Plant FIBer expression Database

Potri.013G045410 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.019G016106
[exp]
104 / 1e-29 ND /
Potri.019G015700
[exp]
103 / 6e-29 ND /
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.013G045410.1 pacid=42811359 polypeptide=Potri.013G045410.1.p locus=Potri.013G045410 ID=Potri.013G045410.1.v4.1 annot-version=v4.1
ATGAACAAAATTTCAAACTTGATAGTGTTCATGTTAGTTCACGGACTAGTAATACTATCCCCTTCCACTAGTGCCATGCACATGGTTCAGGCCTCTGATA
CGGCTGATCAGCAGGCAGCATTGGAAACAACTTCCAGTAGGAACTGGGATCTTCCTCGAAAACTCAAGGTAGCATACCCACCAGAAAACATGAGAGGAAA
TGACAAATATTATACAGCGAAAAAATTGAAAGGCATCAAAATCATGCTCTCTCTCGATAGTGATCGTCAGTCGGGCACTGTTAAAATTGCTTCCACTAAG
CATTTCTCTGCAGAAGTAAACGCGGAGCTAGAAAGAATACTCGGGACACCGAAACCATCTTCTCCAAATCCCAACCCACTTCATCATTATGGCACTCCTC
CCAGGAATGCAATGGACACAAGCATGCCGAAGGCAACTTGCAAGCCAAAGTGCAAACTCTAG
AA sequence
>Potri.013G045410.1 pacid=42811359 polypeptide=Potri.013G045410.1.p locus=Potri.013G045410 ID=Potri.013G045410.1.v4.1 annot-version=v4.1
MNKISNLIVFMLVHGLVILSPSTSAMHMVQASDTADQQAALETTSSRNWDLPRKLKVAYPPENMRGNDKYYTAKKLKGIKIMLSLDSDRQSGTVKIASTK
HFSAEVNAELERILGTPKPSSPNPNPLHHYGTPPRNAMDTSMPKATCKPKCKL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.013G045410
[exp]
0 1
AT5G07580 AP2_ERF Integrase-type DNA-binding sup... Potri.003G151000
[exp]
3.16 0.9254
AT1G15460 ATBOR4 ARABIDOPSIS THALIANA REQUIRES ... Potri.003G059700
[exp]
8.60 0.9067
Potri.019G016106
[exp]
10.72 0.8647
AT5G06720 ATPA2 peroxidase 2 (.1) Potri.001G011500
[exp]
14.38 0.8969 PRX1.12
AT2G38740 Haloacid dehalogenase-like hyd... Potri.014G043500
[exp]
21.90 0.8734
AT5G20230 SAG14, ATBCB SENESCENCE ASSOCIATED GENE 14,... Potri.001G192100
[exp]
24.39 0.8420
AT5G47240 ATNUDT8 nudix hydrolase homolog 8 (.1) Potri.018G069100
[exp]
24.49 0.8543
AT5G23250 Succinyl-CoA ligase, alpha sub... Potri.016G071850
[exp]
39.77 0.8563
AT1G50020 unknown protein Potri.001G289400
[exp]
40.91 0.8567
AT3G47570 Leucine-rich repeat protein ki... Potri.004G060100
[exp]
41.73 0.8474

Potri.013G045410 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.