Plant FIBer expression Database

Potri.013G047400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G04480 944 / 0 endoribonucleases (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.019G019600
[exp]
1393 / 0 AT3G04480 941 / 0.0 endoribonucleases (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10008194
[exp]
1016 / 0 AT3G04480 861 / 0.0 endoribonucleases (.1)
Lus10027962
[exp]
983 / 0 AT3G04480 840 / 0.0 endoribonucleases (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0534 YjgF-like PF01042 Ribonuc_L-PSP Endoribonuclease L-PSP
CL0039 HUP PF01902 Diphthami_syn_2 Diphthamide synthase
Representative CDS sequence
>Potri.013G047400.1 pacid=42811678 polypeptide=Potri.013G047400.1.p locus=Potri.013G047400 ID=Potri.013G047400.1.v4.1 annot-version=v4.1
ATGAAGGTGGTAGCTCTAGTAAGCGGCGGCAAGGATAGTTGTTATGCCATGATGAAGTCCATCCAATATGGCCATGAAATTGTTGCATTGGCAAATTTGA
TGCCTGCTGATGATTCGGTTGATGAGTTAGATAGCTTCATGTATCAAACTGTCGGGCACCAAATAATTGTCAGCTATGCAGAATGCATGGGATTGCCATT
ATTCAGAAGGCGGATACAAGGATCCACAAGGCATCAAACACTTAACTACAAGACAACGCCAGGTGATGAAGTCGAAGATATGTTCATTTTGTTGAATGAA
GTCAAAAGACAGATTCCCTCTATTACGGCAGTATCCTCTGGTGCTATTGCATCGGACTACCAGAGGTTACGAGTGGAAAGTGTTTGTTCAAGGTTAGGGC
TTGTTTCTCTAGCGTATTTGTGGAAACAAGATCAGTCGTTGCTCCTTCAAGAAATGATAACAAATGGGATTTTGGCTATTACTGTAAAGGTAGCAGCCAT
CGGTTTAGACCCTGCAAAGCACTTGGGCAAAGAAATAGCGTTCTTGACCGCCCATCTGCATAAGTTGAAAGAGTTGTATGGGATAAATGTATGTGGTGAA
GGAGGAGAATATGAAACACTGACGCTTGACTGTCCACTTTTCGTAAATGCCAGAATTGTGCTCGATGAATTTCAAACTGTACTACACTCTCCAGGTTCTA
TAGCTTCTGTTGGGGTCATTCATCCTTTGGCATTTCATTTGGAAAATAAGGACACAGTCATTTCATTAGATAATGACAAAGCCAGTGATTCCTCTCTGGA
AAAAAAGGGTTCTGTGTTTGTAGTGCAAGGAGATTTCCCACAAAGAAGCCAGGCTACATGCCAGTCTAATTCTGAAACAACTAATTTAGTTGAAGTTAGA
GATGATAGAATTTACATCTCTAAAACAAAGAAGGATAATATATTTTCCATTTGTTGCTGGTTGCAAGATTCATGCAAAACTTCAGCAGGTTCCCATGAAG
ATCTAGCAGTTGTTCTGAAGCACATTGAATCACAGCTTGCAGGATATGGTTTTGGCTGGGAGCATGTCCTATATATTCATCTTTATATTGCTGATATGAA
TGAGTTTGCTACAGTAAATGAGACATATGTGAGATTCATTACCCAGGAAAAGTGCCCTTTTGGTGTTCCATCTCGCAGCACAATAGAACTACCTTTGTTG
CAAGCGAGTTTGGGGAGAGCTTATATTGAAGTTCTAGTGGCAAATGATAACAGCAAAAATGTGTTGCATGTGCAAAGTATTTCCTCTTGGGCACCCAGTT
GCATCGGGCCATATAGCCAGGCAACCTTGCATAAGGAGATACTACACATGGCTGGACAGTTGGGGTTGGACCCGCCCACTATGATGCTATGCAATGGAGG
TCCCTCTGCTGAGCTGGAACAAGCACTAGGAAACAGTGAAGCAGTGGCAAATGTCTTTAACTGCTCAGTATCTACCTCTGCTATTGTTTTGACCATTTAC
TGTTCAGCAGATACTCCGCTGCCAGAAAGACTTAAGATCCAGGAGAAGCAGGACTCTTTCTTAAAGCAAATGAGACTGCTGCAATTAGATAAAGGAAGCA
AGTGCAAAATTCTTGATCCAATATTTCTATATGTTCTTGTGCCTGATCTTCCAAAAAGGGCATTTGTAGAAGTTAAACCCATTCTTTTCGTCCCAGAAGA
TGCAGAAACAGCAGTTACAAGCGTTCAAAACCCGTCCTCTTTTACAGTTGCTAATCGCTGGGGATTTCAGCATGCACAGTGGCATGATTCTTGCATTCAG
AAATGTGTTGTTAGTGGGAAGATATGTGCGATTATTTTGTCTATTACAGAAAATATTGTTGTGAAGATCTGCTCGGAGTCTCTTGGTGTCAATGATGAAG
ACGTGGATCATCAAAATTCTGTCTCGAAGGGGCATATGGAAAGAGTTTTAAGATTTTGTGTTTATCTTCTTGATAAAGTGATTATGGAGAACGGTTTTTC
TTGGGAAGACACAATGAATTTAAGGACCTACTTCCCAACAGCCAGCGGTATTCCACTGGAGACATTGTCACTAGCATTAAAAAATGCCATGAATGAACTT
GCCGAGATGGACCAGAGGGTTCAAGTTGGGAAAGAACCCATATATAACATTGTTCCAGTATTAGCTGCTGGGAGCTCTGCTGCGTCAATGAATAATATAA
TCACGTGTGAACTATTTGCTCGGAAATCTTGA
AA sequence
>Potri.013G047400.1 pacid=42811678 polypeptide=Potri.013G047400.1.p locus=Potri.013G047400 ID=Potri.013G047400.1.v4.1 annot-version=v4.1
MKVVALVSGGKDSCYAMMKSIQYGHEIVALANLMPADDSVDELDSFMYQTVGHQIIVSYAECMGLPLFRRRIQGSTRHQTLNYKTTPGDEVEDMFILLNE
VKRQIPSITAVSSGAIASDYQRLRVESVCSRLGLVSLAYLWKQDQSLLLQEMITNGILAITVKVAAIGLDPAKHLGKEIAFLTAHLHKLKELYGINVCGE
GGEYETLTLDCPLFVNARIVLDEFQTVLHSPGSIASVGVIHPLAFHLENKDTVISLDNDKASDSSLEKKGSVFVVQGDFPQRSQATCQSNSETTNLVEVR
DDRIYISKTKKDNIFSICCWLQDSCKTSAGSHEDLAVVLKHIESQLAGYGFGWEHVLYIHLYIADMNEFATVNETYVRFITQEKCPFGVPSRSTIELPLL
QASLGRAYIEVLVANDNSKNVLHVQSISSWAPSCIGPYSQATLHKEILHMAGQLGLDPPTMMLCNGGPSAELEQALGNSEAVANVFNCSVSTSAIVLTIY
CSADTPLPERLKIQEKQDSFLKQMRLLQLDKGSKCKILDPIFLYVLVPDLPKRAFVEVKPILFVPEDAETAVTSVQNPSSFTVANRWGFQHAQWHDSCIQ
KCVVSGKICAIILSITENIVVKICSESLGVNDEDVDHQNSVSKGHMERVLRFCVYLLDKVIMENGFSWEDTMNLRTYFPTASGIPLETLSLALKNAMNEL
AEMDQRVQVGKEPIYNIVPVLAAGSSAASMNNIITCELFARKS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G04480 endoribonucleases (.1) Potri.013G047400
[exp]
0 1
AT3G20630 PER1, ATUBP14, ... TITAN6, phosphate deficiency r... Potri.001G408800
[exp]
4.79 0.8888 Pt-UBP14.2
AT5G06060 NAD(P)-binding Rossmann-fold s... Potri.010G199700
[exp]
5.19 0.8880
AT3G47570 Leucine-rich repeat protein ki... Potri.008G007866
[exp]
8.00 0.9263
AT1G25350 OVA9 ovule abortion 9, glutamine-tR... Potri.010G122866
[exp]
9.16 0.8898
AT5G36930 Disease resistance protein (TI... Potri.013G096923
[exp]
10.48 0.9100
AT3G22400 ATLOX5, LOX5 Arabidopsis thaliana lipoxygen... Potri.008G151500
[exp]
10.67 0.9084 LOX1.8
AT5G01510 RUS5 ROOT UV-B SENSITIVE 5, Protein... Potri.006G099700
[exp]
10.95 0.8599
AT5G40840 SYN2, ATRAD21.1 Sister chromatid cohesion 1 \(... Potri.017G067400
[exp]
11.66 0.8935 SYN2.1
AT1G63855 Putative methyltransferase fam... Potri.005G109000
[exp]
13.63 0.8669
AT1G77670 Pyridoxal phosphate (PLP)-depe... Potri.014G124100
[exp]
15.49 0.9020

Potri.013G047400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.