Plant FIBer expression Database

Potri.013G046400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G08630 524 / 0 THA1 threonine aldolase 1 (.1.2.3.4.5)
AT3G04520 516 / 0 THA2 threonine aldolase 2 (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.019G018500
[exp]
629 / 0 AT1G08630 539 / 0.0 threonine aldolase 1 (.1.2.3.4.5)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10000556
[exp]
556 / 0 AT1G08630 536 / 0.0 threonine aldolase 1 (.1.2.3.4.5)
Lus10014658
[exp]
555 / 0 AT1G08630 534 / 0.0 threonine aldolase 1 (.1.2.3.4.5)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0061 PLP_aminotran PF00155 Aminotran_1_2 Aminotransferase class I and II
Representative CDS sequence
>Potri.013G046400.6 pacid=42811243 polypeptide=Potri.013G046400.6.p locus=Potri.013G046400 ID=Potri.013G046400.6.v4.1 annot-version=v4.1
ATGGTGACAAGAACGGTGGATCTCCGGTCTGACACTGTCAGCAAACCAACTGAAGCAATGAGAGCTGCTATGGCAAATGCTGAGGTTGATGATGATGTTT
TGGGTCACGACCCGAGTGCGTTGCGGTTAGAGACTGAAATGGCGAAAATCATGGGCAAGGAGGCGGCTCTATTTGTTCCATCAGGCACCATGAGTAACCT
TATTAGTGTGCTTGTGCATTGTAACATTAGGGGAAGCGAGGTGATACTTGGAAGTAAGTCTCATATCCATATTTATGAGAATGGAGGCATCTCAACAATT
GGAGGTGTTCATCCTCGAACCGTGAAGAATAATGAGGATGGAACGATGGATATTGATTTAATTGAAGCTGCAATCAGAGATCCAAGAGGGGAGATTGTTT
ATCCAACTACTAGACTTATCTGTTTGGAGAATTCACAAGGCAGCTGCGGTGGTAGATGCTTGTCTGTAGAATATACTGACAGAGTTGGAGAATTAGCTAA
AAAGCATGGTTTGAAGCTTCACATTGATGGGGCTCGCATTTTTAATGCATCAGTTGCACTTGGAGTTCCTGTTAGTAGGCTTGTACAGGATGCAGATTCA
GTTTCGGTGTGTCTGTCAAAAGGTTTAGGTGCACCAGTTGGCTCTGTTATTGTTGGTTCCAAAAGCTTTGTTGCCAAGGCTAGAATCCTCAGAAAAACCT
TAGGAGGTGGAATGAGACAAGTCGGTGTCCTTTGTGCTGCTGCTTTAGTTGGTGTACAAGAGAATGTTTCAAAGCTCGAGGATGATCACAAGAAAGCTAA
GATGCTAGCAGAGGGGCTGAATCAAATTAAAGGACTAAGAGTGAATGTTGCTGCTGTGGAAACCAATATTATATATATCGACGTAGTCGAGGGCGCAGCA
GAAAAGCTGTGCAAGAACTTGGAACAGCATGGTATACTTATAATGCAAGAGAGTCCAATCAGCATTAGGGTTGCCTTTCACCACCAAATTTCAGCAAGTG
ATGTGCAGTACACTCTCTCATGCTTTAAGCAAGCTTTGACTGGGGTGGTGCAAGAGGATAATGGCATCTAG
AA sequence
>Potri.013G046400.6 pacid=42811243 polypeptide=Potri.013G046400.6.p locus=Potri.013G046400 ID=Potri.013G046400.6.v4.1 annot-version=v4.1
MVTRTVDLRSDTVSKPTEAMRAAMANAEVDDDVLGHDPSALRLETEMAKIMGKEAALFVPSGTMSNLISVLVHCNIRGSEVILGSKSHIHIYENGGISTI
GGVHPRTVKNNEDGTMDIDLIEAAIRDPRGEIVYPTTRLICLENSQGSCGGRCLSVEYTDRVGELAKKHGLKLHIDGARIFNASVALGVPVSRLVQDADS
VSVCLSKGLGAPVGSVIVGSKSFVAKARILRKTLGGGMRQVGVLCAAALVGVQENVSKLEDDHKKAKMLAEGLNQIKGLRVNVAAVETNIIYIDVVEGAA
EKLCKNLEQHGILIMQESPISIRVAFHHQISASDVQYTLSCFKQALTGVVQEDNGI

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G08630 THA1 threonine aldolase 1 (.1.2.3.4... Potri.013G046400
[exp]
0 1
AT1G20560 AAE1 acyl activating enzyme 1 (.1.2... Potri.005G102901
[exp]
6.85 0.8929
AT4G20780 CML42 calmodulin like 42 (.1) Potri.006G276500
[exp]
11.22 0.8896
AT1G63440 HMA5 heavy metal atpase 5 (.1) Potri.003G125600
[exp]
19.20 0.8859 Pt-HMA5.3
AT1G14040 EXS (ERD1/XPR1/SYG1) family pr... Potri.010G164900
[exp]
24.97 0.8823
AT5G36110 CYP716A1 "cytochrome P450, family 716, ... Potri.001G002800
[exp]
27.74 0.8833 CYP716D1
AT4G10350 NAC BRN2, NST4, ANA... BEARSKIN 2, NAC domain contain... Potri.019G066000
[exp]
29.73 0.8847
AT1G64160 Disease resistance-responsive ... Potri.013G142401
[exp]
34.08 0.8773
AT5G25610 ATRD22, RD22 RESPONSIVE TO DESSICATION 22, ... Potri.004G136000
[exp]
34.08 0.8187
AT1G15385 unknown protein Potri.003G062300
[exp]
34.49 0.8824
AT3G23240 AP2_ERF ERF1, ATERF1 ethylene response factor 1 (.1... Potri.005G223300
[exp]
37.46 0.8748

Potri.013G046400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.