Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-GIF1.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G28640 134 / 6e-39 ATGIF1, GIF1, AN3 ARABIDOPSIS GRF1-INTERACTING FACTOR 1, ANGUSTIFOLIA 3, SSXT family protein (.1) AT4G00850 97 / 2e-24 GIF3 GRF1-interacting factor 3 (.1) AT1G01160 88 / 2e-21 GIF2 GRF1-interacting factor 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G013100 [exp] 237 / 2e-79 AT5G28640 135 / 1e-39 ARABIDOPSIS GRF1-INTERACTING FACTOR 1, ANGUSTIFOLIA 3, SSXT family protein (.1) Potri.014G103900 [exp] 103 / 2e-27 AT4G00850 132 / 3e-38 GRF1-interacting factor 3 (.1) Potri.002G177600 [exp] 99 / 2e-25 AT4G00850 152 / 4e-46 GRF1-interacting factor 3 (.1) Potri.012G023100 [exp] 82 / 1e-19 AT4G00850 90 / 6e-23 GRF1-interacting factor 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006568 [exp] 138 / 2e-40 AT5G28640 145 / 4e-43 ARABIDOPSIS GRF1-INTERACTING FACTOR 1, ANGUSTIFOLIA 3, SSXT family protein (.1) Lus10005524 [exp] 137 / 2e-40 AT5G28640 152 / 2e-46 ARABIDOPSIS GRF1-INTERACTING FACTOR 1, ANGUSTIFOLIA 3, SSXT family protein (.1) Lus10032892 [exp] 105 / 5e-28 AT4G00850 185 / 3e-59 GRF1-interacting factor 3 (.1) Lus10027132 [exp] 101 / 3e-27 AT4G00850 148 / 7e-46 GRF1-interacting factor 3 (.1) Lus10008847 [exp] 55 / 2e-10 AT1G01160 66 / 2e-15 GRF1-interacting factor 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05030 [poplar] [flax] SSXT SSXT protein (N-terminal region)
Representative CDS sequence Show only first row Show all	>Potri.013G043700.1 pacid=42811607 polypeptide=Potri.013G043700.1.p locus=Potri.013G043700 ID=Potri.013G043700.1.v4.1 annot-version=v4.1 ATGCAACAGCACCTGATGCAGATGCAGCCCATGATGGCAGCCTATTACCCCAGCAACGTCACTACTGATCATATTCAACAGTATCTGGATGAAAACAAGT CATTGATTTTGAAGATTGTTGAGAGCCAGAATTTAGGGAAGCTCAGTGAGTGTGCAGAGAACCAAGCAAGACTACAGCGGAACCTGATGTACTTGGCTGC AATTGCTGATTCTCAGCCCCCGCCACCTACCATGCATGCCCAGTTCCCTTCCAGCAGCATTATGCAGCCAGGAGCACATTACATGCAGCACCAACAAGCT CAACAGATGACACCACAAGCCCTTATGGCCGCTCGCTCTTCCATGCTGCAGTATGCTCAACAGCCATTCTCAGCTCTGCAACAACAGCAAGTGCAAGCCT TGCACAGCCAGCTTGGCATGAGTTCTGGTGGAAGCGCAGGACTTCATATGCTGCAAAATGAGGCCATCATGGCAGGAGGCAGTGGAGCACTTGGTGTTGG AGGATTTCCTGATTTTGGAATCGATGCTGCTGGTAGAGGAATTGCAAGTGGGAGCAAGCAAGATATTCGGAGTGCAGGATCTAGTGAAGGTCGAGGGGGG AGCTCTGGAGGCCATGGTGGTGATGGAGGTGAAACCCTTTACTTGAAATCTGCAGATGATGGGAATTGA
AA sequence Show only first row Show all	>Potri.013G043700.1 pacid=42811607 polypeptide=Potri.013G043700.1.p locus=Potri.013G043700 ID=Potri.013G043700.1.v4.1 annot-version=v4.1 MQQHLMQMQPMMAAYYPSNVTTDHIQQYLDENKSLILKIVESQNLGKLSECAENQARLQRNLMYLAAIADSQPPPPTMHAQFPSSSIMQPGAHYMQHQQA QQMTPQALMAARSSMLQYAQQPFSALQQQQVQALHSQLGMSSGGSAGLHMLQNEAIMAGGSGALGVGGFPDFGIDAAGRGIASGSKQDIRSAGSSEGRGG SSGGHGGDGGETLYLKSADDGN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G28640		ATGIF1, GIF1, A...	ARABIDOPSIS GRF1-INTERACTING F...		Potri.013G043700 [exp]	0	1	Pt-GIF1.2
AT5G13020		AtEML3, ACK1	EMSY-like 3, Emsy N Terminus (...		Potri.009G022900 [exp]	12.76	0.7706
AT4G06536			SPla/RYanodine receptor (SPRY)...		Potri.002G123800 [exp]	18.97	0.7106
AT2G42850		CYP718	"cytochrome P450, family 718",...		Potri.001G425675 [exp]	20.34	0.7292
AT4G33550			Bifunctional inhibitor/lipid-t...		Potri.003G084000 [exp]	24.65	0.6910
AT4G30520		SARK	SENESCENCE-ASSOCIATED RECEPTOR...		Potri.018G101300 [exp]	38.47	0.7074
AT5G41620			unknown protein		Potri.014G093400 [exp]	42.08	0.6869
AT2G01570	GRAS	RGA1	REPRESSOR OF GA1-3 1, REPRESSO...		Potri.010G110700 [exp]	47.95	0.7050	GAI.1
					Potri.006G120901 [exp]	50.40	0.7047
AT1G04520		PDLP2	plasmodesmata-located protein ...		Potri.002G257300 [exp]	53.57	0.7027
AT4G03420			Protein of unknown function (D...		Potri.019G103000 [exp]	56.25	0.7027

Compare expression of checked genes

Potri.013G043700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.