Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-PPCK2.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04530 366 / 2e-128 ATPPCK2, PEPCK2, PPCK2 phosphoenolpyruvate carboxylase kinase 2 (.1) AT1G08650 356 / 2e-124 ATPPCK1, PPCK1 phosphoenolpyruvate carboxylase kinase 1 (.1.2) AT1G12580 234 / 1e-73 PEPKR1 phosphoenolpyruvate carboxylase-related kinase 1 (.1) AT1G50700 224 / 6e-70 CPK33 calcium-dependent protein kinase 33 (.1) AT1G12680 221 / 2e-69 PEPKR2 phosphoenolpyruvate carboxylase-related kinase 2 (.1) AT1G76040 222 / 1e-68 CPK29 calcium-dependent protein kinase 29 (.1.2) AT3G20410 220 / 4e-68 CPK9 calmodulin-domain protein kinase 9 (.1) AT1G61950 219 / 1e-67 CPK19 calcium-dependent protein kinase 19 (.1) AT4G04720 215 / 3e-66 CPK21 calcium-dependent protein kinase 21 (.1) AT2G41860 214 / 5e-66 CPK14 calcium-dependent protein kinase 14 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G018100 [exp] 502 / 0 AT3G04530 379 / 2e-133 phosphoenolpyruvate carboxylase kinase 2 (.1) Potri.010G071400 [exp] 343 / 9e-120 AT1G08650 298 / 1e-101 phosphoenolpyruvate carboxylase kinase 1 (.1.2) Potri.008G166500 [exp] 327 / 3e-113 AT1G08650 287 / 2e-97 phosphoenolpyruvate carboxylase kinase 1 (.1.2) Potri.003G120800 [exp] 236 / 1e-74 AT1G12580 605 / 0.0 phosphoenolpyruvate carboxylase-related kinase 1 (.1) Potri.017G048400 [exp] 226 / 3e-71 AT1G12680 471 / 7e-164 phosphoenolpyruvate carboxylase-related kinase 2 (.1) Potri.012G134600 [exp] 227 / 5e-71 AT1G12580 569 / 0.0 phosphoenolpyruvate carboxylase-related kinase 1 (.1) Potri.015G136900 [exp] 226 / 2e-70 AT1G12580 587 / 0.0 phosphoenolpyruvate carboxylase-related kinase 1 (.1) Potri.005G251500 [exp] 222 / 1e-69 AT1G12680 662 / 0.0 phosphoenolpyruvate carboxylase-related kinase 2 (.1) Potri.007G112400 [exp] 221 / 2e-69 AT1G12680 492 / 4e-172 phosphoenolpyruvate carboxylase-related kinase 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014657 [exp] 414 / 3e-147 AT1G08650 351 / 2e-122 phosphoenolpyruvate carboxylase kinase 1 (.1.2) Lus10042560 [exp] 388 / 3e-137 AT1G08650 344 / 1e-119 phosphoenolpyruvate carboxylase kinase 1 (.1.2) Lus10011824 [exp] 260 / 5e-88 AT1G08650 227 / 3e-75 phosphoenolpyruvate carboxylase kinase 1 (.1.2) Lus10041132 [exp] 229 / 2e-72 AT1G12680 608 / 0.0 phosphoenolpyruvate carboxylase-related kinase 2 (.1) Lus10036464 [exp] 229 / 2e-72 AT1G12680 607 / 0.0 phosphoenolpyruvate carboxylase-related kinase 2 (.1) Lus10015009 [exp] 230 / 3e-72 AT1G12580 549 / 0.0 phosphoenolpyruvate carboxylase-related kinase 1 (.1) Lus10038889 [exp] 229 / 9e-72 AT1G12580 555 / 0.0 phosphoenolpyruvate carboxylase-related kinase 1 (.1) Lus10021190 [exp] 215 / 4e-70 AT3G04530 186 / 1e-58 phosphoenolpyruvate carboxylase kinase 2 (.1) Lus10029346 [exp] 218 / 7e-67 AT2G38910 834 / 0.0 calcium-dependent protein kinase 20 (.1) Lus10021248 [exp] 218 / 1e-66 AT3G10660 809 / 0.0 calmodulin-domain protein kinase cdpk isoform 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF14531 [poplar] [flax] Kinase-like Kinase-like
Representative CDS sequence Show only first row Show all	>Potri.013G046100.1 pacid=42811965 polypeptide=Potri.013G046100.1.p locus=Potri.013G046100 ID=Potri.013G046100.1.v4.1 annot-version=v4.1 ATGTGTGATGATACCTTAAAGAGCAACTATCATCTCTGTGAAGAGATCGGCCGAGGAAGATTTGGCACGATCTCTCGTTGTTTTTCACCCATCAAGAACG AATTCTTTGCTTGCAAATCTATCGACAAGAATCTCCTTAATGACCCAACTGACCGTGAGTGTCTTCAAAACGAAGCAAAGATTATGTCCCTCTTGTCTCC CCATCCAAACATTGTCCAACTCTTCGATGTCTACGATACTGAAGATTCTCTTGACATGGTATTAGAGCTTTGCCAGCAGTCTACTCTTTATGATCGTTTA ATGAAGAGTAGTAATGACGGGTTAAGCGAAGGCAGGTGTGCGTCGATAATGAAACAATTATTGACTGCAATAGCGCATTGCCATAGATTTGGTATTGTGC ACAGAGATATTAAGCCGGATAACATATTGTTTGATGAGATGAACCGGGTCAAGTTGGCGGATTTTGGGTCCGCTGATTGGGTTGGGGAGGAGGGGACGTT GAGTGGGGTGGTGGGTACCCCGTATTATGTGGCGCCGGAGGTGGTGATGGGGAGAGATTATAATGAGAAAGTTGATGTGTGGAGTGCCGGTGTCGTTTTG TATGTTTTGTTAGCTGGATTTCCGCCGTTTTATGGGGAGACTGCTGAGGAGATTTTTCAGGCTGTTGTTAGAGGGAATTTGAGGTTTCCTCCTAAGGTTT TTAGAAATGTTTCCCCGGAAGCTAAGGATCTGTTGAGGAAGATGATTTGTAGAGACGTTTCTAGGAGATTTTCAGCTGAGCAAGCTCTATGGCACCCATG GATCTTGAGTGGAGGAGACTAG
AA sequence Show only first row Show all	>Potri.013G046100.1 pacid=42811965 polypeptide=Potri.013G046100.1.p locus=Potri.013G046100 ID=Potri.013G046100.1.v4.1 annot-version=v4.1 MCDDTLKSNYHLCEEIGRGRFGTISRCFSPIKNEFFACKSIDKNLLNDPTDRECLQNEAKIMSLLSPHPNIVQLFDVYDTEDSLDMVLELCQQSTLYDRL MKSSNDGLSEGRCASIMKQLLTAIAHCHRFGIVHRDIKPDNILFDEMNRVKLADFGSADWVGEEGTLSGVVGTPYYVAPEVVMGRDYNEKVDVWSAGVVL YVLLAGFPPFYGETAEEIFQAVVRGNLRFPPKVFRNVSPEAKDLLRKMICRDVSRRFSAEQALWHPWILSGGD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G04530		ATPPCK2, PEPCK2...	phosphoenolpyruvate carboxylas...		Potri.013G046100 [exp]	0	1	Pt-PPCK2.1
AT5G46330		FLS2	FLAGELLIN-SENSITIVE 2, Leucine...		Potri.011G068500 [exp]	1.00	0.9273
					Potri.003G074051 [exp]	5.47	0.8964
AT2G13350			Calcium-dependent lipid-bindin...		Potri.001G458101 [exp]	5.47	0.8774
AT2G26850			F-box family protein (.1)		Potri.001G273900 [exp]	6.92	0.8550
					Potri.003G038525 [exp]	8.00	0.8805
AT1G68585			unknown protein		Potri.010G126800 [exp]	10.95	0.8998
AT2G41760			unknown protein		Potri.006G051500 [exp]	20.44	0.8767
AT5G12250		TUB6	beta-6 tubulin (.1)		Potri.001G104600 [exp]	21.00	0.8782
AT2G03690			coenzyme Q biosynthesis Coq4 f...		Potri.008G097100 [exp]	24.79	0.8246
AT3G54140		ATPTR1	ARABIDOPSIS THALIANA PEPTIDE T...		Potri.006G096800 [exp]	28.49	0.8614

Compare expression of checked genes

Potri.013G046100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.