Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10095 431 / 2e-149 Protein prenylyltransferase superfamily protein (.1) AT4G24490 56 / 5e-08 ATRGTA1 RAB geranylgeranyl transferase alpha subunit 1 (.1.2) AT3G59380 50 / 2e-06 FTA, PLP, ATFTA, PFT/PGGT-IALPHA PLURIPETALA, farnesyltransferase A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G127500 [exp] 51 / 7e-07 AT3G59380 433 / 2e-153 PLURIPETALA, farnesyltransferase A (.1) Potri.006G225100 [exp] 47 / 2e-05 AT4G24490 659 / 0.0 RAB geranylgeranyl transferase alpha subunit 1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042569 [exp] 469 / 1e-164 AT1G10095 387 / 2e-132 Protein prenylyltransferase superfamily protein (.1) Lus10022027 [exp] 409 / 4e-141 AT1G10095 320 / 3e-106 Protein prenylyltransferase superfamily protein (.1) Lus10031441 [exp] 54 / 1e-07 AT4G24490 667 / 0.0 RAB geranylgeranyl transferase alpha subunit 1 (.1.2) Lus10001518 [exp] 54 / 1e-07 AT4G24490 630 / 0.0 RAB geranylgeranyl transferase alpha subunit 1 (.1.2) Lus10022404 [exp] 50 / 4e-06 AT4G24490 656 / 0.0 RAB geranylgeranyl transferase alpha subunit 1 (.1.2) Lus10015954 [exp] 48 / 7e-06 AT3G59380 414 / 1e-145 PLURIPETALA, farnesyltransferase A (.1) Lus10000763 [exp] 47 / 2e-05 AT3G59380 421 / 1e-147 PLURIPETALA, farnesyltransferase A (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.013G047100.5 pacid=42811176 polypeptide=Potri.013G047100.5.p locus=Potri.013G047100 ID=Potri.013G047100.5.v4.1 annot-version=v4.1 ATGAGAAAAGAATCTATGATTTTGAAAGGAAACAGTTTGAGTCTTTTGAATGAATTTGAGCTCATTCTGGAGTCTGATCCTCTCATTGATGAAGTAGGAT TTATTCACCCATCCCAATTTGTCACATTAAATAAAGAAGCGAGCAGCTCCTTGGAACATGAAGATGCAAATTTTTGGAGCAGGGATCATAAGCTTGCAAT TTCGACAGATGTTCTCCTTCCTTTGTATAAGGCGGTCAAAGATGTGTTTATGCATGCAATTAGCCAATATAAGAGGCATGAGAATCTATCTGATGCATCT TGGGATGAGGGTAATCTTGAAAGTGAGGTCATGAAGCACAGCAAGGCGCTTTTATTGTTAAGCTGTGACTTTGGGACTGCATGGAATTTCAGGAAGTTAA TTGTGTCAAAGAAGCAGCATATGTTGATATTTTTGGATGAACTTTTCTTGTCGGCCCTAGTCCTTTCATACTCTCCCAAAAGTGAAAAGGCATGGTGCCA CAGGCGGTGGGTGATCAAGATGGTTGCTGGAAAATGTTCAACTATGCAAGATATTGTAGGGAAAGAATCTGAGCTAGTGGAGAAAATAGCTGAGAGATCA AAAATGAATTATCGTGCATGGAATCATCGTTGCTGGTTAGTTTCATACATGACAACAGAACAGGTGCTGCATGAGTTGAAGAAATCCAGAAACTGGGCTG GATTACATGTTGCTGATAATTCTTGCTTTCATTATCGCACTCGGCTGATGCTCAGGATCAGGGAGGATCACTGCCATAAACTAGAAGATGGAACATCTGA TGGAAATGATGAAATTTATCGAATCTGGCAGGAGGAGCTTGATTGGAATGAAGCATTGATTAAGTGTTATGTAGGAAGAGAGGCTTTGTGGCTTCATCGT CGTTTCCTCTCCTTGTCTTGGATAAGGCATTTCACAACTAATCTTGGTGACACATCTAACTACCGTGTATGTAAATCCAGCGTAAATGCTGACATTGGTA TCTTTATGGATAATGAGTTGCATCTCGCAAATTCCTGCTCAACAATACCCGATAATGAGTTTGAGGATTTTCAAGCACAGGCAATATATTGCGCAACTTA CATATTATGGCTGACAAAGGTACAAATCTCCGATTCCCAGGGAATTGAGCTCCAAGAAAAGCCAAATCTTGGAAGCCTGAAGACCGTGCTGAATATGGCA TGTCCTGAAAGATCATTTCTTTCGGACATCTCAACAGGGATAACTGGGAAGTGTGACGAGGGTTTGAAGGAGAACAGATATCAACTTCGATAG
AA sequence Show only first row Show all	>Potri.013G047100.5 pacid=42811176 polypeptide=Potri.013G047100.5.p locus=Potri.013G047100 ID=Potri.013G047100.5.v4.1 annot-version=v4.1 MRKESMILKGNSLSLLNEFELILESDPLIDEVGFIHPSQFVTLNKEASSSLEHEDANFWSRDHKLAISTDVLLPLYKAVKDVFMHAISQYKRHENLSDAS WDEGNLESEVMKHSKALLLLSCDFGTAWNFRKLIVSKKQHMLIFLDELFLSALVLSYSPKSEKAWCHRRWVIKMVAGKCSTMQDIVGKESELVEKIAERS KMNYRAWNHRCWLVSYMTTEQVLHELKKSRNWAGLHVADNSCFHYRTRLMLRIREDHCHKLEDGTSDGNDEIYRIWQEELDWNEALIKCYVGREALWLHR RFLSLSWIRHFTTNLGDTSNYRVCKSSVNADIGIFMDNELHLANSCSTIPDNEFEDFQAQAIYCATYILWLTKVQISDSQGIELQEKPNLGSLKTVLNMA CPERSFLSDISTGITGKCDEGLKENRYQLR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G10095			Protein prenylyltransferase su...		Potri.013G047100 [exp]	0	1
AT1G15215		SHH1, DTF1	SAWADEE homeodomain homolog 1,...		Potri.001G189200 [exp]	1.00	0.7782
AT1G01760			adenosine deaminases;RNA bindi...		Potri.014G081400 [exp]	5.47	0.7034
AT4G18240		ATSS4, SSIV	ARABIDOPSIS THALIANA STARCH SY...		Potri.018G149500 [exp]	5.65	0.7204
AT3G13440			S-adenosyl-L-methionine-depend...		Potri.003G157201 [exp]	6.24	0.6675
					Potri.006G177250 [exp]	7.87	0.7524
AT3G45880			2-oxoglutarate (2OG) and Fe(II...		Potri.001G233200 [exp]	11.09	0.7366
					Potri.001G149001 [exp]	34.32	0.6170
AT5G04040		SDP1	SUGAR-DEPENDENT1, Patatin-like...		Potri.016G041000 [exp]	45.16	0.6416
AT3G10250			Plant protein 1589 of unknown ...		Potri.016G038100 [exp]	45.98	0.6839
AT3G55080			SET domain-containing protein ...		Potri.008G047400 [exp]	52.00	0.6652

Compare expression of checked genes

Potri.013G047100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.