Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-WRKY39.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04670 334 / 8e-114 WRKY ATWRKY39, WRKY39 WRKY DNA-binding protein 39 (.1.2) AT5G28650 330 / 4e-112 WRKY ATWRKY74, WRKY74 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 74, WRKY DNA-binding protein 74 (.1) AT2G30590 286 / 2e-94 WRKY WRKY21 WRKY DNA-binding protein 21 (.1) AT4G31550 154 / 4e-44 WRKY ATWRKY11, WRKY11 WRKY DNA-binding protein 11 (.1.2) AT2G24570 150 / 1e-42 WRKY ATWRKY17, WRKY17 WRKY DNA-binding protein 17 (.1) AT4G24240 150 / 4e-42 WRKY ATWRKY7, WRKY7 WRKY DNA-binding protein 7 (.1) AT2G23320 148 / 7e-42 WRKY WRKY15 WRKY DNA-binding protein 15 (.1.2) AT1G29280 106 / 2e-26 WRKY ATWRKY65, WRKY65 WRKY DNA-binding protein 65 (.1) AT2G34830 103 / 2e-24 WRKY ATWRKY35, WRKY35, MEE24 maternal effect embryo arrest 24, WRKY DNA-binding protein 35 (.1) AT3G58710 100 / 4e-24 WRKY ATWRKY69, WRKY69 RABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 69, WRKY DNA-binding protein 69 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G055300 [exp] 577 / 0 AT3G04670 361 / 1e-124 WRKY DNA-binding protein 39 (.1.2) Potri.005G219500 [exp] 368 / 4e-127 AT2G30590 352 / 3e-120 WRKY DNA-binding protein 21 (.1) Potri.002G043500 [exp] 367 / 1e-126 AT2G30590 345 / 1e-117 WRKY DNA-binding protein 21 (.1) Potri.018G139300 [exp] 163 / 1e-47 AT4G31550 284 / 5e-95 WRKY DNA-binding protein 11 (.1.2) Potri.005G141400 [exp] 159 / 1e-45 AT4G24240 236 / 2e-75 WRKY DNA-binding protein 7 (.1) Potri.002G123300 [exp] 156 / 2e-44 AT4G24240 275 / 2e-90 WRKY DNA-binding protein 7 (.1) Potri.007G047400 [exp] 155 / 4e-44 AT4G24240 283 / 4e-94 WRKY DNA-binding protein 7 (.1) Potri.014G024200 [exp] 153 / 3e-43 AT4G24240 261 / 8e-85 WRKY DNA-binding protein 7 (.1) Potri.018G008500 [exp] 152 / 4e-43 AT4G31550 315 / 1e-106 WRKY DNA-binding protein 11 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014745 [exp] 330 / 4e-112 AT3G04670 362 / 2e-124 WRKY DNA-binding protein 39 (.1.2) Lus10033857 [exp] 327 / 9e-111 AT3G04670 362 / 3e-124 WRKY DNA-binding protein 39 (.1.2) Lus10018776 [exp] 261 / 5e-85 AT2G30590 322 / 6e-109 WRKY DNA-binding protein 21 (.1) Lus10024864 [exp] 260 / 1e-84 AT2G30590 325 / 7e-110 WRKY DNA-binding protein 21 (.1) Lus10042538 [exp] 244 / 5e-79 AT5G28650 301 / 7e-102 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 74, WRKY DNA-binding protein 74 (.1) Lus10021999 [exp] 244 / 1e-78 AT5G28650 297 / 4e-100 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 74, WRKY DNA-binding protein 74 (.1) Lus10041600 [exp] 153 / 3e-43 AT2G23320 276 / 2e-91 WRKY DNA-binding protein 15 (.1.2) Lus10020136 [exp] 149 / 4e-42 AT4G31550 401 / 8e-141 WRKY DNA-binding protein 11 (.1.2) Lus10026936 [exp] 149 / 6e-42 AT4G31550 409 / 1e-143 WRKY DNA-binding protein 11 (.1.2) Lus10006261 [exp] 146 / 1e-40 AT2G23320 273 / 2e-90 WRKY DNA-binding protein 15 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [poplar] [flax] WRKY-GCM1 PF03106 [poplar] [flax] WRKY WRKY DNA -binding domain CL0274 [poplar] [flax] PF10533 [poplar] [flax] Plant_zn_clust Plant zinc cluster domain
Representative CDS sequence Show only first row Show all	>Potri.013G042600.1 pacid=42810831 polypeptide=Potri.013G042600.1.p locus=Potri.013G042600 ID=Potri.013G042600.1.v4.1 annot-version=v4.1 ATGGAGGAGGTTGAGGAGGTACACAAGGCAGCTATTGAGAGCTGCAATAGAGTTATTGGCCTTTTGTGTCAACAAAAAGATCAAGTCCAGGGTAGGAACT TAATGGTGGAAACTAGAGAGACTGTGTTTAAGTTTAAGAGAGTTATATCTCTTTTAAGCACTGGTTTAGGTCATGGAAGAGTAAGAAAGATGAAGAAGCT TAGACCATCTTTGCCCCAAAACATCTTCCTAGATAGTCCTAATTGCAAAACAGTTTTATCACCAAAACCTCTCCAAATGGTGCCTCCTAATTTTCTTGAA ACCCCACTTACTGACATGGATGCTAAGTCTAAACCTTCTATCCAAATTTCCCAGAAAATGCTTCTTGAAAACCCAGTACTTGAGTTGAACTCAAAAATCA GGCCCCCTGTGCAAATTATGCAAACAAAACCACCACAAAACTTCCAGCTTCCCCAACAGCATCAGCAGATACAGAGGATGCACTTTCAGCAGCAGCAGCA GCAAATGAAGTATCAGGCTGATAGGGTGTATTCTAGGAGTAATGGTGGGATAAACCTTAAGTTTGATGGGTCTACTTGCACACCAACCATGTCATCCACA AGATCATTCATATCATCTCTGAGCATGGATGGTGCTGTGTCTACTTTTGATGGAGACTCTTTCCATTTGATTGGTATGCCTCACTCATCTGATCACATCT CACAACAAACAAGGAGGAGGTGTTCTGGTAGAGGAGAAGATGGGAATGCCAAATGTTCTAGCAGTGGTAAATGCCATTGTTCAAAGAGGAGGAAACTGAG GGTGAAGAGATCTATCAAAGTTCCTGCAATTAGCAACAAGGTGGCAGATATTCCTCCTGATGAGTATTCATGGAGGAAGTATGGACAAAAGCCAATTAAG GGCTCTCCGCATCCTAGGGGATACTATAAATGTAGCAGTCTGAGGGGTTGCCCGGCAAGGAAGCACGTTGAGAGATGCCTGGAAGACCCTTCAATGCTAA TTGTAACCTATGAAGGTGAGCATAACCATTCCAGGTTGATCTCATCACAGTCTGCGCATACATGA
AA sequence Show only first row Show all	>Potri.013G042600.1 pacid=42810831 polypeptide=Potri.013G042600.1.p locus=Potri.013G042600 ID=Potri.013G042600.1.v4.1 annot-version=v4.1 MEEVEEVHKAAIESCNRVIGLLCQQKDQVQGRNLMVETRETVFKFKRVISLLSTGLGHGRVRKMKKLRPSLPQNIFLDSPNCKTVLSPKPLQMVPPNFLE TPLTDMDAKSKPSIQISQKMLLENPVLELNSKIRPPVQIMQTKPPQNFQLPQQHQQIQRMHFQQQQQQMKYQADRVYSRSNGGINLKFDGSTCTPTMSST RSFISSLSMDGAVSTFDGDSFHLIGMPHSSDHISQQTRRRCSGRGEDGNAKCSSSGKCHCSKRRKLRVKRSIKVPAISNKVADIPPDEYSWRKYGQKPIK GSPHPRGYYKCSSLRGCPARKHVERCLEDPSMLIVTYEGEHNHSRLISSQSAHT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G04670	WRKY	ATWRKY39, WRKY3...	WRKY DNA-binding protein 39 (....		Potri.013G042600 [exp]	0	1	Pt-WRKY39.2
AT5G57130			Clp amino terminal domain-cont...		Potri.018G140900 [exp]	4.24	0.8769
AT4G29920			Double Clp-N motif-containing ...		Potri.006G073800 [exp]	6.32	0.8619
AT2G38970			Zinc finger (C3HC4-type RING f...		Potri.010G223766 [exp]	6.70	0.8002
AT4G16790			hydroxyproline-rich glycoprote...		Potri.001G155000 [exp]	8.00	0.8722
AT3G60320			Protein of unknown function (D...		Potri.014G047400 [exp]	12.96	0.8256
AT5G60850	DOF	OBP4, AtDof5. 4	OBF binding protein 4 (.1)		Potri.004G046100 [exp]	14.07	0.8598
AT5G24280		GMI1	gamma-irradiation and mitomyci...		Potri.012G016100 [exp]	15.00	0.8281
AT1G73850			Protein of unknown function (D...		Potri.012G056400 [exp]	15.77	0.8704
AT5G20320		DCL4, ATDCL4	dicer-like 4 (.1.2)		Potri.006G188800 [exp]	17.29	0.8317	DCL905
AT5G08770			unknown protein		Potri.005G069900 [exp]	17.77	0.7822

Compare expression of checked genes

Potri.013G042600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.