Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04470 880 / 0 Ankyrin repeat family protein (.1) AT1G04780 649 / 0 Ankyrin repeat family protein (.1) AT3G24210 592 / 0 Ankyrin repeat family protein (.1) AT1G62050 360 / 7e-116 Ankyrin repeat family protein (.1) AT1G11740 333 / 4e-105 ankyrin repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G019700 [exp] 1091 / 0 AT3G04470 883 / 0.0 Ankyrin repeat family protein (.1) Potri.001G051400 [exp] 671 / 0 AT1G04780 907 / 0.0 Ankyrin repeat family protein (.1) Potri.003G177000 [exp] 662 / 0 AT1G04780 862 / 0.0 Ankyrin repeat family protein (.1) Potri.004G013500 [exp] 340 / 1e-108 AT1G62050 558 / 0.0 Ankyrin repeat family protein (.1) Potri.011G004500 [exp] 339 / 4e-108 AT1G62050 588 / 0.0 Ankyrin repeat family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029612 [exp] 918 / 0 AT3G04470 857 / 0.0 Ankyrin repeat family protein (.1) Lus10008195 [exp] 909 / 0 AT3G04470 878 / 0.0 Ankyrin repeat family protein (.1) Lus10011743 [exp] 639 / 0 AT1G04780 852 / 0.0 Ankyrin repeat family protein (.1) Lus10000752 [exp] 630 / 0 AT1G04780 863 / 0.0 Ankyrin repeat family protein (.1) Lus10032775 [exp] 491 / 8e-167 AT3G04470 698 / 0.0 Ankyrin repeat family protein (.1) Lus10027960 [exp] 459 / 3e-157 AT3G04470 412 / 3e-139 Ankyrin repeat family protein (.1) Lus10027961 [exp] 407 / 2e-139 AT3G04470 409 / 3e-141 Ankyrin repeat family protein (.1) Lus10002942 [exp] 335 / 7e-107 AT1G62050 707 / 0.0 Ankyrin repeat family protein (.1) Lus10003524 [exp] 212 / 1e-61 AT1G62050 531 / 0.0 Ankyrin repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11904 [poplar] [flax] GPCR_chapero_1 GPCR-chaperone CL0465 [poplar] [flax] Ank PF13857 [poplar] [flax] Ank_5 Ankyrin repeats (many copies)
Representative CDS sequence Show only first row Show all	>Potri.013G047500.2 pacid=42810880 polypeptide=Potri.013G047500.2.p locus=Potri.013G047500 ID=Potri.013G047500.2.v4.1 annot-version=v4.1 ATGGAAGATTTGTCCAAGTTTGCTCATAGTCCTGCCCATTTGGCAGTTGCATGCCGAGATTATGCTACCCTTAGGCAAGTTATCTCAGCCCTCCCACGTC TTGCCAAGGCTGGTGAAGTCAATACTGAAGAAGAGTCTCTTGTTGCTGAGCAACAGGCGGATTCTGTCTCTGCTGTCATTGACCGCCGGGATGTTCCTGG CAGAGAAACTCCTTTGCACCTTGCTGTCAGGCTGCGGGATCCAATCTCCGCTGAGATTTTAATGGCAGCCGGTGCTGATTGGAGTCTGCAGAATGAGAAT GGCTGGAGTGCACTTCAAGAAGCAGTTTGCACGAGAGAGGAGACAATCGCCATGATAATTGCTCGGCATTACCAGCCTCTTGCTTGGGCAAAATGGTGTC GAAGGCTCCCGCGGATTGTTGCTTCAGCAGCTCGTATTCATGATTTTTATATGGAGATAACTTTTCATTTTGAGAGTTCTGTCATCCCATTTATTGGTCG TATTGCCCCGTCAGATACTTACCGCATTTGGAAGCGTGGTTCTAACCTCCGTGCTGATATGACTCTTGCTGGCTTTGATGGTTTTCGCATTCAGAGGTCA GATCAAACATTTCTATTTCTCGGGGAGGGATACTCTTCAGAGGATGGCAATATATCTTTGGCACCAGGTTCTTTGGTTGTTCTTGCCCATAAGGAAAAGG AGGTTACAAATGCTTTGGAGGGGGCTGGTGCCCAACCAACTGAAGCAGAAGTTGCCCATGAAGTGGCTTTGATGTCTCAAACTAATATGTATAGGCCAGG CATTGACGTCACTCAAGCAGAGCTTGTTCCACATTTGAATTGGAGGCGGCAAGAGAGGACAGAAATGGTTGGAAATTGGAAGGCCAAAGTTTATGACATG CTTCATGTTATGGTCAGTGTGAAGTCAAGACGGGTTCCTGGTGCTATGACTGATGAGGAGCTTTTTGCGGTGGATGATGAAGAGAGATTAGGAAATGTTG CTGAAAATGATGAGTTTGATGATGTGTTGACTGCTGAGGAGAGGAAACAGTTAGATTCTGCACTTCGTACGGGGAACTCGGATGGTGTTGGTGATGATGA GGAACCTAGTGTTGAGCACCAAGAAAATGGCCCTGGAGGAATCTTTGAAAATGGCGACTCTAATGGTTCTATTAAGGAGAAGAAGAGTTGGTTTGGTTGG AAGAACAAAGGTTCAAAGAACACTAGTGATGATCCTGAAGATTCAAAGATCTTGAAAAAATTTTCAAAATTAGCACCAGAAGGTGGCACCCAGAAACCTG TTGATCATCAAAAATCATCTGAATCTGCTAGGGAGGATATGGCTGATGCCAAGAAAGGAAAAGATAAAAGCAGCAAGAAGAAGAAGAAGAAAGGGCCCAG TAGCGAATCTAAGCATGAGAGTGAGTACAAGAAGGGTTTGAGACCTGTCTTGTGGCTCACACCAGATTTTCCTTTGAAAACTGAGGAGCTCCTGCCTTTA CTTGACATATTAGCCAACAAAGTCAAGGCTATTAGGAGACTCAGAGAGCTTTTGACAACAAAACTTCCCCTGGGAACATTTCCTGTCAAGGTTGCCATCC CTATTGTCCCAACTATTCGGGTGCTTGTTACTTTTACAAAATTTGAGGAGCTACAGCCATCAGAAGAATTCTCAACACCTCTCTCCAGCCCAGCTCATTT CCAGGAGGCGAAGTCCAAGGAATCTGAAGGGGCTTCATCGTGGATTTCATGGATGAGGGGGAGTCGAGGTGGGCAATCAAGTGATAGTGATAGTCACCGG TACAAGGATGAGATTGATCCTTTCCTCATACCAGCAGACTATACTTGGGTTGATGCCACTGAGAAGAAACGCCGCATGAAAGCCAAGAAAGCCAAGAACA AGAAACACAGGAAACAAGCTGCAGCCAGAGGTGAGGAAGGGCGGGCACAACATTTGAGTGAAGATGTGGAAGAATAA
AA sequence Show only first row Show all	>Potri.013G047500.2 pacid=42810880 polypeptide=Potri.013G047500.2.p locus=Potri.013G047500 ID=Potri.013G047500.2.v4.1 annot-version=v4.1 MEDLSKFAHSPAHLAVACRDYATLRQVISALPRLAKAGEVNTEEESLVAEQQADSVSAVIDRRDVPGRETPLHLAVRLRDPISAEILMAAGADWSLQNEN GWSALQEAVCTREETIAMIIARHYQPLAWAKWCRRLPRIVASAARIHDFYMEITFHFESSVIPFIGRIAPSDTYRIWKRGSNLRADMTLAGFDGFRIQRS DQTFLFLGEGYSSEDGNISLAPGSLVVLAHKEKEVTNALEGAGAQPTEAEVAHEVALMSQTNMYRPGIDVTQAELVPHLNWRRQERTEMVGNWKAKVYDM LHVMVSVKSRRVPGAMTDEELFAVDDEERLGNVAENDEFDDVLTAEERKQLDSALRTGNSDGVGDDEEPSVEHQENGPGGIFENGDSNGSIKEKKSWFGW KNKGSKNTSDDPEDSKILKKFSKLAPEGGTQKPVDHQKSSESAREDMADAKKGKDKSSKKKKKKGPSSESKHESEYKKGLRPVLWLTPDFPLKTEELLPL LDILANKVKAIRRLRELLTTKLPLGTFPVKVAIPIVPTIRVLVTFTKFEELQPSEEFSTPLSSPAHFQEAKSKESEGASSWISWMRGSRGGQSSDSDSHR YKDEIDPFLIPADYTWVDATEKKRRMKAKKAKNKKHRKQAAARGEEGRAQHLSEDVEE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G04470			Ankyrin repeat family protein ...		Potri.013G047500 [exp]	0	1
AT2G46900			unknown protein		Potri.002G183500 [exp]	2.82	0.8102
AT4G11740		SAY1	Ubiquitin-like superfamily pro...		Potri.001G109500 [exp]	5.65	0.8016
AT3G06270			Protein phosphatase 2C family ...		Potri.010G028300 [exp]	10.72	0.7995
AT1G04780			Ankyrin repeat family protein ...		Potri.003G177000 [exp]	11.61	0.7632
AT5G08139			RING/U-box superfamily protein...		Potri.012G065300 [exp]	12.44	0.7592
AT3G10760	GARP		Homeodomain-like superfamily p...		Potri.006G034900 [exp]	12.80	0.8034
AT1G13190			RNA-binding (RRM/RBD/RNP motif...		Potri.008G182500 [exp]	13.85	0.7824
AT1G33240	Trihelix	AT-GTL2, AT-GTL...	GT2-LIKE 1, GT-2-like 1 (.1)		Potri.001G454500 [exp]	15.49	0.7835
AT2G01060	GARP		myb-like HTH transcriptional r...		Potri.016G001100 [exp]	21.63	0.7653
AT1G12530			unknown protein		Potri.003G118900 [exp]	24.65	0.7741

Compare expression of checked genes

Potri.013G047500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.