Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04760 781 / 0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G09900 433 / 2e-145 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G79080 283 / 8e-88 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G39710 269 / 1e-80 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G12775 264 / 7e-80 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62930 263 / 9e-80 RPF3 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G63130 263 / 2e-79 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G22470 260 / 1e-78 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G12300 260 / 2e-78 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62670 257 / 2e-77 RPF2 rna processing factor 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G019300 [exp] 1061 / 0 AT3G04760 776 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.002G109500 [exp] 438 / 1e-147 AT1G09900 855 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.011G144300 [exp] 319 / 1e-101 AT1G79080 742 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G457300 [exp] 310 / 4e-98 AT1G79080 712 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G046000 [exp] 286 / 6e-88 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G147700 [exp] 266 / 1e-80 AT2G15630 736 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G032600 [exp] 262 / 2e-79 AT1G12700 493 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.016G025600 [exp] 263 / 4e-79 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G038400 [exp] 261 / 6e-79 AT1G12700 478 / 7e-161 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000554 [exp] 549 / 0 AT3G04760 535 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10014660 [exp] 543 / 0 AT3G04760 522 / 3e-180 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10031215 [exp] 265 / 4e-81 AT1G79080 544 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10014245 [exp] 264 / 2e-80 AT1G12700 427 / 5e-141 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10031792 [exp] 261 / 1e-79 AT1G79080 539 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10007468 [exp] 264 / 5e-79 AT5G01110 808 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027914 [exp] 265 / 6e-79 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012068 [exp] 264 / 2e-77 AT5G39710 1028 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012037 [exp] 258 / 2e-77 AT2G15630 677 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027916 [exp] 259 / 3e-77 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.013G047000.2 pacid=42812391 polypeptide=Potri.013G047000.2.p locus=Potri.013G047000 ID=Potri.013G047000.2.v4.1 annot-version=v4.1 ATGACAACATTTTCCACTGAGCTTATCTCTCACAATTATAGCTTTCCCTTCACTAGCAAACATCTAAAACCTTCTTTACTTTCACTTCAAAGCAATGTAG TTAGCTGCATTAACCCTAACCATAATGCCACTATCCACCACCTAGGAAACCAACCAAAAGTAAGGAGTGTTTTACCTGAAACAAGACCAGCCCTTGCTTT ATCTTATGATTTCGAAGAAACCCATTTGATGAGATTGCTTAATAGGTCTTGTAAAGCAGGCAAGTACAGTGAGTCCCTCTACTTTCTTGAGTGTATGGTT GCTAAAGATTATCAACCTGATGTTATTTTGTGTACTAAGCTCATTAAAGGGTTTTTTAATTCAAGAAATATAGACAAGGCTACTAGGGTGATGGGCATTT TGGAGAAGCATGGTAAACCTGATGTTTTTGCTTATAATGCAGTCATTAGTGGGTTTTGTAAGGCTAATCGGATTGAAAGTGCAAAAACAGTGCTTGATAG GATGAAAAGAAAGGGATTTTCGCCGGATGTTGTAACTCATAATATAATGATTGGGACTTTTTGTAGTAAGGGAAAGATTGATTTGGCTTTAAAAGTTTTT GAAGAATTGTTGAAAGATAACAATTGTAAGCCAACTCTTATTACCTACACGATTTTGATAGAGGCGTACATTCTTGAAGGTGGAATTGATGAAGCTTTGA AGCTTTTGGATGAGATGTTATCAAGAGGGCTTGAACCAGATACATTTACTTACAATGTAATAACTAGGGGGCTGTGCAAAGAGGGGAAGGTTGATCGAGC TTTTGAGTTTGTTAGGACCTTGAATTCTAGGGGTTGTAAACCAGATGTGATTACATATAATATATTGTTACGAGCATTGTTGAATCAAGGGAAATGGGAT GAAGGGGAGAAATGGATGAGTGAGATATTTTCAAGAGGTTGTGAGCCTAATGTTGTTACATATAGCATCTTGATTAGCTCTCTGTGTCGTGATGGGAAAA TTGAGGAATCAGTGAACTTGGTGAAGGTTATGAAGGAGAAGGGTTTGACTCCGGATGCTTATTGTTATGATCCATTGATTGCTGCTTTCTGTAGAGAGGG AAAATTGGATATGGCAATTGAGTTCTTGGATTGCATGATCTGTGATGGTTTTTTGCCAGATATTGTGAACTACAATACAATAATGGCCGCTCTTTGTAAG AATGGAAATGGTGATCATGCTGTGGAAATATTTGGAAAGCTAGATGAAGTGGGTTGTCCTCCAAATGTCAGTTCTTATAACACAATGTTAAGTGCATTGT GGAGTTCTGGAGACAGATATAGAGCCTTGGGAATGATATCACAGATGCTTAGCAAAGGAATTGACCCAGATGTGATAACTTATAATTCACTCATTTCGTG TTTGTGCAGAGATGGAATGGTGGATGAAGCTATTGGGCTGTTGGCAGACATGCTAAGTGGAAGGTTCCAGCCAAATATAGTCAGCTATAAAACTGTTCTT CTTGGGTTATGCAAAGCACATAGAATTGATGATGCTATTGAAGTGCTAGCAGCAATGATTGAAAATGGTTGCCAGCCAAATGAAACTACTTACACGTTGT TGATTGAAGGTATTGGTTTCTCTGGATCAAGAACTCAAGCAATGGAGTTGGCTAATTCTCTTTACATTATGAATGCTATTTCTGAAGATTCATTCAAACG TTTGAACAAGACCTTCCCTTTGCTTGATGTTTACAAAGGCTTCATTTATTCGAACTAG
AA sequence Show only first row Show all	>Potri.013G047000.2 pacid=42812391 polypeptide=Potri.013G047000.2.p locus=Potri.013G047000 ID=Potri.013G047000.2.v4.1 annot-version=v4.1 MTTFSTELISHNYSFPFTSKHLKPSLLSLQSNVVSCINPNHNATIHHLGNQPKVRSVLPETRPALALSYDFEETHLMRLLNRSCKAGKYSESLYFLECMV AKDYQPDVILCTKLIKGFFNSRNIDKATRVMGILEKHGKPDVFAYNAVISGFCKANRIESAKTVLDRMKRKGFSPDVVTHNIMIGTFCSKGKIDLALKVF EELLKDNNCKPTLITYTILIEAYILEGGIDEALKLLDEMLSRGLEPDTFTYNVITRGLCKEGKVDRAFEFVRTLNSRGCKPDVITYNILLRALLNQGKWD EGEKWMSEIFSRGCEPNVVTYSILISSLCRDGKIEESVNLVKVMKEKGLTPDAYCYDPLIAAFCREGKLDMAIEFLDCMICDGFLPDIVNYNTIMAALCK NGNGDHAVEIFGKLDEVGCPPNVSSYNTMLSALWSSGDRYRALGMISQMLSKGIDPDVITYNSLISCLCRDGMVDEAIGLLADMLSGRFQPNIVSYKTVL LGLCKAHRIDDAIEVLAAMIENGCQPNETTYTLLIEGIGFSGSRTQAMELANSLYIMNAISEDSFKRLNKTFPLLDVYKGFIYSN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G04760			Pentatricopeptide repeat (PPR-...		Potri.013G047000 [exp]	0	1
AT1G64150			Uncharacterized protein family...		Potri.003G134300 [exp]	1.00	0.9897
AT1G56190			Phosphoglycerate kinase family...		Potri.008G084500 [exp]	2.44	0.9796
AT3G54050		HCEF1	high cyclic electron flow 1 (....		Potri.016G109000 [exp]	2.64	0.9722
AT3G27160		GHS1	GLUCOSE HYPERSENSITIVE 1, Ribo...		Potri.001G331600 [exp]	3.00	0.9777	GHS1.1
AT5G66530			Galactose mutarotase-like supe...		Potri.007G023200 [exp]	3.46	0.9661
AT1G32080		AtLrgB	membrane protein, putative (.1...		Potri.003G099600 [exp]	5.65	0.9716
AT1G56190			Phosphoglycerate kinase family...		Potri.010G171500 [exp]	6.00	0.9703	Pt-PGK1.1
AT4G25050		ACP4	acyl carrier protein 4 (.1.2)		Potri.015G104500 [exp]	6.00	0.9722
AT5G40950		RPL27	ribosomal protein large subuni...		Potri.001G329500 [exp]	8.00	0.9776	Pt-RPL27.5
AT1G32470			Single hybrid motif superfamil...		Potri.003G089300 [exp]	8.36	0.9736	gdcH3,Pt-GDCH.3

Compare expression of checked genes

Potri.013G047000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.