Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06370 86 / 1e-20 NC domain-containing protein-related (.1) AT3G02700 86 / 2e-20 NC domain-containing protein-related (.1) AT1G01225 83 / 2e-19 NC domain-containing protein-related (.1) AT5G16360 83 / 3e-19 NC domain-containing protein-related (.1) AT5G16330 77 / 3e-17 NC domain-containing protein-related (.1) AT4G00905 77 / 5e-17 NC domain-containing protein-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G203300 [exp] 97 / 7e-25 AT5G06370 396 / 4e-141 NC domain-containing protein-related (.1) Potri.004G078700 [exp] 87 / 9e-21 AT3G02700 343 / 3e-120 NC domain-containing protein-related (.1) Potri.017G142300 [exp] 84 / 1e-19 AT3G02700 328 / 2e-114 NC domain-containing protein-related (.1) Potri.014G101300 [exp] 80 / 2e-18 AT1G01225 352 / 2e-123 NC domain-containing protein-related (.1) Potri.002G174700 [exp] 79 / 5e-18 AT1G01225 333 / 7e-116 NC domain-containing protein-related (.1) Potri.005G056300 [exp] 53 / 2e-09 AT5G16330 49 / 1e-07 NC domain-containing protein-related (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029402 [exp] 95 / 7e-24 AT5G06370 410 / 3e-146 NC domain-containing protein-related (.1) Lus10030231 [exp] 89 / 2e-21 AT1G01225 360 / 1e-126 NC domain-containing protein-related (.1) Lus10005981 [exp] 82 / 5e-19 AT1G01225 360 / 8e-127 NC domain-containing protein-related (.1) Lus10010962 [exp] 70 / 1e-14 AT3G02700 268 / 8e-91 NC domain-containing protein-related (.1) Lus10004198 [exp] 0 / 1 AT5G06370 210 / 1e-68 NC domain-containing protein-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [poplar] [flax] Peptidase_CA PF04970 [poplar] [flax] LRAT Lecithin retinol acyltransferase
Representative CDS sequence Show only first row Show all	>Potri.013G043100.2 pacid=42812365 polypeptide=Potri.013G043100.2.p locus=Potri.013G043100 ID=Potri.013G043100.2.v4.1 annot-version=v4.1 ATGATAGTAGAAGAAGAAGTTCCCCCAATATTACAGGTCGAGCATGGCATTGCTGGTTGGGATATTAGACTCATACCAGAGGGTCTCCATATCTATGTGC ATCGGCCTTTGTACACCCACCATGGGATATATATAGGCGATGGGAAGGCCATTCACTTCGTAGGCCCAAAAGCCGGACCCACAAGGGCTTGCAAAAAATG TGGCTTCTCAAGAAATACGGGCCATGGAGTGGTGGAAACTTGTCTTGAGTGCTTCCTCGACGGAGGATTCCTCTGTCGATATAATTATGATGTGCCCAGA ATGATTCTTAGTATCACTTCTCATACCATGTGCCCTAATTGCACCACCACCGAGAGATCGAAATCGGGGAGTGAAATTGTTGAGACTGCAAAAGAAAAGT TGAAAGAAGGTTTCGGCAAATATAACCTCCTGTCTAACAACTGTGAGCACTTCGCAACATTCTGCAGTACAGGAACTGCCTTCAGTCAGCAAGTTAAACA TACAGCAGCACTTGCTGCAAGCCCTCTTCTGCCGCCAGCTCCTCGTTTGCTTATGTTTTACAGGAACAACATTTAA
AA sequence Show only first row Show all	>Potri.013G043100.2 pacid=42812365 polypeptide=Potri.013G043100.2.p locus=Potri.013G043100 ID=Potri.013G043100.2.v4.1 annot-version=v4.1 MIVEEEVPPILQVEHGIAGWDIRLIPEGLHIYVHRPLYTHHGIYIGDGKAIHFVGPKAGPTRACKKCGFSRNTGHGVVETCLECFLDGGFLCRYNYDVPR MILSITSHTMCPNCTTTERSKSGSEIVETAKEKLKEGFGKYNLLSNNCEHFATFCSTGTAFSQQVKHTAALAASPLLPPAPRLLMFYRNNI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G06370			NC domain-containing protein-r...		Potri.013G043100 [exp]	0	1
					Potri.006G271692 [exp]	1.41	0.9930
AT1G78980		SRF5	STRUBBELIG-receptor family 5 (...		Potri.014G001200 [exp]	4.00	0.9901
AT5G44120		ATCRA1, CRU1, C...	CRUCIFERINA, RmlC-like cupins ...		Potri.019G004400 [exp]	5.91	0.9898
AT1G51120	AP2_ERF		AP2/B3 transcription factor fa...		Potri.006G186301 [exp]	6.92	0.9831
AT1G53440			Leucine-rich repeat transmembr...		Potri.016G011601 [exp]	7.00	0.9876
AT3G18830		ATPMT5, AtPLT5	ARABIDOPSIS THALIANA POLYOL/MO...		Potri.006G158700 [exp]	8.36	0.9835
AT1G53440			Leucine-rich repeat transmembr...		Potri.010G155150 [exp]	8.94	0.9845
					Potri.001G149500 [exp]	9.48	0.9788
AT5G65140		TPPJ	trehalose-6-phosphate phosphat...		Potri.007G090900 [exp]	9.94	0.9589
AT3G54140		ATPTR1	ARABIDOPSIS THALIANA PEPTIDE T...		Potri.002G029200 [exp]	10.09	0.9716

Compare expression of checked genes

Potri.013G043100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.