHIAKASHKKFQTDHKTLTIVGTAGGVGFFFVAAACIAAYRRKKIIPGFDSHTSSWLPVYGNSHTGTKSTISGKSTQSGHLS SLAQGLSRHFTLPEILRATKNFDDSNVIGVGGFGKVYKGVIDQTTKVAIKRSNPQSEQGVNEFMTEIEMLSKLRHKHLVSLIGFCDEDGEMCLVYDYMAL GTMREHLYNTKKPRLSWKQRLEVCVGAARGLHYLHTGAKYTIIHRDVKSTNILLDENWVAKVSDFGLSKTGPDMDKGHVSTVVKGSFGYLDPEYFRRQQL TEKSDVYSFGVVLFEALCGRPALNPNLPKEQVSLADWALHCQRKGIIEDIIDPHVKGKITTECLKKFADTAEKCLAESGPERPNMGDVLWNLELALQLQD NPEGSKRSSKGEGSETSEESIRNRKLEMHYSNLSLGSNSEKTAESDDSGDIFSQIVNPKGR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G04690		ANX1	ANXUR1, Malectin/receptor-like...		Potri.013G042500 [exp]	0	1
AT5G42650		CYP74A, AOS, DD...	DELAYED DEHISCENCE 2, CYTOCHRO...		Potri.009G109700 [exp]	17.32	0.7261	Pt-AOS.5,CYP74C8
AT3G49190			O-acyltransferase (WSD1-like) ...		Potri.013G085101 [exp]	19.64	0.7178
AT3G51060		SRS1, STY1	STYLISH 1, SHI RELATED SEQUENC...		Potri.007G017500 [exp]	164.21	0.5974
AT3G52360			unknown protein		Potri.006G200000 [exp]	204.97	0.6211
AT3G18750		ZIK5, WNK6, ATW...	ARABIDOPSIS THALIANA WITH NO K...		Potri.014G101500 [exp]	219.20	0.6416

Compare expression of checked genes

Potri.013G042500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.