Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	PURE.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37690 867 / 0 phosphoribosylaminoimidazole carboxylase, putative / AIR carboxylase, putative (.1) AT2G05140 216 / 5e-67 phosphoribosylaminoimidazole carboxylase family protein / AIR carboxylase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G012300 [exp] 1101 / 0 AT2G37690 885 / 0.0 phosphoribosylaminoimidazole carboxylase, putative / AIR carboxylase, putative (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042546 [exp] 905 / 0 AT2G37690 907 / 0.0 phosphoribosylaminoimidazole carboxylase, putative / AIR carboxylase, putative (.1) Lus10022004 [exp] 894 / 0 AT2G37690 892 / 0.0 phosphoribosylaminoimidazole carboxylase, putative / AIR carboxylase, putative (.1) Lus10005526 [exp] 283 / 8e-89 AT2G37690 271 / 2e-84 phosphoribosylaminoimidazole carboxylase, putative / AIR carboxylase, putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0224 [poplar] [flax] DHQS PF00731 [poplar] [flax] AIRC AIR carboxylase CL0179 [poplar] [flax] ATP-grasp PF13535 [poplar] [flax] ATP-grasp_4 ATP-grasp domain
Representative CDS sequence Show only first row Show all	>Potri.013G043500.1 pacid=42811742 polypeptide=Potri.013G043500.1.p locus=Potri.013G043500 ID=Potri.013G043500.1.v4.1 annot-version=v4.1 ATGATGCTTCTGCAACAGACAACCTCAGTGCCAAGACTTGTAGTGTTTTCAAAATCTGATTTTTGTTTCAAGCCTTGTTCTTCCTCTTCAACAAGATTAT CTTTCATGGACAAGCACACCAACTCCTCTTCTTCTTCCTCTTCGCTAAAACAGTCTCTCAAACAATACCAAAGTCCAGTCGTGGCTTGTCAAGCATCAAC TGACACTAACGATACTTCTTTCAGGAAAGATTACTTGCCAATTCATGGAGTGTCCGAGGTGATTGTTGGTGTATTGGGAGGTGGGCAATTGAGCCGTATG TTATGCCAAGCAGCTTCAGAAATAGCTATTAAAGTCATGGTTTTGGACCCACTTGTGAATTGTCCAGCGAGTTCGATTGCATATGATCATATGGTTGGAA GCTTTGATGATAGTGCAACGGTTCAGGAATTCGCAAAAAGATGTGCAGTGTTGACTGTGGATATTGAACATGTTGATGTTGCTACGATGGAGAAGCTTGA GCAGCAAGGAGTTGATTGCCAACCAAAAGCTTCTACTATTAGAATTATCCAAGATAAATATCTCCAGAAGGTTCATTTTTCTCAGCATGGGATTCCCCTT CCTGATTTTATGCAGATTGATGATCTAGAAGGTGCCAAGAGGGCAGGTGACTTATTTGGCTATCCTCTAATGCTCAAGAGCAGAAGGCTAGCTTATGATG GGCGTGGGAATGCAGTTGCTAAGAATGAAGTGGAGCTTACTTCTGCAGTAAATGCTCTTGGAGGATTTGCTCGTGGTTTATATGTTGAGAAATGGACTCC CTTTGTAAAGGAGCTAGCTGTCATTGTGGGTAGAGGAAGAGACAATTCCATCTCCTGTTACCCTGTTGTTGAAACTATCCACAAAGAAAACATTTGTCAC ATAGTTAAGGCTCCTGCTCATGTACCATGGAAGATCAGAAAACTTGCCATTGATGTTGCACATAAAGCTGTTAGCTCATTAGAAGGTGCTGGTGTGTTTG CAGTGGAGTTGTTTTTGACAAAGGATGGTCAGATTTTACTGAATGAAGTAGCTCCTAGACCTCATAATAGTGGTCATCACACAATTGAGTCCTGCTACAC CTCACAATTCGAACAGCATTTGAGAGCTGTTCTGGGTCTTCCACTTGGTGATCCATCAATGAAGACTCCAGCTGCTATCATGTACAATCTACTGGGTGAA GACGAGGGTGAGCCTGGTTTTCAGTTAGCTCATCAGCTGATTGGAAGGGCATTGAACATGCAAGGGGCTGCTGTTCATTGGTACGAAAAACCAGAAATGC GAAAGCAACGAAAGATGGGTCATATCACTATTGTTGGCTCTTCTGCGGGCATAGTAGAAGCACAGTTAAAATCAGTGCTGAAGGAAGAAGGTTCCGAGAC TCAGACCGCAGTTACGCCATGTGTTGGGATCATTATGGGCTCTGATTCAGATCTTCCTATTATGAAGGATGCTGCGAGGATTTTGAATACGTTTGGTGTG CCTCATGAGGTGAGAATAGTATCAGCACATCGAACTCCTGAAATGATGTTCTCTTATGCCCTGTCTGCTCGGGACCGAGGCATTCAAATCATCATTGCCG GTGCTGGTGGCGCAGCTCACTTGCCAGGTATGGTAGCTTCACTAACCCCCTTGCCTGTTATTGGTGTCCCTGTGCGTGCTTCTGCTTTGGATGGAATGGA TTCGCTCTTATCAATTGTACAGATGCCAAGGGGAGTCCCTGTTGCAACTGTGGCAATTAATAATGCCACAAATGCAGGTTTGCTAGCTGTAAGGATGTTG GGTGTCGGTGATGCTGACCTTTTGGCAAGAATGAGCCAGTATCAGGAAGACACAAGGGACGATGTCTTGAAGAAGGCAGAAAAACTACAAACTGATGGTT GGGAATCATATTTGAATCCTTGA
AA sequence Show only first row Show all	>Potri.013G043500.1 pacid=42811742 polypeptide=Potri.013G043500.1.p locus=Potri.013G043500 ID=Potri.013G043500.1.v4.1 annot-version=v4.1 MMLLQQTTSVPRLVVFSKSDFCFKPCSSSSTRLSFMDKHTNSSSSSSSLKQSLKQYQSPVVACQASTDTNDTSFRKDYLPIHGVSEVIVGVLGGGQLSRM LCQAASEIAIKVMVLDPLVNCPASSIAYDHMVGSFDDSATVQEFAKRCAVLTVDIEHVDVATMEKLEQQGVDCQPKASTIRIIQDKYLQKVHFSQHGIPL PDFMQIDDLEGAKRAGDLFGYPLMLKSRRLAYDGRGNAVAKNEVELTSAVNALGGFARGLYVEKWTPFVKELAVIVGRGRDNSISCYPVVETIHKENICH IVKAPAHVPWKIRKLAIDVAHKAVSSLEGAGVFAVELFLTKDGQILLNEVAPRPHNSGHHTIESCYTSQFEQHLRAVLGLPLGDPSMKTPAAIMYNLLGE DEGEPGFQLAHQLIGRALNMQGAAVHWYEKPEMRKQRKMGHITIVGSSAGIVEAQLKSVLKEEGSETQTAVTPCVGIIMGSDSDLPIMKDAARILNTFGV PHEVRIVSAHRTPEMMFSYALSARDRGIQIIIAGAGGAAHLPGMVASLTPLPVIGVPVRASALDGMDSLLSIVQMPRGVPVATVAINNATNAGLLAVRML GVGDADLLARMSQYQEDTRDDVLKKAEKLQTDGWESYLNP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G37690			phosphoribosylaminoimidazole c...		Potri.013G043500 [exp]	0	1	PURE.1
AT2G18900			Transducin/WD40 repeat-like su...		Potri.006G166500 [exp]	2.64	0.8531
AT3G20730			Tetratricopeptide repeat (TPR)...		Potri.007G068900 [exp]	4.24	0.8509
AT3G55200		AtSAP130a	Arabidopsis thaliana spliceoso...		Potri.008G048900 [exp]	6.48	0.8044
AT4G01860			Transducin family protein / WD...		Potri.002G189400 [exp]	6.92	0.8318
AT3G02280			Flavodoxin family protein (.1)		Potri.004G101100 [exp]	9.21	0.8017
AT1G24706		EMB2793, AtTHO2	EMBRYO DEFECTIVE 2793, THO2 (....		Potri.013G085000 [exp]	9.79	0.8416
AT5G46050		ATPTR3, PTR3	ARABIDOPSIS THALIANA PEPTIDE T...		Potri.002G258832 [exp]	12.64	0.7501
AT3G55200		AtSAP130a	Arabidopsis thaliana spliceoso...		Potri.010G212100 [exp]	15.00	0.8263
AT2G11000		ATMAK10	MAK10 homologue (.1.2)		Potri.006G065000 [exp]	16.43	0.7857	Pt-ATMAK10.3
AT5G59980			Polymerase/histidinol phosphat...		Potri.009G025800 [exp]	19.79	0.8226

Compare expression of checked genes

Potri.013G043500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.