Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08620 1279 / 0 PKDM7D Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1), Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.2) AT4G20400 648 / 0 PKDM7B, JMJ14 JUMONJI 14 (.1.2) AT1G30810 647 / 0 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1), Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.2) AT2G34880 594 / 0 PKDM7C, MEE27 maternal effect embryo arrest 27, Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1) AT2G38950 453 / 6e-144 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1) AT1G63490 304 / 5e-86 transcription factor jumonji (jmjC) domain-containing protein (.1) AT5G46910 216 / 5e-58 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1) AT3G48430 173 / 2e-43 JUMONJI JMJ12, REF6 Jumonji domain-containing protein 12, relative of early flowering 6 (.1) AT5G04240 161 / 9e-40 JUMONJI ELF6 EARLY FLOWERING 6, Zinc finger (C2H2 type) family protein / transcription factor jumonji (jmj) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G018700 [exp] 2165 / 0 AT1G08620 1260 / 0.0 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1), Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.2) Potri.002G037300 [exp] 719 / 0 AT1G08620 669 / 0.0 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1), Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.2) Potri.001G440900 [exp] 663 / 0 AT4G20400 733 / 0.0 JUMONJI 14 (.1.2) Potri.011G155100 [exp] 660 / 0 AT4G20400 707 / 0.0 JUMONJI 14 (.1.2) Potri.003G126600 [exp] 332 / 1e-93 AT1G63490 1013 / 0.0 transcription factor jumonji (jmjC) domain-containing protein (.1) Potri.003G096100 [exp] 228 / 1e-61 AT5G46910 924 / 0.0 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1) Potri.001G137700 [exp] 219 / 6e-59 AT5G46910 893 / 0.0 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1) Potri.012G092400 [exp] 197 / 1e-50 AT3G48430 803 / 0.0 Jumonji domain-containing protein 12, relative of early flowering 6 (.1) Potri.015G089000 [exp] 191 / 8e-49 AT3G48430 807 / 0.0 Jumonji domain-containing protein 12, relative of early flowering 6 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022024 [exp] 1062 / 0 AT3G04490 1370 / 0.0 unknown protein Lus10042566 [exp] 1011 / 0 AT3G04490 1382 / 0.0 unknown protein Lus10008063 [exp] 655 / 0 AT1G30810 901 / 0.0 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1), Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.2) Lus10033903 [exp] 592 / 0 AT1G08620 572 / 0.0 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1), Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.2) Lus10003548 [exp] 465 / 3e-145 AT1G08620 455 / 4e-142 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1), Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.2) Lus10008495 [exp] 333 / 1e-93 AT1G63490 916 / 0.0 transcription factor jumonji (jmjC) domain-containing protein (.1) Lus10030988 [exp] 229 / 2e-62 AT5G46910 850 / 0.0 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1) Lus10035385 [exp] 229 / 2e-62 AT5G46910 843 / 0.0 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1) Lus10008531 [exp] 223 / 1e-58 AT1G63490 796 / 0.0 transcription factor jumonji (jmjC) domain-containing protein (.1) Lus10019482 [exp] 181 / 1e-45 AT3G48430 984 / 0.0 Jumonji domain-containing protein 12, relative of early flowering 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [poplar] [flax] Cupin PF02373 [poplar] [flax] JmjC JmjC domain, hydroxylase CL0029 [poplar] [flax] Cupin PF02375 [poplar] [flax] JmjN jmjN domain CL0029 [poplar] [flax] PF02928 [poplar] [flax] zf-C5HC2 C5HC2 zinc finger CL0029 [poplar] [flax] PF05964 [poplar] [flax] FYRN F/Y-rich N-terminus CL0029 [poplar] [flax] PF05965 [poplar] [flax] FYRC F/Y rich C-terminus
Representative CDS sequence Show only first row Show all	>Potri.013G046700.5 pacid=42811047 polypeptide=Potri.013G046700.5.p locus=Potri.013G046700 ID=Potri.013G046700.5.v4.1 annot-version=v4.1 ATGGGAACTGAACTCATTAGAGTTCATGTTAAGGAGGAGAATGATGATATCCCATCAGTTCCACCTGGTTTCGAGTCTTTTGCAGCTTACACCTTAAAAA GGGTGCCAGATGGTGAAAAACAAGAAAGTAATGTAACCAGTTGTTCAGCCACTACAAGCGCTTCTGAATCACAGTCAGTCAAGATGGACACAGAGTTTGA GGATGAAGCAAAAGTTACGAGGTCCCTTCGACGCAGACCCTGGATAAAGTTTGAACATTTGGATAGCTGTTCAGAGGACGAGTCTGATTCTGTGAAGCTT AATCAAAATCTCTCCTTAAGGTCTCGCCTTCCCAAGGGAGTGATCCGTGGATGTCCACAATGCAGTAATTGCCAAAAGGTCAGTGCAAGATGGCATCCAG AAAGTGCTTGTAAGCTTGATATTGAGGATGCTCCTGTATTCTACCCAACTGAAGAGGAGTTTGAAGATACTTTGAAATATATTGCTAGCATACGGCCTAA AGCTGAACAATATGGAATCTGTCGCATTGTTCCTCCTCCTTCTTGGAAACCTCCCTGTCCCCTTAAGGAAAAAACTATCTGGGAGGGCTCTACGTTTGCA ACTCGTGTCCAGAGGGTTGACAAACTGCAGAACCGGGACTCTATGAGAAAGAGGTCAACGATGTCTAATCATACAAGGAAGAAAAGGAGAAGATGCATGA GCATGGCAGTAGATTGTGGTACAGATATTGGAAGCATCTCAGGGTCAAATGATGCTGGTGTTTGTGAAGCTGAGAGATTTGGGTTTGAACCTGGCCCACT GTTTACTTTGGATACATTTCAGAAATATGCTGATGATTTCAAGGCCCAGTACTTCAGGAAGAATGAGAATACTATTAATAAGGGAGGCGATATGACAACG TTTCAGAAGACTTGTGAACCAACATTGGATAATATTGAGGGCGAATATTGGCGAATTGTAGAGAAAGCAACTGAAGAAATTGAGGTCCTTTATGGGGCTG ATCTGGAAACTGGGGTTTTTGGCAGTGGGTTTCCAAAAACATCTAATGAAGTTAGTTCTGCAACAAATGATCGTTATACAAAATCAGGCTGGAACCTGAA TAACTTTCCGAGGCTTCCTGGATCCATTCTTTCCTTTGAAAGTGGGGATATATCCGGTGTTTTGGTGCCATGGCTGTATATAGGGATGTGCTTCTCCTCC TTCTGTTGGCATGTTGAAGATCATCACCTATATTCACTGAATTACATGCATTGGGGCGCACAAAAGATGTGGTATGGTGTGCCAGGGAAGGATGCCATTA AATTGGAAGAGACCATGAGAAAGCATTTACCTGATCTTTTTGAAGAACAACCCGACTTGCTTCATAAGCTGGTGACCCAGCTTTCCCCCAACATACTAAG ATCTGAAGGAGTGCCTGTCTATCGGTGTGTTCAGAATTCCGGAGAGTTTGTGCTAACCTTTCCTCGAGCATATCATTCAGGGTTTAATTGTGGTTTCAAT TGTGCGGAGGCAGTGAATGTAGCTCCTGTTGACTGGTTGCCCCATGGACAGACTGCTATAGAGCTGTACTGTGAGCAGAGACGGAGGACTTCCATCTCCC ATGATAAACTGTTGCTTGGGGCAGCAAGGGAAGCAGTGAGAGCACATTGGGAACTTAATTTACTTAAGAGGAATACCTTGGATAACTTAAGATGGAAAGA CGTGTGTGGAAAAAATGGGATATTAGCAAAAGCATTCAAGGAACGTGTGGAGACAGAGCGTGTGAGGAGACAATTTCTCTGCAACTCTTCCCCAACATTG AAGATGGAGAGTGATTTTGATGCCACAAGTGAGAGGGAATGCAGTGTCTGCCTTTTTGATTTGCATCTGTCTGCAGCAGGGTGTCATTGCTCTCCAGATA AGTTTGCATGCTTGACTCATGCAAAGCAGTTGTGTTCATGTGCTTGGGGTGCCAAATTTTTCCTGTTTCGCTATGATATCAGTGAATTAAATATCCTCCT GGAGGCATTGGAAGGAAAATTGAGTGCAGTATACCGATGGGCAAGACTAGATCTTGGACTTGCCCTGACGAGTTTCGTTTCCAAAGACAACACACAAGAT GTTAAATTATCTTATTCTCCAATAAGAACAGCAACTGAACCGGTGAGATCACACACACCAGCAGATCCTTGTAGAGATTTACCAGGGAGAGCAATATCTA GTGATATTAGAATGAATTCATCTGGGATCTGTAGTCAGATAGCATTGGAAGAAGAGAAGAAACCACCTGAAGGCACTCCTTCAAAAGATGTGAGGGCATC ATCTGTATCTCATAGTTCTTTTCAAGTAATTGAGAGGGACAATGACAATTTGAAGCTAAACCAAAAAGGTTCTAGTCTTTTGTCTACCAATTTAAGAACG CTAGTTTGCCTGTTGTCTCAAGAAGACACATCTTATGCTGCAGGCCTGGCTTCAGAGAGATGTGAAGGGAAGAAGCCTTCAACTTTGGGTAATGACAATG TTATTCTTCTTAGTGATGATGAAGGTGATGAACAGAAGCCAATTTTAGAAAGGGCAAAAGAAAATGTTTACGGGAAGCTATCAATTTTGCATTATAGTTC ATGTAATGACAATAAAGATTCAATCTTAACTGTTCCTGTGGTTGATGGAGCACTTAAGAGTGAAAAGAATGTCAATTCGTTACCTGATGAACAAAAAAAT AATTCTTCATCTGGTCCTGTGGTGCAAGTGAAGGATGGCTATCATCAAGATGGTGGAAAGGTTTTGGAATTTAATCAACAGAATGTTTCTTGCCACACAG GTCCTAGCACAGCAGGATTTGGTAGGAATGTTCAGAATTCCTCAACTAATAGAGATACCAGTAAGGATAACGGAATGACAGATGTTGGGAGTCAGCATCC ACAGCCATGTGGCATTGGAAAGCTTAACAATGCAGACAAGATGGGAGGAAATGCCACCTCAACTTCATTGGACAACTCAAGAATTATGGCAGGTAGCCCA TCTTCCTCGCAAAATAACTTGGAGAGACACTACCGCCAGAAGGGTCCCCGCATTGCCAAGGTAGTGCGAAGGATCAATTGCAATGTTGAACCTCTGGAAT TTGGGGTTGTGCTTTCTGGAAAGTCATGGTGCAACAGCCAAGCAATTTTTCCCAAAGGATTTAGAAGTCGAGTTAGGTACATAAGTGTTCTAGATCCAGC AAATATGTGTTACTATGTCTCTGAAATACTGGATGCAGGGCGAAACGGTCCTCTATTTATGGTTTCCTTGGAGCATTGCCCAAATGAGGTATTTTTTCAT GTTTCAGCAGCCAGATGCTGGGAAATGGTTAGAGAGAGAGTGAATCAGGAGATCACAAAGCAGCATAAATCTGGAAGAATGAATCTTCCTCCCTTACAAC CTCCTGGAAGTCTTGATGGCTTTGAAATGTTTGGGTTTTCTTCACCAGCAATTGTGCAGGCCATAGAAGCATTAGACAGGAATCGAGTTTGTACAGATTA TTGGGACTCCAGGCCATATTCACGGCCACAAGGACAGATTCCGCAACATTCTCAATCCATAGTCAATGCAGGGCATTCCCAGGGAACACATGAGGACCAG AATATTTGTAAAGCCCCCGGGAGCCAGTTATTACCGGTTGAAGCTGATACGATACTTAGAGGTCTATTCAAGAAGGCAAGCCCAGAAGAATTGATCGCAC TGAGTCGTATTTTAAGTGGCAATAAGCCAACAGCTAATCCAGGTCTAATAGCACAGCTTCTTAATGAAGAGATTTGCCACCGTCCTAGATGA
AA sequence Show only first row Show all	>Potri.013G046700.5 pacid=42811047 polypeptide=Potri.013G046700.5.p locus=Potri.013G046700 ID=Potri.013G046700.5.v4.1 annot-version=v4.1 MGTELIRVHVKEENDDIPSVPPGFESFAAYTLKRVPDGEKQESNVTSCSATTSASESQSVKMDTEFEDEAKVTRSLRRRPWIKFEHLDSCSEDESDSVKL NQNLSLRSRLPKGVIRGCPQCSNCQKVSARWHPESACKLDIEDAPVFYPTEEEFEDTLKYIASIRPKAEQYGICRIVPPPSWKPPCPLKEKTIWEGSTFA TRVQRVDKLQNRDSMRKRSTMSNHTRKKRRRCMSMAVDCGTDIGSISGSNDAGVCEAERFGFEPGPLFTLDTFQKYADDFKAQYFRKNENTINKGGDMTT FQKTCEPTLDNIEGEYWRIVEKATEEIEVLYGADLETGVFGSGFPKTSNEVSSATNDRYTKSGWNLNNFPRLPGSILSFESGDISGVLVPWLYIGMCFSS FCWHVEDHHLYSLNYMHWGAQKMWYGVPGKDAIKLEETMRKHLPDLFEEQPDLLHKLVTQLSPNILRSEGVPVYRCVQNSGEFVLTFPRAYHSGFNCGFN CAEAVNVAPVDWLPHGQTAIELYCEQRRRTSISHDKLLLGAAREAVRAHWELNLLKRNTLDNLRWKDVCGKNGILAKAFKERVETERVRRQFLCNSSPTL KMESDFDATSERECSVCLFDLHLSAAGCHCSPDKFACLTHAKQLCSCAWGAKFFLFRYDISELNILLEALEGKLSAVYRWARLDLGLALTSFVSKDNTQD VKLSYSPIRTATEPVRSHTPADPCRDLPGRAISSDIRMNSSGICSQIALEEEKKPPEGTPSKDVRASSVSHSSFQVIERDNDNLKLNQKGSSLLSTNLRT LVCLLSQEDTSYAAGLASERCEGKKPSTLGNDNVILLSDDEGDEQKPILERAKENVYGKLSILHYSSCNDNKDSILTVPVVDGALKSEKNVNSLPDEQKN NSSSGPVVQVKDGYHQDGGKVLEFNQQNVSCHTGPSTAGFGRNVQNSSTNRDTSKDNGMTDVGSQHPQPCGIGKLNNADKMGGNATSTSLDNSRIMAGSP SSSQNNLERHYRQKGPRIAKVVRRINCNVEPLEFGVVLSGKSWCNSQAIFPKGFRSRVRYISVLDPANMCYYVSEILDAGRNGPLFMVSLEHCPNEVFFH VSAARCWEMVRERVNQEITKQHKSGRMNLPPLQPPGSLDGFEMFGFSSPAIVQAIEALDRNRVCTDYWDSRPYSRPQGQIPQHSQSIVNAGHSQGTHEDQ NICKAPGSQLLPVEADTILRGLFKKASPEELIALSRILSGNKPTANPGLIAQLLNEEICHRPR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G08620		PKDM7D	Transcription factor jumonji (...		Potri.013G046700 [exp]	0	1
					Potri.019G023500 [exp]	5.65	0.7593
AT1G21580			Zinc finger C-x8-C-x5-C-x3-H t...		Potri.005G182900 [exp]	6.16	0.7652
AT2G35050			Protein kinase superfamily pro...		Potri.003G110000 [exp]	6.32	0.7845
AT5G47940			unknown protein		Potri.001G265100 [exp]	6.32	0.7204
AT5G42340		PUB15	Plant U-Box 15 (.1)		Potri.003G214100 [exp]	10.81	0.7636
AT4G38200			SEC7-like guanine nucleotide e...		Potri.009G169800 [exp]	18.52	0.7529
AT3G10550		MTM1, AtMTM1	Arabidopsis thaliana myotubula...		Potri.008G026900 [exp]	21.49	0.7570
AT4G33210		SLOMO	SLOW MOTION, F-box family prot...		Potri.006G220900 [exp]	29.08	0.7502
AT3G11330		PIRL9	plant intracellular ras group-...		Potri.015G083800 [exp]	29.66	0.6580
					Potri.010G194850 [exp]	29.66	0.7490

Compare expression of checked genes

Potri.013G046700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.