Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22690 582 / 0 unknown protein AT1G11290 574 / 0 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G16860 566 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G30700 561 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G29760 546 / 0 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G18750 545 / 0 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G08070 543 / 0 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G12770 532 / 9e-180 MEF22 mitochondrial editing factor 22 (.1) AT3G57430 533 / 1e-177 OTP84 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G27610 531 / 7e-177 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G191000 [exp] 588 / 0 AT1G11290 1178 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G083700 [exp] 570 / 0 AT3G22690 1050 / 0.0 unknown protein Potri.006G181800 [exp] 560 / 0 AT4G30700 1025 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G040100 [exp] 560 / 0 AT1G08070 974 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G071800 [exp] 558 / 0 AT1G08070 606 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G031600 [exp] 558 / 0 AT3G15930 784 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G011000 [exp] 557 / 0 AT1G08070 572 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G059400 [exp] 556 / 0 AT4G18750 1110 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G047800 [exp] 554 / 0 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017446 [exp] 581 / 0 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10035788 [exp] 571 / 0 AT3G16610 636 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10035815 [exp] 546 / 0 AT4G30700 1026 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10033026 [exp] 543 / 0 AT1G08070 921 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029436 [exp] 535 / 0 AT3G08820 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10001220 [exp] 541 / 2e-180 AT3G57430 1110 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10038400 [exp] 536 / 1e-178 AT3G57430 1097 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018223 [exp] 528 / 2e-177 AT2G29760 931 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10040680 [exp] 526 / 6e-177 AT2G29760 926 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014707 [exp] 528 / 9e-175 AT3G63370 893 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family CL0109 [poplar] [flax] CDA PF14432 [poplar] [flax] DYW_deaminase DYW family of nucleic acid deaminases
Representative CDS sequence Show only first row Show all	>Potri.013G044700.2 pacid=42811588 polypeptide=Potri.013G044700.2.p locus=Potri.013G044700 ID=Potri.013G044700.2.v4.1 annot-version=v4.1 ATGGAAATGCCGCTGGTGTCCAAGCCTACTTCCCTCCTCCTCCCTCTCACATTTCAAAAACTCAAACAACCCATTCCTCCACCTTCCACCTTCACCAAAA CCCCACAAAACCCATCACCCCAACATCAAAACAAACACCAAAAGCATCCGTCGTTCACTCCTAATAACCATCTCTGTCTTGACCAAACCCAGCAGCTCCA TGCCCACATAATCAGAACCCACTTCAATCACGCCCAACAAGTTTCTTTTAGCCCCTTCGAATCACACGTAAGCCATGAAGCCCGGTACAATCTCCTTATA ACATCATACATTAAAAACAACAAGCCAAGATATGCACTGAACACCTATACTTACATGAGAAAACTTGACATAGAAGTTGACAGTTTCATTATACCATCAG TTCTTAAAGCTTGCAGCCAAATCTCAGTAGCCCGGATGGGGAAAGAAATTCATGGTTTTTCTGTTAAGAATGGATTGGTTAGTGATGTTTTTGTAGTCAA TGCATTGATGCAAATGTACTCGGAATGTGGTAGTTTAGTATCGGCCCGATTGCTGTTTGATAAAATGAGTGAGAGAGATGTTGTTTCGTGGAGTACGATG ATTAGAGCTTATAGTAGAAACAAATTGTTCATAGAAGGGTTGAAACTTATTGAAAATATGCATTTTTCGAATGTTAAGCCTAGTGAGGTTGCTATGATTA GCATGGTTAATCTATTTTCTGACCTTGAGAATGGTGAAATGGGGAAAGCAATGCATGGTTATGTTATAAGGAATAGCAATAGTGAGAAAATGGTTGTGCC TTTGACTACTTGTTTGATTGATATGTACGCAAAGTGTGGAAATTTAGATGCTGCAGTAACACTTTTTTATGGTTTTAGTCAAAGAAGCATTGTTTCATGG ACTGCCATGATTGCTGGCTACATTAGGTGCAATGATTTGGAAGAGGGTGAAAGATTATTCGTTAGAATGATTGAAGAAAATGTGTTTCCTAATGATATCA CCATGTTGAGTTTGATTATTTCATGTGGATTTGTAGGGGCTGTACAATTGGGCAAGCGGCTACATGCCTACATTTTAAGAAATGGGTTTGGAATGTCTTT GGCTTTAGCCACTGCTTTGGTTGACATGTATGGAAAATGTGGTGAGATAAGAAGTGCAAGAGCTATATTTGATAGCATGAAGAACAAAGATGTTATGACT TGGACAGCTATGATATCGGCTTATGCGCAAGCTAATTGTATAGACTATGCTTTTCAACTATTTGTCCAGATGAGGGATAACGGAGTGAGGCCAAATGAAT TGACAATGGTAAGCCTGCTTTCGTTATGTGCAGTAAATGGAGCCCTTGACATGGGCAAGTGGTTTCATGCTTACATAGACAAGCAAGGTGTTGAAGTAGA TGTGATACTGAAAACTGCTTTAATAGACATGTATGCCAAGTGTGGGGATATTAGTGGGGCTCAGAGGCTGTTCAGCGAAGCCATAGATCGAGACATCTGC ACATGGAATGTAATGATGGCTGGATACGGGATGCATGGATATGGTGAGAAAGCTTTGAAACTATTCACAGAGATGGAGACACTGGGTGTAAAACCCAATG ACATCACATTTATAGGAGCCCTGCATGCTTGCAGTCACGCTGGTTTGGTGGTGGAAGGAAAAGGACTTTTTGAGAAAATGATCCATGACTTTGGCTTGGT TCCAAAGGTTGAGCATTATGGGTGTATGGTTGATCTTCTTGGTCGAGCTGGACTGCTTGATGAGGCCTATAAGATGATTGAAAGCATGCCCGTGACACCT AATATTGCAATATGGGGTGCTATGCTTGCTGCTTGCAAGATTCATAAAAATTCTAACATGGGGGAATTAGCAGCGAGAGAGCTTCTTGCATTGGAACCTC AAAATTGTGGTTACAAAGTTCTCATGTCAAACATATATGCTGCAGCAAACAGATGGAATGATGTTGCAGGCATGAGAAAAGCTGTGAAGGATACAGGAAT AAAAAAGGAACCGGGAATGAGCTCAATCGAAGTAAATGGTTTAGTTCACGATTTTAAAATGGGAGATAGAGCACACCCTCTGATTGAAAAAATCAGTGAA ATGCTAGCTGAGATGAGCAAGAAATTAAAAGAGGCTGGCTACTTGCCAGACACATCTGTAGTCCTGCACAATATTGACGAGGAAGAGAAAGAAACTGCAC TTAACTACCATAGCGAGAAGTTGGCGATGGCTTTCGGTCTCATCAGTACTGCTCCAGGGACTCCTATTCGAGTTGTTAAGAATCTCCGAATTTGTGATGA CTGCCATACAGTAACCAAGCTGTTGTCTAAGATCTACAAAAGGGTAATTATAGTCAGGGACCGTAACCGTTTTCACCACTTTAGAGAAGGATCTTGTTCT TGTGGTGGTTATTGGTAA
AA sequence Show only first row Show all	>Potri.013G044700.2 pacid=42811588 polypeptide=Potri.013G044700.2.p locus=Potri.013G044700 ID=Potri.013G044700.2.v4.1 annot-version=v4.1 MEMPLVSKPTSLLLPLTFQKLKQPIPPPSTFTKTPQNPSPQHQNKHQKHPSFTPNNHLCLDQTQQLHAHIIRTHFNHAQQVSFSPFESHVSHEARYNLLI TSYIKNNKPRYALNTYTYMRKLDIEVDSFIIPSVLKACSQISVARMGKEIHGFSVKNGLVSDVFVVNALMQMYSECGSLVSARLLFDKMSERDVVSWSTM IRAYSRNKLFIEGLKLIENMHFSNVKPSEVAMISMVNLFSDLENGEMGKAMHGYVIRNSNSEKMVVPLTTCLIDMYAKCGNLDAAVTLFYGFSQRSIVSW TAMIAGYIRCNDLEEGERLFVRMIEENVFPNDITMLSLIISCGFVGAVQLGKRLHAYILRNGFGMSLALATALVDMYGKCGEIRSARAIFDSMKNKDVMT WTAMISAYAQANCIDYAFQLFVQMRDNGVRPNELTMVSLLSLCAVNGALDMGKWFHAYIDKQGVEVDVILKTALIDMYAKCGDISGAQRLFSEAIDRDIC TWNVMMAGYGMHGYGEKALKLFTEMETLGVKPNDITFIGALHACSHAGLVVEGKGLFEKMIHDFGLVPKVEHYGCMVDLLGRAGLLDEAYKMIESMPVTP NIAIWGAMLAACKIHKNSNMGELAARELLALEPQNCGYKVLMSNIYAAANRWNDVAGMRKAVKDTGIKKEPGMSSIEVNGLVHDFKMGDRAHPLIEKISE MLAEMSKKLKEAGYLPDTSVVLHNIDEEEKETALNYHSEKLAMAFGLISTAPGTPIRVVKNLRICDDCHTVTKLLSKIYKRVIIVRDRNRFHHFREGSCS CGGYW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G22690			unknown protein		Potri.013G044700 [exp]	0	1
AT2G36000		EMB3114	EMBRYO DEFECTIVE 3114, Mitocho...		Potri.016G072200 [exp]	1.73	0.9850
AT4G25270		OTP70	organelle transcript processin...		Potri.015G128800 [exp]	1.73	0.9844
AT3G58830			haloacid dehalogenase (HAD) su...		Potri.002G060600 [exp]	2.00	0.9844
AT1G71460			Pentatricopeptide repeat (PPR-...		Potri.019G075400 [exp]	2.82	0.9812
AT1G06190			Rho termination factor (.1.2)		Potri.002G037800 [exp]	3.16	0.9802
AT5G51545		LPA2	low psii accumulation2 (.1)		Potri.015G129600 [exp]	3.31	0.9740
AT2G02980		OTP85	ORGANELLE TRANSCRIPT PROCESSIN...		Potri.010G168800 [exp]	3.46	0.9777
AT3G09650		CRM3, HCF152	HIGH CHLOROPHYLL FLUORESCENCE ...		Potri.016G085300 [exp]	5.29	0.9634
AT4G27990		ATYLMG1-2	YGGT family protein (.1)		Potri.002G250200 [exp]	6.00	0.9766
AT5G63630			P-loop containing nucleoside t...		Potri.014G097700 [exp]	6.32	0.9750

Compare expression of checked genes

Potri.013G044700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.