Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G54650 376 / 2e-131 Methyltransferase family protein (.1.2) AT2G26200 137 / 5e-36 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G225600 [exp] 117 / 3e-29 AT2G26200 739 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006576 [exp] 423 / 1e-149 AT1G54650 381 / 1e-133 Methyltransferase family protein (.1.2) Lus10005515 [exp] 241 / 6e-78 AT1G54650 212 / 4e-67 Methyltransferase family protein (.1.2) Lus10024993 [exp] 118 / 2e-29 AT2G26200 726 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF13489 [poplar] [flax] Methyltransf_23 Methyltransferase domain
Representative CDS sequence Show only first row Show all	>Potri.013G044300.1 pacid=42812756 polypeptide=Potri.013G044300.1.p locus=Potri.013G044300 ID=Potri.013G044300.1.v4.1 annot-version=v4.1 ATGAGTGCAGAAGCAGAAGCAGAAGCAGAAGCAGAGTACTTCTCCAAAGACTTTGAATGGGAAACACTAAGACAAGAAATAGAAGATAACCCTTCTTATC AATACCACTTACTCCCTTTCACTTGTACTCCTCCTTCACAACAACAAGAAATTCAAGTAAGTGAAGATTCAAAAGCATGGAAAAGGTTCCATCTTCGCCA TTCCTCTGGCAAATTCTTCAAGGAGAGAAGGTATTTGTTGAAGGAATTCCCTGAGTTGGTTTCCTGTAAAGAGTTTTCGAAGGTTTTGGAAGTTGGCTGT GGCAATGGCAGTTCTGCTATTCCTATCTTACGTGGCAACAAGGACATTATCGTATATGCTTGTGATTGTAGCAGTGAGACTCTTGAGAGGGCTAAAGAGA TTGTTCATTCCACTAATATATTCGCAGTCCAAAATCGTTTCCACCCATTCTTCTGTGACTTTGCTTTTACTGGGTTCCCGAAATGGTTGGTTTGTGATTC TTGTGTAGAAAGTTTTTCACTGAAACAGCAAGAATACTCCTCAGATGTTAAAGAGGGTGGTGTGGCAGATAAGAGTGGTTCATATTTGTCAAGAGAATGT GGCTGTTGCATTGGTGGGGTTGATTTTGTTAGCTTGATATTCACACTATCAGCGGTGCCCCAAAAAAAAATGTCCTCAGCTATCATGGAGTGCTTTTCTG TCCTGAAGCCTGGTGGCCTGCTACTTTTCAGGGATTATGGGCTCTATGACATGACTATGCTGCGGTTTGAGCAAGAAAAGAGAGTGGGGTTCCGTGAGTA CATGCGATCAGATGGAACTCGTTCTTATTTCTTCTGTTTGGATACGGTCAGGGATCTTTTTGTGGGTGTAGGCTTCATTGAGCTTGAGCTTGAGTATTGT TGCGTCAAGTCTGTGAATCGCCGTAAAGGGAAGAGCATGCAGAGGGTGTGGGTTCATGGGAAGTTCCAAAAGCCCGCATAA
AA sequence Show only first row Show all	>Potri.013G044300.1 pacid=42812756 polypeptide=Potri.013G044300.1.p locus=Potri.013G044300 ID=Potri.013G044300.1.v4.1 annot-version=v4.1 MSAEAEAEAEAEYFSKDFEWETLRQEIEDNPSYQYHLLPFTCTPPSQQQEIQVSEDSKAWKRFHLRHSSGKFFKERRYLLKEFPELVSCKEFSKVLEVGC GNGSSAIPILRGNKDIIVYACDCSSETLERAKEIVHSTNIFAVQNRFHPFFCDFAFTGFPKWLVCDSCVESFSLKQQEYSSDVKEGGVADKSGSYLSREC GCCIGGVDFVSLIFTLSAVPQKKMSSAIMECFSVLKPGGLLLFRDYGLYDMTMLRFEQEKRVGFREYMRSDGTRSYFFCLDTVRDLFVGVGFIELELEYC CVKSVNRRKGKSMQRVWVHGKFQKPA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G54650			Methyltransferase family prote...		Potri.013G044300 [exp]	0	1
AT1G53700		PK3AT, WAG1	PROTEIN KINASE 3 ARABIDOPSIS T...		Potri.001G435900 [exp]	3.00	0.8388	Pt-PSPK3.1
AT5G57770			Plant protein of unknown funct...		Potri.018G099000 [exp]	3.87	0.8214
AT2G03630			unknown protein		Potri.008G096300 [exp]	4.89	0.8001
AT1G79860		ATROPGEF12, ROP...	MATERNAL EFFECT EMBRYO ARREST ...		Potri.003G052600 [exp]	6.70	0.7533
					Potri.003G204425 [exp]	10.09	0.7899
AT1G75640			Leucine-rich receptor-like pro...		Potri.002G027400 [exp]	10.24	0.7854
					Potri.001G020140 [exp]	11.31	0.7726
AT2G01830		CRE1, AHK4, WOL...	WOODEN LEG 1, WOODEN LEG, CYTO...		Potri.010G102900 [exp]	13.67	0.7627	CRE1.1
AT1G18400	bHLH	bHLH044, BEE1	BR enhanced expression 1 (.1)		Potri.004G099400 [exp]	22.44	0.7602
AT1G14610		VALRS, TWN2	VALYL TRNA SYNTHETASE, TWIN 2,...		Potri.007G004100 [exp]	23.81	0.7235	Pt-VALRS.2

Compare expression of checked genes

Potri.013G044300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.