Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G54560 2512 / 0 PCR1, ATXIE, XIE MYOSIN XI E, Myosin family protein with Dil domain (.1) AT1G08730 2480 / 0 PCR43, ATXIC, XIC MYOSIN XI C, Myosin family protein with Dil domain (.1) AT5G20490 2249 / 0 XI-17, ATXIK, XIK MYOSIN XI-17, MYOSIN XI K, Myosin family protein with Dil domain (.1.2) AT1G17580 2059 / 0 XI-1, ATMYA1, MYA1 MYOSIN XI 1, ARABIDOPSIS MYOSIN 1, myosin 1 (.1) AT1G04160 1878 / 0 XI-B, XI-8, ATXIB, XIB MYOSIN XI-8, ARABIDOPSIS THALIANA MYOSIN XI B, myosin XI B (.1) AT5G43900 1863 / 0 XI-6, XI-2, ATMYA2, MYA2 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3) AT2G31900 1855 / 0 ATMYO5, PCR11, ATXIF, XIF MYOSIN XI F, MYOSIN 5, myosin-like protein XIF (.1) AT4G28710 1846 / 0 ATXIH, XIH MYOSIN XI H, Myosin family protein with Dil domain (.1) AT2G20290 1653 / 0 ATXIG, XIG MYOSIN XI G, myosin-like protein XIG (.1) AT4G33200 1603 / 0 XI-15, ATXI-I, XI-I MYOSIN XI-15, MYOSIN XI I, myosin, putative (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G013800 [exp] 2814 / 0 AT1G54560 2616 / 0.0 MYOSIN XI E, Myosin family protein with Dil domain (.1) Potri.006G145700 [exp] 2307 / 0 AT5G20490 2580 / 0.0 MYOSIN XI-17, MYOSIN XI K, Myosin family protein with Dil domain (.1.2) Potri.001G199200 [exp] 2299 / 0 AT5G20490 2448 / 0.0 MYOSIN XI-17, MYOSIN XI K, Myosin family protein with Dil domain (.1.2) Potri.002G254300 [exp] 1980 / 0 AT1G04160 2412 / 0.0 MYOSIN XI-8, ARABIDOPSIS THALIANA MYOSIN XI B, myosin XI B (.1) Potri.009G025300 [exp] 1976 / 0 AT2G31900 2363 / 0.0 MYOSIN XI F, MYOSIN 5, myosin-like protein XIF (.1) Potri.001G233100 [exp] 1961 / 0 AT2G31900 2385 / 0.0 MYOSIN XI F, MYOSIN 5, myosin-like protein XIF (.1) Potri.008G174500 [exp] 1878 / 0 AT5G43900 2206 / 0.0 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3) Potri.006G220000 [exp] 1627 / 0 AT4G33200 2352 / 0.0 MYOSIN XI-15, MYOSIN XI I, myosin, putative (.1.2.3) Potri.002G041800 [exp] 1436 / 0 AT1G08730 1447 / 0.0 MYOSIN XI C, Myosin family protein with Dil domain (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005521 [exp] 2603 / 0 AT1G54560 2686 / 0.0 MYOSIN XI E, Myosin family protein with Dil domain (.1) Lus10003315 [exp] 2234 / 0 AT5G20490 2479 / 0.0 MYOSIN XI-17, MYOSIN XI K, Myosin family protein with Dil domain (.1.2) Lus10021570 [exp] 2204 / 0 AT5G20490 2587 / 0.0 MYOSIN XI-17, MYOSIN XI K, Myosin family protein with Dil domain (.1.2) Lus10017160 [exp] 2108 / 0 AT5G20490 2476 / 0.0 MYOSIN XI-17, MYOSIN XI K, Myosin family protein with Dil domain (.1.2) Lus10022850 [exp] 1964 / 0 AT5G43900 2380 / 0.0 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3) Lus10023696 [exp] 1618 / 0 AT5G43900 1841 / 0.0 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3) Lus10032597 [exp] 1597 / 0 AT5G43900 1925 / 0.0 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3) Lus10009791 [exp] 1489 / 0 AT1G04160 2103 / 0.0 MYOSIN XI-8, ARABIDOPSIS THALIANA MYOSIN XI B, myosin XI B (.1) Lus10014753 [exp] 1249 / 0 AT3G58160 1289 / 0.0 MYOSIN XI-16, MYOSIN A3, MYOSIN XI J, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10043153 [exp] 993 / 0 AT5G43900 1250 / 0.0 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00063 [poplar] [flax] Myosin_head Myosin head (motor domain) CL0220 [poplar] [flax] EF_hand PF00612 [poplar] [flax] IQ IQ calmodulin-binding motif CL0220 [poplar] [flax] PF01843 [poplar] [flax] DIL DIL domain CL0010 [poplar] [flax] SH3 PF02736 [poplar] [flax] Myosin_N Myosin N-terminal SH3-like domain
Representative CDS sequence Show only first row Show all	>Potri.013G043900.1 pacid=42812288 polypeptide=Potri.013G043900.1.p locus=Potri.013G043900 ID=Potri.013G043900.1.v4.1 annot-version=v4.1 ATGGGAAGTACGGAGAATATAATTGTAGGTTCTGAAGTTTGGGTTGAAGACCCTCAGTTGGCTTGGCTTGATGGAAAGGTATCAAAGATTACAGGGCAGG ATGCGGAGATCGAGACTTCAAACGGAAAGAAGGTCACTGCTAAATTATCAAAAATATATCCGAAGGATATGGAAGCTCCTGCTGGTGGAGTTGATGACAT GACAAAGCTTTCTTACTTGCATGAGCCTGGAGTTCTGGAGAATTTGAAAACGAGATACGAACTGAATGAGATCTATACGTATACCGGAAATATTCTTATT GCCATTAATCCATTTCAAAGACTGCCTCATCTCTATGATGGCCACATGATGCAACAATACAAGGGAGCACCATTTGGAGAGCTGAGTCCTCATGTTTTTG CGGTTGCTGATGTTGCATACAGGGAAATGATCAATGAAAGGAAAAGTAATTCCATTTTGGTCAGTGGTGAAAGTGGTGCAGGTAAAACTGAGACCACGAA AATGCTTATGAGGTACCTTGCATTTTTAGGAGGTCGAGCTGCCACGGAAGGACGAACCGTTGAACAACAAGTTCTTGAATCAAACCCAGTCCTTGAAGCA TTCGGGAATGCTAAAACTGTTAGAAATAACAATTCCAGCCGTTTTGGTAAATTTGTTGAGATCCAGTTTGACAAGCATGGAAGAATTTCTGGAGCTGCCA TCAGAACTTACCTTTTAGAGAGATCTCGTGTTTGCCAAGTTTCCAGTCCTGAGCGCAACTACCACTGTTTTTACCTTCTTTGTGCCGCACCACAGGAGGA AGTAGAGAAGTACAAGTTGGGGAGCCCAAAATCATTCCACTATCTTAACCAGACAAATTGCTTTGAACTGGCTGGTGTAAGTGATGCCCATGACTATCTT TCCACTAGAAGAGCTATGGATATTGTTGGAATAAGTGCGAAGGAGCAGGAAGCAATTTTCAGAGTCGTTGCTGCAGTCCTTCATATTGGAAATATTGATT TTTCCAAGGGAAAGGAAGTTGATTCATCCGTTCCTAAAGATGACCAAGCTAAATTCCATCTCAAAACAACAGCAGAGCTACTAATGTGTGATCCTGTAGC CCTGGAAGATGCATTATGTAAGCGTGTTATGATCACCCCTGAGGAGGTCATCAAGAGAAGTCTTGATCCTCAAAGTGCAGTCACTAGCAGGGATGGTTTA GCTAAGACGATTTATTCTCGTTTATTTGATTGGATAGTAGATAAGATTAATAACTCCATTGGACAAGATCCTAACTCAAAATCTCTGATTGGAGTCCTTG ACATCTACGGTTTTGAAAGCTTTAAGACGAATAGCTTTGAGCAGTTCTGCATTAATTTCACAAACGAGAAGTTGCAGCAGCATTTCAACCAGCACGTCTT CAAAATGGAACAAGAGGAATACACAAAAGAGCAGATTGATTGGAGCTATATTGAGTTTGTTGATAATCAAGATGTCTTGGATCTTCTTGAAAAGAAACCA GGAGGTATAATAGCTCTCCTTGATGAAGCTTGCATGTTTCCAAAGTCAACGCATGAAACATTTTCAAATAAGCTTTATCAGACATTTAAAGTTCACAAGC GTTTTATCAAGCCAAAACTGTCTCGCACAGATTTCACCATCGCTCATTATGCTGGAGAGGTCCAGTATCAATCGGACCATTTTTTGGACAAGAACAAAGA CTATGTGGTTCCTGAACATCAAGATTTGTTGAATGGTTCCAAATGTCCTTTCGTAGCAGGCCTGTTCCCTCGACTTCCAGAGGAGACAAGTAAATCTTCA AAGTTCTCTTCAATTGGTTCTCGTTTCAAGATACAACTACAGCAACTAATGGATACATTAAATTCTACTGAACCTCACTACATTAGATGTGTAAAGCCAA ACAATCTACTAAAACCTGCTGTATTTGAGAATATCAACATCATGCAGCAATTGCGTTGCGGTGGTGTTTTAGAAGCAATTCGAATAAGTATGGCTGGATA TCCTACTCGCCGCCCTTTCTTTGAATTCATAAATCGATTTGGACTTCTTGCCCCAGAGGCTTGGGAAGGAAGCTATGATGAAAAGACTGTTTGCAAAAAG ATTTTGGAAAAGAAGGGGCTTAAAGGGTTCCAGATAGGCAAAACAAAGGTTTTCTTGAGAGCTGGTCAGATGGCTGAATTGGATGCAAGGAGAGCAGAGG TACTCAACAACGCAGCAAAAACCATCCAGGGACGGATACGGACGCATTATGCTCGCAAACAGTTTATTGCATTGCGGAAGGCTACCATAGTGGTGCAATC ACTATGGAGAGGAAGGCTGGCTTGCAAAGTTTATGAAAGAATAAAGAGGGAGGCAGCTGCTAGAAAAATTCAGAAGCATATACGTAGATATGCAGCCAGA ACAGCCTACAAGAAACTTCATATATCTGCGCTTCTCTTGCAAACAGGTTTAAGGGCAATGGTTGCTCGCAAGGAATTCAGATTTAGGAAGCGAACTAAAG CTGCAACCATTATTCAGGCCCGATGGCACTGTCATAAAGCTGCTTCCTACTATAAGAGGCTGCAGAGAAGTGCAATTGTCACACAAACAGGATGGAGGTG TAGAGTTGCTAGGAGAGAGCTAAGGTTGCTCAAAATGGCTGCAAGAGACACAGGTGCACTACGAGAAGCCAAAGATAAGCTTGAAAAGCATGTAGAGGAA CTCACATGGCGTTTGCAGCTGGAAAAACGTTTAAGGACCGATTTGGAAGAAGCAAAAGCACAAGAAGTGGTGAAATTTCAGAATTCACTGGAAGAAATGA AAAACAAAATAGAAGAAGCCAATGCATTGATAATCAAGGAAAGGGAGGCTGCAAAGAAGGCTATTGATGACGCTCCTCCTGTAATTAAAGAAACTCAAGT ACTTGTTGAAGATACTAAGAAAATTGATTCTCTAACAGAAGAAGTAGAAAACCTAAAGACCACGTTAGATTCTGAGAAACAAAGAGCTGATGATACTGAG AAGAAATACAGTGAAGTAAAAGAGATTAGTGAAGAAAGGCGGAAGAAATTGGAAGAAACAGAGAAGAAGGTTCAACAACTCCAGGAATCCTTGCAAAGGC TAGAAGAGAAACTTAACAACCTAGAGTCAGAGAATAAAGTCCTGCGGCAACAGGCTCTGTCAATGACGCCCAACAAGTACCTCTCAGGACGCTCCAGATC AATTATGCAGAGGGCTGAGAGTCACATTCCAGTGGATGCTGCAAGAGCAAGTTTGGATATGCAAAGCCCTTCAATGAATCACAGGGAGCACTCTGAAGTA GATGATAAGCCACAAAAGTCATTAAATGAGAAACAACAGGAGAACCAGGAGTTGCTCATTCGTTGTGTTGCACAACACTTGGGATTTTCAGGGAACAGAC CTATCGCTGCGTGTATCATATACAAGTGCCTTTTGCAGTGGAGATCGTTTGAAGTTGAGAGAACCAGTGTGTTTGATCGGATCATTCAGACCATAGGCCA TGCAATTGAGACCCAGGATAACAATGATGTCTTGGCCTATTGGCTATCCAATGCCTCAACACTCCTCTTACTGCTCCAACGTACATTGAAAGCAAGTGGT GCAGCAGGAATGGCTCCACAACGTCGACGATCATCATCAGCTACTCTATTTGGAAGAATGACACAGAGTTTTCGTGGAGCTCCACAAGGAGTCAATCTAT CCTTAATCAATGGGGGCATTAATGGTGGAGTGGACACCTTGCGGCAAGTTGAAGCCAAGTATCCAGCTTTGCTTTTCAAGCAGCAGCTTACAGCATATGT AGAAAAAATTTATGGAATGATTCGGGATAATCTAAAGAAAGAAATCTCTCCTTTGCTTGGATTGTGCATCCAGGCACCAAGAACATCCAGAGCAAGTTTA GTGAAGGGGGCACGTTCAGTTGCCAATGCTGCAGCCCAGCAAGCCCTGATTGCTCACTGGCAAGGAATAGTGAAGAGCCTTGGAAGCTTCTTAAACACTT TGAAGTCAAATCATGTGCCGCCATTTTTAGTTCGTAAGGTGTTCACTCAGATATTTTCCTTCATCAATGTCCAACTATTCAACAGCCTTTTATTAAGAAG AGAATGCTGTTCATTTAGTAATGGTGAATATGTTAAAGCTGGGTTGGCAGAATTGGAACATTGGTGCTACAAAGCTACGGATGAGTATGCAGGTTCAGCC TGGGATGAGCTCAAGCATATTAGACAGGCTATCGGGTTTCTGGTCATTCATCAAAAGCCAAAGAAAACATTGGATGAAATAAGCCATGACCTGTGCCCAG TTCTAAGTATCCAGCAGCTATACCGAATCAGTACCATGTACTGGGACGACAAGTATGGCACACATAGTGTGTCGACGGATGTTATATCCAATATGAGGGT GTTGATGACAGAAGATTCAAATAATGCAGTTAGTAATTCTTTCCTGCTGGATGATGATTCAAGCATTCCATTTTCAGTTGATGACTTATCAAAGTCCATG GAACAAATTGACATCGCTGACATCGAACCACCACCTCTGATTCGTGAAAACTCTGGCTTTAGTTTCTTGCTGCCACGCTGTGATTAA
AA sequence Show only first row Show all	>Potri.013G043900.1 pacid=42812288 polypeptide=Potri.013G043900.1.p locus=Potri.013G043900 ID=Potri.013G043900.1.v4.1 annot-version=v4.1 MGSTENIIVGSEVWVEDPQLAWLDGKVSKITGQDAEIETSNGKKVTAKLSKIYPKDMEAPAGGVDDMTKLSYLHEPGVLENLKTRYELNEIYTYTGNILI AINPFQRLPHLYDGHMMQQYKGAPFGELSPHVFAVADVAYREMINERKSNSILVSGESGAGKTETTKMLMRYLAFLGGRAATEGRTVEQQVLESNPVLEA FGNAKTVRNNNSSRFGKFVEIQFDKHGRISGAAIRTYLLERSRVCQVSSPERNYHCFYLLCAAPQEEVEKYKLGSPKSFHYLNQTNCFELAGVSDAHDYL STRRAMDIVGISAKEQEAIFRVVAAVLHIGNIDFSKGKEVDSSVPKDDQAKFHLKTTAELLMCDPVALEDALCKRVMITPEEVIKRSLDPQSAVTSRDGL AKTIYSRLFDWIVDKINNSIGQDPNSKSLIGVLDIYGFESFKTNSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTKEQIDWSYIEFVDNQDVLDLLEKKP GGIIALLDEACMFPKSTHETFSNKLYQTFKVHKRFIKPKLSRTDFTIAHYAGEVQYQSDHFLDKNKDYVVPEHQDLLNGSKCPFVAGLFPRLPEETSKSS KFSSIGSRFKIQLQQLMDTLNSTEPHYIRCVKPNNLLKPAVFENINIMQQLRCGGVLEAIRISMAGYPTRRPFFEFINRFGLLAPEAWEGSYDEKTVCKK ILEKKGLKGFQIGKTKVFLRAGQMAELDARRAEVLNNAAKTIQGRIRTHYARKQFIALRKATIVVQSLWRGRLACKVYERIKREAAARKIQKHIRRYAAR TAYKKLHISALLLQTGLRAMVARKEFRFRKRTKAATIIQARWHCHKAASYYKRLQRSAIVTQTGWRCRVARRELRLLKMAARDTGALREAKDKLEKHVEE LTWRLQLEKRLRTDLEEAKAQEVVKFQNSLEEMKNKIEEANALIIKEREAAKKAIDDAPPVIKETQVLVEDTKKIDSLTEEVENLKTTLDSEKQRADDTE KKYSEVKEISEERRKKLEETEKKVQQLQESLQRLEEKLNNLESENKVLRQQALSMTPNKYLSGRSRSIMQRAESHIPVDAARASLDMQSPSMNHREHSEV DDKPQKSLNEKQQENQELLIRCVAQHLGFSGNRPIAACIIYKCLLQWRSFEVERTSVFDRIIQTIGHAIETQDNNDVLAYWLSNASTLLLLLQRTLKASG AAGMAPQRRRSSSATLFGRMTQSFRGAPQGVNLSLINGGINGGVDTLRQVEAKYPALLFKQQLTAYVEKIYGMIRDNLKKEISPLLGLCIQAPRTSRASL VKGARSVANAAAQQALIAHWQGIVKSLGSFLNTLKSNHVPPFLVRKVFTQIFSFINVQLFNSLLLRRECCSFSNGEYVKAGLAELEHWCYKATDEYAGSA WDELKHIRQAIGFLVIHQKPKKTLDEISHDLCPVLSIQQLYRISTMYWDDKYGTHSVSTDVISNMRVLMTEDSNNAVSNSFLLDDDSSIPFSVDDLSKSM EQIDIADIEPPPLIRENSGFSFLLPRCD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G54560		PCR1, ATXIE, XI...	MYOSIN XI E, Myosin family pro...		Potri.013G043900 [exp]	0	1
AT1G76690		OPR2, ATOPR2	ARABIDOPSIS 12-OXOPHYTODIENOAT...		Potri.013G102900 [exp]	1.41	0.7023
					Potri.003G010664 [exp]	20.85	0.6913
AT5G36110		CYP716A1	"cytochrome P450, family 716, ...		Potri.019G078600 [exp]	23.95	0.6931
AT1G47670			Transmembrane amino acid trans...		Potri.004G181000 [exp]	25.13	0.6699
AT5G39130			RmlC-like cupins superfamily p...		Potri.013G063200 [exp]	40.17	0.6739
AT4G11410			NAD(P)-binding Rossmann-fold s...		Potri.003G128901 [exp]	40.65	0.6562
AT5G50140			Ankyrin repeat family protein ...		Potri.001G187600 [exp]	43.86	0.5720
AT4G37280			MRG family protein (.1)		Potri.002G122500 [exp]	46.98	0.6383
AT4G10490			2-oxoglutarate (2OG) and Fe(II...		Potri.014G106700 [exp]	47.95	0.6383
AT5G39130			RmlC-like cupins superfamily p...		Potri.013G063101 [exp]	49.20	0.6698

Compare expression of checked genes

Potri.013G043900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.