Plant FIBer expression Database

Potri.013G047600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G28910 668 / 0 unknown protein
AT5G28960 643 / 0 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.019G019800
[exp]
1004 / 0 AT5G28910 680 / 0.0 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10027959
[exp]
790 / 0 AT5G28910 702 / 0.0 unknown protein
Lus10008196
[exp]
773 / 0 AT5G28910 695 / 0.0 unknown protein
PFAM info
Representative CDS sequence
>Potri.013G047600.9 pacid=42812424 polypeptide=Potri.013G047600.9.p locus=Potri.013G047600 ID=Potri.013G047600.9.v4.1 annot-version=v4.1
ATGAATACGGAGCCACTGAACCAGAAATCTCTTGAGAGAGTGGTGTCACAGAAAGCTTTACAAATTGGCAGTTCATTTCCATGTCAAATTTGTGTGGTGG
GTTTTCTTAGTGGAGTTTGTCTCACCTCTTTGTTTTTGGCTGCTCTTACTTCACTGGGGACTTTTGAGTTTGGTGGCATTTCATTTTCTTCCATCTCTCT
GGGAAATTCTCCTTTGAATTCTTCAAGTTCTGGGTTTTTCAATACAGTTACAAGTGCAGACTGCAAATTTAAAAGAAAGGAAATCTTTACAGAGAGGTGG
GTTGACTCAAAGAGAAGTGAAAATGGGGTCGATGATGAGAGAGTTTCATTATTACATTCAGCTTGGAGTGCCTTACTATCCGAATCAGTAGATGGAGAAA
TTGCATTCTGGCAAAGTTCCGGACTTGGGAAATCTGCCGTGCCAAATGCCCCTCATTTGGAGAACTGCAAGTTGAGTGAACAAATAAATGAACATCTTGA
TAAGCGTGCTGAGAATGAGAGGCTTCCTCCTTGGACAACTTGGAAGGGATTATTAAACGCACACCCTGCATCTATGCCCACTGAGCAACTGAGGTACTTT
AGGCATCAAGCAATACCTGAAGGTGCTTATCCTCCCTGGATTACTGGATCGGATGAAGAAAACTATCCTCTTACTAGGAAAGTGCAGCGTGACATATGGC
TCCATCAGCATCCTGAGAACTGCAGGGATCCTAATATAAGATTTCTGGTTGCTGAGTGGGAGAGGTTACCTGGTTTTGGTATTGGAGCTCAGCTAGCTGG
AATGTGTGGGCTTCTTGCTATTGCAATCAATGAGAAAAGAGTCCTTGTTACCAGCTACTATAATCGAGCCGACCATGATGGTTGTAAAGGTTCTTTGCGC
TCCAGTTGGTCTTGCTACTTTTTTCCAGAAACATCCCAAGAATGTCGAGATCATGCTTTTGAGCTAATGGGTAATAAAGAAGCATTGGAAAGGGGAATGG
TAACTACAAAAGACAATTACACATCAAAAGAAATATGGACTGGACGGACTCCAAGGGTATGGGGCGAACCGTGGAGGTTCTTGCAACCAACAACAGAAAT
AAATGGGAGTTTGGTTGCGTCTCATCGTAAAATGGATCGAAGATGGTGGAGAGCACAGGCAATACGCTACTTGATGAGATTTCAAACTCCGTATATGTGC
GGTTTGATGAATGTTGCCCGAAATGCTGCTTTTGGGAAGGAAGTTGCAAAGATGTTTCTTACAAGTCTCGGCAAGGAATGGCCAAAGGATTTTGGGAACA
AGAGAAGGTCAGATATTGAAGAGTTTGTATGGTCCAATCACAGACCATGGATTCCTAGGCCATTGTTGAGCATGCATGTAAGAATGGGAGACAAGGCATG
TGAGATGAAGGTAGTTGAGTTTGAAGGTTACATGCATCTTGCTGAGCGGATCAGGCAGCGTTTCCCACAACTCAAGAGCGTTTGGCTATCAACTGAAATG
CAGGAAGTTATCAACAAGTCGAAGCTATACACGAACTGGAATTTCTACTACACGAATGTAACACGCCAAGTTGGGAACGCGACAATGGCCGCATATGAGG
CAAGTCTGGGCAGGAAAACCAGCACAAACTATCCCCTTGTTAATTTCTTGATGGCAGCAGAAGCTGACTTTTTCGTCGGAGCATTGGGTTCAACATGGTG
CTTTCTCATAGATGGCATGAGGAATACTGGAGGGAAAGTAATGGCAGGTTACTTGAGCGTCAACAAAGATCGGTTCTGGTAG
AA sequence
>Potri.013G047600.9 pacid=42812424 polypeptide=Potri.013G047600.9.p locus=Potri.013G047600 ID=Potri.013G047600.9.v4.1 annot-version=v4.1
MNTEPLNQKSLERVVSQKALQIGSSFPCQICVVGFLSGVCLTSLFLAALTSLGTFEFGGISFSSISLGNSPLNSSSSGFFNTVTSADCKFKRKEIFTERW
VDSKRSENGVDDERVSLLHSAWSALLSESVDGEIAFWQSSGLGKSAVPNAPHLENCKLSEQINEHLDKRAENERLPPWTTWKGLLNAHPASMPTEQLRYF
RHQAIPEGAYPPWITGSDEENYPLTRKVQRDIWLHQHPENCRDPNIRFLVAEWERLPGFGIGAQLAGMCGLLAIAINEKRVLVTSYYNRADHDGCKGSLR
SSWSCYFFPETSQECRDHAFELMGNKEALERGMVTTKDNYTSKEIWTGRTPRVWGEPWRFLQPTTEINGSLVASHRKMDRRWWRAQAIRYLMRFQTPYMC
GLMNVARNAAFGKEVAKMFLTSLGKEWPKDFGNKRRSDIEEFVWSNHRPWIPRPLLSMHVRMGDKACEMKVVEFEGYMHLAERIRQRFPQLKSVWLSTEM
QEVINKSKLYTNWNFYYTNVTRQVGNATMAAYEASLGRKTSTNYPLVNFLMAAEADFFVGALGSTWCFLIDGMRNTGGKVMAGYLSVNKDRFW

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G28910 unknown protein Potri.013G047600
[exp]
0 1
AT1G70210 ATCYCD1;1, CYCD... CYCLIN D1;1 (.1) Potri.014G005900
[exp]
3.00 0.6121
AT5G57970 DNA glycosylase superfamily pr... Potri.006G184700
[exp]
12.32 0.5614
AT4G02600 MLO1, ATMLO1 MILDEW RESISTANCE LOCUS O 1, S... Potri.013G069900
[exp]
17.49 0.5311
AT1G78700 BZR BEH4 BES1/BZR1 homolog 4 (.1) Potri.011G106800
[exp]
24.81 0.5627
AT3G08510 ATPLC2 phospholipase C 2 (.1.2.3) Potri.010G188800
[exp]
28.72 0.5225 Pt-PLC1.1
AT1G55150 DEA(D/H)-box RNA helicase fami... Potri.019G130900
[exp]
31.11 0.5571 Pt-P68.1
AT3G24110 Calcium-binding EF-hand family... Potri.001G314900
[exp]
36.94 0.5483
AT1G80530 Major facilitator superfamily ... Potri.003G012300
[exp]
40.36 0.5592
AT4G36470 S-adenosyl-L-methionine-depend... Potri.007G021400
[exp]
72.86 0.4901
AT2G30720 Thioesterase/thiol ester dehyd... Potri.017G009800
[exp]
73.67 0.4900

Potri.013G047600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.