Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06135 40 / 3e-05 unknown protein AT1G06137 37 / 0.0003 unknown protein AT2G31345 37 / 0.0004 unknown protein AT2G31335 36 / 0.0005 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G013000 [exp] 181 / 1e-60 AT2G31335 / unknown protein Potri.019G012400 [exp] 174 / 1e-57 AT2G31335 / unknown protein Potri.019G012700 [exp] 172 / 3e-57 AT2G31335 / unknown protein Potri.019G012601 [exp] 157 / 3e-51 AT2G31335 / unknown protein Potri.019G012900 [exp] 157 / 4e-51 AT2G31335 / unknown protein Potri.019G012702 [exp] 154 / 5e-50 AT2G31335 / unknown protein Potri.019G012603 [exp] 129 / 2e-40 AT2G31335 / unknown protein Potri.010G075133 [exp] 82 / 1e-21 AT2G31335 / unknown protein Potri.008G163000 [exp] 77 / 1e-19 AT2G31335 40 / 1e-05 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005525 [exp] 76 / 6e-19 ND 40 / 1e-05 Lus10006567 [exp] 76 / 1e-18 ND 35 / 0.001 Lus10041164 [exp] 63 / 1e-13 ND 34 / 0.002 Lus10024873 [exp] 60 / 1e-12 ND 37 / 2e-04 Lus10024872 [exp] 57 / 1e-11 ND 39 / 3e-05 Lus10041163 [exp] 51 / 2e-09 ND 34 / 0.002 Lus10000703 [exp] 48 / 5e-08 AT1G06135 44 / 3e-07 unknown protein Lus10014739 [exp] 44 / 2e-06 ND 40 / 2e-05
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.013G043600.1 pacid=42810913 polypeptide=Potri.013G043600.1.p locus=Potri.013G043600 ID=Potri.013G043600.1.v4.1 annot-version=v4.1 ATGGGTTCTCAAAGAAGAAATCAGTGCTTAACGGTAATGATTTTTGTTACCATTGTTCTTGGATCATGTTCTCAGCAAGTATTGGCAGCTAGGCCATTGA AAGGAGAACGGTGGTCGGAGAAGATTGTTGGAAATATCCAGTCTCTCCAAAGGGGTCCGGTTCCACCATCTGGGGGGTCTCCATGCACCCATATTCCTGG CCGTGGTAGTGGCAAATGCTCCTTGGGTGAAATGAATTTTGCTGGCCATACTGTTGCTCTTGCACCACCTGCCTTTCCTGACGCCATCATGAACTTCGGC GCCGCAGCTTCTACCACCAGTGGAACTCATAAACAAGATTCAAGCTCTTGA
AA sequence Show only first row Show all	>Potri.013G043600.1 pacid=42810913 polypeptide=Potri.013G043600.1.p locus=Potri.013G043600 ID=Potri.013G043600.1.v4.1 annot-version=v4.1 MGSQRRNQCLTVMIFVTIVLGSCSQQVLAARPLKGERWSEKIVGNIQSLQRGPVPPSGGSPCTHIPGRGSGKCSLGEMNFAGHTVALAPPAFPDAIMNFG AAASTTSGTHKQDSSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G06135			unknown protein		Potri.013G043600 [exp]	0	1
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Potri.003G098900 [exp]	6.08	0.8738
AT5G37490			ARM repeat superfamily protein...		Potri.010G103100 [exp]	14.00	0.8382
AT3G59080			Eukaryotic aspartyl protease f...		Potri.005G204600 [exp]	14.07	0.8048
AT5G06740			Concanavalin A-like lectin pro...		Potri.006G193000 [exp]	16.91	0.8605
AT2G38790			unknown protein		Potri.008G025200 [exp]	30.75	0.8208
AT4G35160			O-methyltransferase family pro...		Potri.004G050400 [exp]	32.71	0.8232	FOMT2,Pt-OOMT2.13
AT2G23770			protein kinase family protein ...		Potri.014G040000 [exp]	41.71	0.7517
AT2G38790			unknown protein		Potri.008G025100 [exp]	45.50	0.8046
AT1G76490		HMGR1, HMG1, At...	3-HYDROXY-3-METHYLGLUTARYL COA...		Potri.009G169900 [exp]	58.58	0.7980
AT2G42360			RING/U-box superfamily protein...		Potri.019G091400 [exp]	59.24	0.8185

Compare expression of checked genes

Potri.013G043600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.