Plant FIBer expression Database

Potri.013G043400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G08800 227 / 2e-61 Protein of unknown function, DUF593 (.1.2)
AT2G30690 156 / 3e-39 Protein of unknown function, DUF593 (.1)
AT1G74830 121 / 2e-28 Protein of unknown function, DUF593 (.1)
AT5G16720 106 / 2e-23 Protein of unknown function, DUF593 (.1)
AT1G18990 103 / 6e-23 Protein of unknown function, DUF593 (.1)
AT1G70750 103 / 3e-22 Protein of unknown function, DUF593 (.1)
AT5G06560 72 / 1e-12 Protein of unknown function, DUF593 (.1)
AT4G13630 60 / 7e-09 Protein of unknown function, DUF593 (.1.2)
AT4G30830 58 / 2e-08 Protein of unknown function, DUF593 (.1)
AT3G54740 58 / 2e-08 Protein of unknown function, DUF593 (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.019G012200
[exp]
1278 / 0 AT1G08800 239 / 1e-65 Protein of unknown function, DUF593 (.1.2)
Potri.019G007802
[exp]
788 / 0 AT1G08800 221 / 3e-61 Protein of unknown function, DUF593 (.1.2)
Potri.002G042500
[exp]
321 / 2e-96 AT2G30690 195 / 2e-52 Protein of unknown function, DUF593 (.1)
Potri.005G220600
[exp]
228 / 2e-62 AT1G08800 159 / 1e-39 Protein of unknown function, DUF593 (.1.2)
Potri.004G087600
[exp]
162 / 1e-40 AT5G16720 281 / 2e-82 Protein of unknown function, DUF593 (.1)
Potri.017G129200
[exp]
154 / 4e-38 AT5G16720 286 / 2e-84 Protein of unknown function, DUF593 (.1)
Potri.008G132200
[exp]
147 / 4e-36 AT1G70750 288 / 1e-84 Protein of unknown function, DUF593 (.1)
Potri.010G109900
[exp]
141 / 5e-34 AT1G70750 277 / 2e-80 Protein of unknown function, DUF593 (.1)
Potri.012G073400
[exp]
139 / 7e-34 AT1G74830 390 / 2e-129 Protein of unknown function, DUF593 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10006566
[exp]
289 / 1e-83 AT1G08800 246 / 5e-68 Protein of unknown function, DUF593 (.1.2)
Lus10005527
[exp]
268 / 2e-76 AT1G08800 242 / 5e-67 Protein of unknown function, DUF593 (.1.2)
Lus10024869
[exp]
190 / 5e-50 AT1G08800 191 / 4e-51 Protein of unknown function, DUF593 (.1.2)
Lus10018782
[exp]
189 / 1e-49 AT1G08800 189 / 2e-50 Protein of unknown function, DUF593 (.1.2)
Lus10033854
[exp]
173 / 1e-44 AT2G30690 213 / 6e-59 Protein of unknown function, DUF593 (.1)
Lus10014743
[exp]
170 / 6e-44 AT2G30690 204 / 3e-56 Protein of unknown function, DUF593 (.1)
Lus10004050
[exp]
146 / 9e-36 AT5G16720 290 / 7e-87 Protein of unknown function, DUF593 (.1)
Lus10002289
[exp]
137 / 7e-33 AT5G16720 293 / 6e-88 Protein of unknown function, DUF593 (.1)
Lus10036656
[exp]
116 / 1e-26 AT1G74830 434 / 1e-146 Protein of unknown function, DUF593 (.1)
Lus10033123
[exp]
115 / 3e-26 AT1G74830 430 / 4e-145 Protein of unknown function, DUF593 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF04576 Zein-binding Zein-binding
Representative CDS sequence
>Potri.013G043400.2 pacid=42811050 polypeptide=Potri.013G043400.2.p locus=Potri.013G043400 ID=Potri.013G043400.2.v4.1 annot-version=v4.1
ATGGCTGCCAGTGGGGTTTCATCTATTCAATCAAAGAAAAAGTCCTGGAGTATCAGCACTGCTTTGGCATCTGCTGTTTTGGAATGGTTGCTAATGTGTA
TGCTCTTCACCAATGCTATTTTCTCGTATTTAATTACAAGATTTGCATGTCAATGGGAATTGCAAACCCCATGTTTGCTATGCTCAAGACTGGATCATAT
TCTGGGCTCTAGAAAGTTGAGATATTATTGGGATTTGATCTGTGGCAATCATAAGTTGGAGGTCTCATCCCTGGTTTTCTGTCACGCTCACAACAATCTC
GTCGATGTCCATGGAATGTGTGAAAATTGCCTTTTCTCATTTGCCACCACCAATAAGTCCAATGCTGAAACATATAGATTGTTGGTTGGGAAGTTGGGGG
AGGATTCTAGCTTTGGTTTAGATCAGGACCCACTACTTGATGATCATAGTTCAGTTGCGAGACTATGTTCTTGTTGCAATGAACCATGGATTCCGAGAGG
ATATTTCCAAAACTTGATGCGGGCTGCATCAGTTGGTTCCGGGGCTGCTAATCTTGATGTCCCTTTGTCAGGTACCATTAAACATGATTGCAGTAACATA
AAGAAAAGTAAAAGATCTACATCCATCAGAAGCACCCGTCGAAAAACTACTGGGTTTGATCCTTTATCTCATGTAGGTTACACTGAACTCAAGTTCATTT
CTGATACTGAATCTGAAGTCATGTTTTTTTCTGATGATGGTGGTGCAAATGCTGCAACTCGCAAAGATATTTCAGTTGGATACGTGCAGCCAGAGCCTCG
CACTATCATATTAGTCGATGATTCTGCCTCAGAGAAACTGATTGATCCGGTCTCTGCACCTGAGCCATCAATTTTGACCTCGAAGGTGCTATCAGATGTT
ATCCAGTCCCACAACGTTACAGCAACAGCATCTGCATTTCCTATTGGGCATGATTTGGAAGAGCTTAAATGGCAACAAGCTGATTGGAAGGCTAATTCCT
TTGCACTTCCTGAGTTCGTTTCCCATGATAAACTTCCTCCATCATCAATTTCCAGAGACAGCCCTCGAAAAGCGTCAAAAGGAAGAAAGCAAATTTCTCT
AGACGAAGTTCCTCGATCATCATATGTCAAAGAAACTCCATTGGAAGCATCGAAAGAAAGCAAGATTATTTCGGTGAACATTGTTCATCCATCATCAAAA
TGGAGAGGGAATCCTGTCAAAATTTCAGATGAGAGAAAGCTTATTTCTCTTGCTGACTTCCTTCCATCATCAAATGGAGCAGAAACTCCTGTTCAAGGAT
TAAAAGAGAGATGTATAACCAGAGAAGTGGAAGATTGGCAGGCATATGTGATGGATTGTGAGGATCTCTGCAAGGCAGAAAGTCAGCCAGCTAGAAGAAC
TGAAACAGCTTCAGAAATAAACCCTCTTTCAGGTGAAAATGGTCAGCAATTTGCAAACTTATTGGATCTCAGTGATGCTTATAAGCTATCTGTTGGCAAT
AGGGGAAGGCAGTTGTCTGGTGTTCTTGCTGAACAAAGGACTGGGAAGGATTCTTCAAGATTTAGCGAAGAGTTGAAGCTTTTACTTTCACAGCTCTCCT
CTTCTAGAGACCAGTCAATGAATGCTATCAGTCCTAGAGTTCCTATCAGTCCTAGAGTCCCTGTTAGTCCTAAATTATCATCAAACAGTGATGAATTAAG
GATTTCTGATGCTTCTAGTGTCTTAGGAATGCATATTCTTCAAAAGCGAATCACACTTGAAAGAAATGAATCTTGTCTATCTTTGGATGAAAGTATTGTC
AGTGAAATTGAAGGTGAAAGTGCCGTTGATCGGTTAAAACGGCAGGTTGAGCATGATAAAAAACTGCTCAGTGCATTGTACAAGGAATTGGAGGAAGAAA
GGAATGCATCCACAATTGCTGCAAATCAAGCTATGGCCATGATTACTAGACTACAGGAGGAGAAGGCAACACTCCACATGGAAGCTCTGCAATACCTAAG
AATGATGGAGGAGCAATCTGAGTATGATACGGAGGCCCTGCAAAAAAAGAATGACCTTCTCACAGAGAAGGAGAAAGAGGTCCAAGATCTAGAAGAGGAG
CTTGAGTTTTATAGGAGTAAGTTCCCCGATGAATCAATCTTTCAGACACCGACTTCTGATAGAAAGGAAACAGGTTCAAGTGCGGATCACTCAGAAGCTG
GCTGGATAGAAGATAGCACAACCACAAATAGAAACTCGGTTACAGAAAAACCTAATGTCTGCCATAAAGTTGAAGCGACGAATATGTCACTTGGGGATAA
GAATATCGTTACTGTGAATAGTTCTTTGTTAGAGTTTGAAGATGAAAGGTCATATATTACACAAAGTTTGAAGAGGTTGAAAAGGAAGCTTTATCTGTTA
TCTAACAATGGGCTAAGCTTAGACTTGATCAACGGTGAACATTCTGAAGGAGAAAAAGGAAATGACTTGAGGGAGCTGAATAACAAAGTGGGTGTTGAAC
AGAACATTGGGGCAGAAAAGAAAGAGTTATCAATGACTGATAGAAGAAGCGAGCCTGTTCAAGGACATGTTTCTGCACTTGAGAAATTTTTCATTGGTAA
CGAGAACAATGAGGTTTTTTATAGTGGGGAAAGCTCTCCTATGCCCCCTCGAGAAATTGATCTAGACTCTCTCGTAAATGAAGTTTCTGATATAAGTGAG
AGGTTGGAAGCTCTTGAGGCAGACCGGAATTTCCTTGAACACGTCGTTAACTCAATCAGATATGATGAGGAAGGGCTTCATTTTATTAAGGAGATAGCTT
CTCACCTGAAAGAAATACGAAAGATCGGGATACCGAAAAGGGAGCAGGAGCAAATCACTGCTTAA
AA sequence
>Potri.013G043400.2 pacid=42811050 polypeptide=Potri.013G043400.2.p locus=Potri.013G043400 ID=Potri.013G043400.2.v4.1 annot-version=v4.1
MAASGVSSIQSKKKSWSISTALASAVLEWLLMCMLFTNAIFSYLITRFACQWELQTPCLLCSRLDHILGSRKLRYYWDLICGNHKLEVSSLVFCHAHNNL
VDVHGMCENCLFSFATTNKSNAETYRLLVGKLGEDSSFGLDQDPLLDDHSSVARLCSCCNEPWIPRGYFQNLMRAASVGSGAANLDVPLSGTIKHDCSNI
KKSKRSTSIRSTRRKTTGFDPLSHVGYTELKFISDTESEVMFFSDDGGANAATRKDISVGYVQPEPRTIILVDDSASEKLIDPVSAPEPSILTSKVLSDV
IQSHNVTATASAFPIGHDLEELKWQQADWKANSFALPEFVSHDKLPPSSISRDSPRKASKGRKQISLDEVPRSSYVKETPLEASKESKIISVNIVHPSSK
WRGNPVKISDERKLISLADFLPSSNGAETPVQGLKERCITREVEDWQAYVMDCEDLCKAESQPARRTETASEINPLSGENGQQFANLLDLSDAYKLSVGN
RGRQLSGVLAEQRTGKDSSRFSEELKLLLSQLSSSRDQSMNAISPRVPISPRVPVSPKLSSNSDELRISDASSVLGMHILQKRITLERNESCLSLDESIV
SEIEGESAVDRLKRQVEHDKKLLSALYKELEEERNASTIAANQAMAMITRLQEEKATLHMEALQYLRMMEEQSEYDTEALQKKNDLLTEKEKEVQDLEEE
LEFYRSKFPDESIFQTPTSDRKETGSSADHSEAGWIEDSTTTNRNSVTEKPNVCHKVEATNMSLGDKNIVTVNSSLLEFEDERSYITQSLKRLKRKLYLL
SNNGLSLDLINGEHSEGEKGNDLRELNNKVGVEQNIGAEKKELSMTDRRSEPVQGHVSALEKFFIGNENNEVFYSGESSPMPPREIDLDSLVNEVSDISE
RLEALEADRNFLEHVVNSIRYDEEGLHFIKEIASHLKEIRKIGIPKREQEQITA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G08800 Protein of unknown function, D... Potri.013G043400
[exp]
0 1

Potri.013G043400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.