Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08640 358 / 5e-125 CJD1 Chloroplast J-like domain 1 (.1) AT2G20920 40 / 0.0008 Protein of unknown function (DUF3353) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G018300 [exp] 497 / 5e-180 AT1G08640 342 / 2e-118 Chloroplast J-like domain 1 (.1) Potri.009G137600 [exp] 43 / 0.0001 AT2G20920 301 / 2e-102 Protein of unknown function (DUF3353) (.1) Potri.004G177300 [exp] 42 / 0.0003 AT2G20920 306 / 2e-104 Protein of unknown function (DUF3353) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022022 [exp] 377 / 2e-132 AT1G08640 345 / 1e-119 Chloroplast J-like domain 1 (.1) Lus10042564 [exp] 350 / 5e-121 AT1G08640 308 / 5e-104 Chloroplast J-like domain 1 (.1) Lus10024004 [exp] 42 / 0.0003 AT2G20920 332 / 8e-115 Protein of unknown function (DUF3353) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11833 [poplar] [flax] CPP1-like Protein CHAPERONE-LIKE PROTEIN OF POR1-like
Representative CDS sequence Show only first row Show all	>Potri.013G046200.1 pacid=42812032 polypeptide=Potri.013G046200.1.p locus=Potri.013G046200 ID=Potri.013G046200.1.v4.1 annot-version=v4.1 ATGGCTTTGGCGGTCTCAAATGTCCTTAACTGCCCCAAACGCCAAATTTCCCAGAGGAATTACACTCTCAAAAGCTCAGTTTTAAAATCCCCCCCTTCTT TTCTCAGATTTCCTAGAGTTGAAAGGCAACATAAATGTTTTATTTATGCTTCTGCGTCCGCAGCAGGAGGCTCTAGGTCAGATAATGACTTAAACCCATA TGAGGTTCTTGGTGTGAATCCCATCGAGGGGTTTGATATGGTCAAGGCAGCGTATGCAAAAAAGCGCAAAGAGGCCCAAATAGAGGGTGATGAAGTAGCT GCTGCTCAGCTAGAGAAGGCATATGATAAATTGATGATGGCTCAGTTAAGTAATCGGAAGAAGGGTGTGACTTATGGTTCATTCAAGGTCTCAAAGGACA TAAAATATGCTGATAAGCAGCCGATTGTACCATGGGGACCAAGGTTTTCCAAGTCCAGTGAAAATGACATGCGCATCAACCTCGCAATATCTGTTGCATT TACAGCTTGGATTCTTATCAAACGCAGTGCTGAATATAAACCTCTTCAGTTTTTGGCTTTCGCATTTGTATATCGAATTTTTGAGAAGTTAAAAGCCTTT GAACCTCCTGTTTCACAAACATATACAGAAGAAGGTGAAGATGAGGGACGAACACTGCGCTTGGGAAAACGGATTCTTCGTTCCCTCGCACTAGTGTTTG GCTCTGTTGCTTTTGCTTCCTTGGCTTACACTGGTATTTTGAATTTGATTGAGATGGCTGGCAGTTACATACCTGTTTTTCTTTACAATAATCAGGAACT GCTAATCACCACTGCCACATCAGTCATTCTCTACATCCTGGCATCATATTATCGGTAA
AA sequence Show only first row Show all	>Potri.013G046200.1 pacid=42812032 polypeptide=Potri.013G046200.1.p locus=Potri.013G046200 ID=Potri.013G046200.1.v4.1 annot-version=v4.1 MALAVSNVLNCPKRQISQRNYTLKSSVLKSPPSFLRFPRVERQHKCFIYASASAAGGSRSDNDLNPYEVLGVNPIEGFDMVKAAYAKKRKEAQIEGDEVA AAQLEKAYDKLMMAQLSNRKKGVTYGSFKVSKDIKYADKQPIVPWGPRFSKSSENDMRINLAISVAFTAWILIKRSAEYKPLQFLAFAFVYRIFEKLKAF EPPVSQTYTEEGEDEGRTLRLGKRILRSLALVFGSVAFASLAYTGILNLIEMAGSYIPVFLYNNQELLITTATSVILYILASYYR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G08640		CJD1	Chloroplast J-like domain 1 (....		Potri.013G046200 [exp]	0	1
AT1G32580			plastid developmental protein ...		Potri.008G169900 [exp]	1.73	0.9667
AT5G19370			rhodanese-like domain-containi...		Potri.009G069300 [exp]	2.23	0.9375
AT1G10522			unknown protein		Potri.010G094900 [exp]	4.24	0.9558
AT5G59500			protein C-terminal S-isoprenyl...		Potri.001G242400 [exp]	5.47	0.9249
AT5G08540			unknown protein		Potri.010G254800 [exp]	7.74	0.9482
AT3G47450		RIF1, ATNOA1, A...	RESISTANT TO INHIBITION WITH F...		Potri.001G124900 [exp]	10.39	0.9468
AT5G07900			Mitochondrial transcription te...		Potri.004G013000 [exp]	11.18	0.9185
AT1G59990		RH22, EMB3108	RNA helicase 22, EMBRYO DEFECT...		Potri.008G193800 [exp]	14.28	0.9373
AT5G13830			FtsJ-like methyltransferase fa...		Potri.010G202200 [exp]	14.42	0.9180
AT3G07800			Thymidine kinase (.1)		Potri.016G009951 [exp]	17.02	0.8408

Compare expression of checked genes

Potri.013G046200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.