Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G54460 175 / 7e-52 TPX2 (targeting protein for Xklp2) protein family (.1) AT3G23090 134 / 3e-36 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) AT3G04630 130 / 5e-35 WDL1 WVD2-like 1 (.1.2.3) AT5G28646 127 / 7e-35 WVD2 WAVE-DAMPENED 2, TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) AT2G35880 85 / 4e-18 TPX2 (targeting protein for Xklp2) protein family (.1) AT4G32330 81 / 2e-16 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2), TPX2 (targeting protein for Xklp2) protein family (.3) AT2G25480 79 / 6e-16 TPX2 (targeting protein for Xklp2) protein family (.1) AT1G70950 54 / 6e-08 TPX2 (targeting protein for Xklp2) protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G055900 [exp] 504 / 2e-180 AT1G54460 207 / 4e-64 TPX2 (targeting protein for Xklp2) protein family (.1) Potri.010G076200 [exp] 182 / 1e-53 AT3G23090 185 / 5e-55 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) Potri.008G162800 [exp] 164 / 6e-47 AT3G23090 214 / 1e-66 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) Potri.006G200400 [exp] 89 / 2e-19 AT2G35880 168 / 1e-46 TPX2 (targeting protein for Xklp2) protein family (.1) Potri.006G254400 [exp] 84 / 1e-17 AT4G32330 288 / 2e-93 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2), TPX2 (targeting protein for Xklp2) protein family (.3) Potri.016G066600 [exp] 84 / 2e-17 AT2G35880 149 / 5e-40 TPX2 (targeting protein for Xklp2) protein family (.1) Potri.018G027500 [exp] 83 / 2e-17 AT4G32330 268 / 2e-85 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2), TPX2 (targeting protein for Xklp2) protein family (.3) Potri.010G053200 [exp] 63 / 1e-10 AT3G26050 113 / 1e-26 TPX2 (targeting protein for Xklp2) protein family (.1) Potri.008G180900 [exp] 57 / 1e-08 AT3G26050 119 / 4e-28 TPX2 (targeting protein for Xklp2) protein family (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005533 [exp] 180 / 6e-54 AT1G54460 187 / 3e-57 TPX2 (targeting protein for Xklp2) protein family (.1) Lus10006563 [exp] 176 / 2e-52 AT1G54460 187 / 2e-57 TPX2 (targeting protein for Xklp2) protein family (.1) Lus10042543 [exp] 157 / 3e-45 AT1G54460 176 / 1e-52 TPX2 (targeting protein for Xklp2) protein family (.1) Lus10022003 [exp] 152 / 2e-43 AT1G54460 172 / 3e-51 TPX2 (targeting protein for Xklp2) protein family (.1) Lus10021223 [exp] 130 / 3e-34 AT3G23090 230 / 4e-73 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) Lus10022213 [exp] 121 / 1e-30 AT3G23090 220 / 2e-68 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) Lus10000016 [exp] 93 / 2e-22 AT5G28646 137 / 3e-41 WAVE-DAMPENED 2, TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) Lus10002915 [exp] 82 / 4e-17 AT4G32330 228 / 2e-70 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2), TPX2 (targeting protein for Xklp2) protein family (.3) Lus10016193 [exp] 79 / 6e-16 AT2G35880 181 / 7e-52 TPX2 (targeting protein for Xklp2) protein family (.1) Lus10029355 [exp] 79 / 8e-16 AT2G35880 185 / 3e-53 TPX2 (targeting protein for Xklp2) protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06886 [poplar] [flax] TPX2 Targeting protein for Xklp2 (TPX2) domain
Representative CDS sequence Show only first row Show all	>Potri.013G042800.3 pacid=42811259 polypeptide=Potri.013G042800.3.p locus=Potri.013G042800 ID=Potri.013G042800.3.v4.1 annot-version=v4.1 ATGGGGCGGGAACTTAAGTGTGCAGACATGGAGAAGAAGCCAAATGGTCTTGCTGTCAAGTTTAATGGTGTATCTCATGATAGAGTACATTTTGCTCCTA AACTTTCAGAAGGCGTCATCAAAGCAAAGGAATATGTGGAGAAAGAAACTGCTGAAGAATCAGAGAAGCAAGATGTGCTAGGTGTCAAAAGCACAAATTT TGATGCTGACGTGTCTGATGAGAAAGATGAGAAACCTGAAGCTCAAAAATCAAGTGATGATAGAAATTCAAGTTCTCCCTCACTAAAAGCTGGTGGTGTT GGAAATGCTCATGTCCGTCAAACTGTCCCTCAGCCATTTGCTCTGGCAACTGACAAACGTGTTGGCAGGAACACTTTCACAAATTCAAACAATGCTCAGT CCCCTGCTACTATGAAGAATTCACAGCAAAATTCACCTTCTACAGCAAGGAAGCCATTGCAACCTGATAACAAAAAGCGTCATGATGAAGAAGATAGTTG GTCTGTGGCTTCATCTACTGCTGCTTCTGTGCGAACCGTTAAATCTGTAACTGTTGGAACAGCCCCCACATTTAGGTCTGCTGAACGCGCAGCGAAGCGG AAGGAGTATTATTCAAAATTGGAAGAAAAACACCGAGCTTTGGAAAAAGAGCGAAGCCAGGCTGAGGAAAGGACCAAGGAAGAGCAAGAAGCAGCCATCA GGCAGCTTAGAAAGAACATGGCGTATAAAGCAAATCCGGTACCTAATTTCTACTATGAGCCACCTCCACCCAAGGTTGAACGCAAGAAGTTACCATTGAC CCGACCACAATCACCAAAATTAAACAGGAGAAAAAGCTGCAGTGATGCAGTTCAAACATCTCAGGAAGAAGTGGGGAAACATTGTGCTCGCCATCGCCAC AGCATCGGTAACCACAAAGATTCAACTGCCACCAGCACTGCCAAAGCTAAGGTTCAGATCAGCTCACAGACTGCTAATGGCATTCGCAAAGTCACAGGCC GATCTAAACAGGAACGTGTTACAGCAGAAGCAGTTCCCGAGAAGACTGCTGAGCCGACAAATGCAGACATCTCTGTTCAGTCATGA
AA sequence Show only first row Show all	>Potri.013G042800.3 pacid=42811259 polypeptide=Potri.013G042800.3.p locus=Potri.013G042800 ID=Potri.013G042800.3.v4.1 annot-version=v4.1 MGRELKCADMEKKPNGLAVKFNGVSHDRVHFAPKLSEGVIKAKEYVEKETAEESEKQDVLGVKSTNFDADVSDEKDEKPEAQKSSDDRNSSSPSLKAGGV GNAHVRQTVPQPFALATDKRVGRNTFTNSNNAQSPATMKNSQQNSPSTARKPLQPDNKKRHDEEDSWSVASSTAASVRTVKSVTVGTAPTFRSAERAAKR KEYYSKLEEKHRALEKERSQAEERTKEEQEAAIRQLRKNMAYKANPVPNFYYEPPPPKVERKKLPLTRPQSPKLNRRKSCSDAVQTSQEEVGKHCARHRH SIGNHKDSTATSTAKAKVQISSQTANGIRKVTGRSKQERVTAEAVPEKTAEPTNADISVQS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G54460			TPX2 (targeting protein for Xk...		Potri.013G042800 [exp]	0	1
AT4G31860			Protein phosphatase 2C family ...		Potri.018G017701 [exp]	2.44	0.8031
AT4G17220		ATMAP70-5	microtubule-associated protein...		Potri.006G018000 [exp]	3.60	0.8523
AT3G58900			F-box/RNI-like superfamily pro...		Potri.017G119200 [exp]	10.58	0.7544
AT3G22060			Receptor-like protein kinase-r...		Potri.007G120700 [exp]	11.31	0.7283
AT2G37040		PAL1, ATPAL1	PHE ammonia lyase 1 (.1)		Potri.008G038200 [exp]	13.71	0.7880	Pt-PAL.2,PAL2
AT4G12350	MYB	ATMYB42	myb domain protein 42 (.1)		Potri.001G118800 [exp]	14.31	0.7679
AT4G01070		UGT72B1, GT72B1	UDP-GLUCOSE-DEPENDENT GLUCOSYL...		Potri.014G096100 [exp]	16.52	0.7215
AT5G18170		GDH1	glutamate dehydrogenase 1 (.1)		Potri.019G034800 [exp]	17.60	0.6915	Pt-GDH1.1
AT5G20260			Exostosin family protein (.1)		Potri.018G124945 [exp]	19.07	0.7561
AT1G17950	MYB	AtMYB52, BW52, ...	myb domain protein 52 (.1)		Potri.002G073500 [exp]	19.89	0.7435

Compare expression of checked genes

Potri.013G042800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.