Plant FIBer expression Database

Potri.013G047700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G04030 147 / 1e-39 unknown protein
AT5G44040 111 / 9e-27 unknown protein
AT2G33400 48 / 7e-06 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G258501
[exp]
149 / 2e-40 AT1G04030 172 / 1e-48 unknown protein
Potri.010G067300
[exp]
64 / 4e-11 AT2G33400 79 / 1e-16 unknown protein
Potri.002G057000
[exp]
61 / 6e-10 AT1G06660 325 / 7e-106 JASON, unknown protein
Potri.008G170600
[exp]
57 / 6e-09 AT2G33400 69 / 2e-13 unknown protein
Potri.005G205700
[exp]
55 / 5e-08 AT1G06660 275 / 6e-87 JASON, unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10003613
[exp]
110 / 2e-26 AT1G04030 211 / 1e-63 unknown protein
Lus10029611
[exp]
102 / 4e-24 AT1G04030 61 / 3e-10 unknown protein
Lus10008231
[exp]
97 / 1e-21 AT1G04030 202 / 1e-59 unknown protein
Lus10032776
[exp]
81 / 8e-17 AT5G44040 59 / 7e-10 unknown protein
Lus10020732
[exp]
52 / 9e-07 AT1G06660 310 / 1e-100 JASON, unknown protein
Lus10011782
[exp]
47 / 1e-05 AT2G33400 83 / 3e-18 unknown protein
Lus10023739
[exp]
47 / 1e-05 AT2G33400 95 / 1e-22 unknown protein
Lus10001417
[exp]
44 / 0.0002 AT1G06660 228 / 3e-69 JASON, unknown protein
PFAM info
Representative CDS sequence
>Potri.013G047700.1 pacid=42811277 polypeptide=Potri.013G047700.1.p locus=Potri.013G047700 ID=Potri.013G047700.1.v4.1 annot-version=v4.1
ATGGGCTGCTCCCTTTTCGCTTGTTTCACTGCTTGTAAGCATAGAAAATGTAGACATTTGGTGAATGTAACTCCATCTAAACCTCATGATGATGGAGCTA
CTGAACCTTCGAAAGTTCATGAACCCAAAAAGCAAGAGGGAGTTCCTCAGGTGCCCATTGAGCCCATTTTGGAATCAAAAGAGAATCTTGAGGAGCAAAT
GAGCTGCAATGAGAAAAAGAAATTGACTTTTAATTTGAATGTCGAAACCTACGAGGGTTTATTTACTGATGAAGAAGTTATCAACAACGTAGTAGAGTAC
AAAGAAGAAGAGAGAGAGTCTGAAAACAAAGAAGAAGAACCATCAAACGTGAACAAATCAGTTACTAACGTGGTTGCATCAAATGTCGGATGTTATCCTC
CAAATAACAGATATCAAAATCGTGTTGACGAAGAAGATTATGAAGATTTGGACTTGGAAGCTAGTGATTTGAATGATGCTGTTCAAGTATTGATTCAAGA
AGAGTCATCCGAGTCTTTGTTTTCATTATCAATTGATTCAAGAAAACAGGTGTATGGAGCTGAATTGGGTGAAAAGGAGGTTACTAGTCCCATGCCAAAA
GGTGAATCACCACCTAAGGAGGAGCCTAAGCTAGTGGGGTCCAATCAAAATGCTCGAGTTAGGAGTCGGCTTGATGACAACGTTCTGAATCCAGTAGAAA
ATCTAACTCAATGGAAAGTAGCCAAAGCAAGAGCAACCTCACCATGGCAGCATGAAGACAAGGAAAATGTCAATGTAGAGCAAGATTTTGACAAGAACAT
TAGTCCGGAGACTATTTTCAAGTTGTACAGAAAAGATTCAAAAGAGAATCCCAAGCAGAAGAAGCTGGTGGATCAAGAAATTGCAGTGGATACTAGCCTA
TCAAGTTGGTTGGCCACACCGCCCATGTCCAAGGGTAGCCCTAGTTCTGTTGGGAACTCACCATCTGCAAGGAGTTGTTCGCCAAGAAGTCATGAAGATA
GGCCTATTTTAGGAGCATTGACAGTTGAGGATCTTGAACAACATTCTGCTTCTAATACTCCAAGACGGTCGAGGAGTTTGACTCCTGTCGAAACTCCTCT
TACAGGGACTGTTGGAAGCTACTGGATTCATACTGGACGGGTTGTGGAATCAGATTCAGGCTCTTCCAGCAAAGGAATGCTTAGAACAAAAAAAGTAGAG
GATGAGAAGATGAAATGGAATTCTATTCCATTCGAGGAAAGATTGGACAGAGCTTTGGAAGGAGCCATTGCTCAAGTGTAG
AA sequence
>Potri.013G047700.1 pacid=42811277 polypeptide=Potri.013G047700.1.p locus=Potri.013G047700 ID=Potri.013G047700.1.v4.1 annot-version=v4.1
MGCSLFACFTACKHRKCRHLVNVTPSKPHDDGATEPSKVHEPKKQEGVPQVPIEPILESKENLEEQMSCNEKKKLTFNLNVETYEGLFTDEEVINNVVEY
KEEERESENKEEEPSNVNKSVTNVVASNVGCYPPNNRYQNRVDEEDYEDLDLEASDLNDAVQVLIQEESSESLFSLSIDSRKQVYGAELGEKEVTSPMPK
GESPPKEEPKLVGSNQNARVRSRLDDNVLNPVENLTQWKVAKARATSPWQHEDKENVNVEQDFDKNISPETIFKLYRKDSKENPKQKKLVDQEIAVDTSL
SSWLATPPMSKGSPSSVGNSPSARSCSPRSHEDRPILGALTVEDLEQHSASNTPRRSRSLTPVETPLTGTVGSYWIHTGRVVESDSGSSSKGMLRTKKVE
DEKMKWNSIPFEERLDRALEGAIAQV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G04030 unknown protein Potri.013G047700
[exp]
0 1
AT3G51280 Tetratricopeptide repeat (TPR)... Potri.007G056500
[exp]
3.74 0.9286
AT1G03780 AtTPX2, TPX2 targeting protein for XKLP2 (.... Potri.007G138600
[exp]
5.47 0.9007
AT1G44110 CYCA1;1 Cyclin A1;1 (.1) Potri.005G181400
[exp]
6.63 0.9151
AT1G69530 ATHEXPALPHA1.2,... EXPANSIN 1, expansin A1 (.1.2.... Potri.008G088300
[exp]
6.70 0.8625 PtEXPA4,EXPA1.2
AT3G03620 MATE efflux family protein (.1... Potri.015G139400
[exp]
7.34 0.8517
AT3G03620 MATE efflux family protein (.1... Potri.015G139500
[exp]
7.54 0.8590
AT3G26050 TPX2 (targeting protein for Xk... Potri.010G053200
[exp]
15.87 0.8859
AT4G28230 unknown protein Potri.019G116200
[exp]
20.78 0.8594
AT2G17620 CYCB2;1 Cyclin B2;1 (.1) Potri.005G100000
[exp]
21.21 0.8961 Pt-CYCMS1.1
AT1G02730 SOS6, ATCSLD5 SALT OVERLY SENSITIVE 6, CELLU... Potri.014G125100
[exp]
21.54 0.8987 ATCSLD5.1

Potri.013G047700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.