Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04380 469 / 3e-160 SDG31, SUVR4 SET DOMAIN PROTEIN 31, SET-domain containing protein lysine methyltransferase family protein (.1.2) AT5G43990 427 / 1e-140 SDG18, SUVR2 SET DOMAIN PROTEIN 18, SET-domain containing protein lysine methyltransferase family protein (.1.2.3.4.5) AT1G04050 402 / 1e-130 SDG13, SUVR1 SET DOMAIN PROTEIN 13, homolog of SU(var)3-9 1 (.1) AT2G23740 127 / 4e-30 C2H2ZnF AtCZS nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding (.1.2) AT5G04940 124 / 1e-29 SUVH1 SU(VAR)3-9 homolog 1 (.1), SU(VAR)3-9 homolog 1 (.2) AT1G73100 114 / 3e-26 SDG19, SUVH3 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) AT2G22740 114 / 5e-26 SDG23, SUVH6 SET DOMAIN PROTEIN 23, SU(VAR)3-9 homolog 6 (.1), SU(VAR)3-9 homolog 6 (.2) AT3G03750 108 / 3e-25 SUVR3, SDG20 SET domain protein 20 (.1.2) AT2G35160 103 / 9e-23 SGD9, SUVH5 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) AT5G13960 100 / 9e-22 SDG33, KYP, SUVH4 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G138600 [exp] 438 / 1e-146 AT3G04380 427 / 2e-144 SET DOMAIN PROTEIN 31, SET-domain containing protein lysine methyltransferase family protein (.1.2) Potri.002G257400 [exp] 434 / 7e-142 AT5G43990 524 / 8e-176 SET DOMAIN PROTEIN 18, SET-domain containing protein lysine methyltransferase family protein (.1.2.3.4.5) Potri.014G192500 [exp] 427 / 5e-139 AT5G43990 531 / 3e-178 SET DOMAIN PROTEIN 18, SET-domain containing protein lysine methyltransferase family protein (.1.2.3.4.5) Potri.007G033000 [exp] 116 / 1e-26 AT2G23740 1436 / 0.0 nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding (.1.2) Potri.005G129800 [exp] 116 / 2e-26 AT2G23740 1468 / 0.0 nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding (.1.2) Potri.001G036800 [exp] 113 / 5e-26 AT1G73100 796 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) Potri.003G188700 [exp] 112 / 1e-25 AT1G73100 806 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) Potri.013G064600 [exp] 104 / 4e-24 AT3G03750 258 / 1e-83 SET domain protein 20 (.1.2) Potri.003G083100 [exp] 107 / 7e-24 AT2G35160 676 / 0.0 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024946 [exp] 459 / 3e-152 AT5G43990 488 / 7e-163 SET DOMAIN PROTEIN 18, SET-domain containing protein lysine methyltransferase family protein (.1.2.3.4.5) Lus10005476 [exp] 442 / 1e-149 AT3G04380 503 / 3e-176 SET DOMAIN PROTEIN 31, SET-domain containing protein lysine methyltransferase family protein (.1.2) Lus10022879 [exp] 433 / 6e-142 AT5G43990 455 / 2e-149 SET DOMAIN PROTEIN 18, SET-domain containing protein lysine methyltransferase family protein (.1.2.3.4.5) Lus10012513 [exp] 389 / 2e-129 AT3G04380 419 / 2e-143 SET DOMAIN PROTEIN 31, SET-domain containing protein lysine methyltransferase family protein (.1.2) Lus10022657 [exp] 374 / 9e-125 AT3G04380 412 / 2e-142 SET DOMAIN PROTEIN 31, SET-domain containing protein lysine methyltransferase family protein (.1.2) Lus10027956 [exp] 235 / 4e-74 AT3G04380 226 / 3e-73 SET DOMAIN PROTEIN 31, SET-domain containing protein lysine methyltransferase family protein (.1.2) Lus10008198 [exp] 186 / 5e-55 AT3G04380 217 / 8e-69 SET DOMAIN PROTEIN 31, SET-domain containing protein lysine methyltransferase family protein (.1.2) Lus10022483 [exp] 113 / 2e-25 AT2G23740 1070 / 0.0 nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding (.1.2) Lus10013623 [exp] 106 / 8e-25 AT3G03750 320 / 3e-108 SET domain protein 20 (.1.2) Lus10029470 [exp] 107 / 4e-24 AT1G73100 762 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00856 [poplar] [flax] SET SET domain PF05033 [poplar] [flax] Pre-SET Pre-SET motif
Representative CDS sequence Show only first row Show all	>Potri.013G048100.7 pacid=42810699 polypeptide=Potri.013G048100.7.p locus=Potri.013G048100 ID=Potri.013G048100.7.v4.1 annot-version=v4.1 ATGGCCACCAGAGAGAGAGCTAGCTGTGCCTTCAAGGCAACAAGAGCTCTGGGAATTCGAGATGAAGAGGTGAAGCCAGTGCTGTTAAATCTCTTGAAGC TGTTTGATAAGAACTGGGAACTTATTGAAGCAGAAGATTATCGGGCACTCATAGATGCGTATTTTGAGTCGAAGGAAAGTGAGAGGGTATCAGACGAGAA AAGTCTCATGGAACATTCTGTGTATGAAAGACCCTCCAAGAGACCACATCTTGAACAACAGAAAGATCAGATTTCTTCTTCAACAGATAGCCTGAGCCCA GTTGAAAAAGTGATTTTCTCTTCGATGGCTCCTAAAGACTCAACTTGTAAGAGGGCATCATGCGCATTTTCTTCTGAACGACTGGCTGTTGAACCTCGCT GTTCTCATCCTCAGAAAGAAAAAATGTCTAGTAATTGTCACACCAGAGAGCTTATTAAGCCGAGAACTAAGCAAAGTGTCAGTGATGAGGCAGATTTTGC AGAACCCCCAGCAGCGGTCCATCCAGTTTTTCGAGGTTCTTTTGTTGGTTCAACAAATGGGAATAATTTGGTAACTCTCCTGGGATCTCAATGTGATGCT TCAAGTTCCAAGGATAGGATGTACTGTAATAGCAATGTTCTTATTGCTTCATCGACCTCTGGAGAAGTAAAAATTTCACTGAACTGTGATTCTGCAGTTA GATGTCAAAACTTCAAAGTTCCAGATTTCAATTCAGTTCTCAAGTATTTGGAGGATAAATATCTCAAGACACACAAACTTGTCACACCTGAATTTTCTAT GAAGACTTTATTCAAAGATTTGTGTGAATGTTATGTGCAAGTGGGTCAACTTCATGATCCACTGCCAAACAACAAAGCTTTGAGAATTGACAATTCCGAT ATGGTCGTGGACAAGAAGGCTTCAAGTTCTTTCAGATTGCCACATTCTTCTAAGAATTTACCAAAGGCTAAGCACAAAGCAACTGCTTGTGATAAGAAGA GGTCTGTTCGTAGTCTCAATGATATAACAAAGGGTGCAGAAAATGTCAAAATTTCATTGGTAGATGAATCTGGCAATGAGGATTTCCCAAAGTTCACTTA TATACCACATAATATAATATATCAAAATGCTTACTTGCTAATCTCACTGGCTCGGATAGCGGATGTAGATTGCTGTTCAAGTTGTTCAGGTGATTGCCTT TCTTCTCAGATACCCTGTGCATGTGCTCGTGAAACTGGTGGAGAATTTGCTTACACTCCAAAAGGCCTTTTGAAAGATGATTTTCTAACTGCATGTGTGT GCATGAGACGGACCCCTAAAAAAGACCATTTTGTTTATTGTCAAGACTGTCCATTAGAGAGATCAAAGAATGAACCATGCAAGGGTCACCTGCTCAGAAA GTTTATTAAAGAATGCTGGAGAAAATGTGGATGTCACATGACTTGTGGAAATCGAGTGGTTCAACGTGGTATTACATGCGACTTGCAGGTGTTCATGACT CCTCAAGGTAAAGGCTGGGGTCTTAGGACACTTCAGGATTTGCCTAAAGGATCCTTCATCTGTGAATATGTTGGGGAAATACTGACCAACACAGAGTTGT ATGAACGAAATATTCAGAACAGAGGCAATAACAGGCATACTTATCCTGTTACACTTGATGCAGACTGGGGCTCAGAGAAAGTACTGAGGGATGAAGAAGC ATTGTGTCTTGATGCAACTTTCAGTGGCAATGTTGCAAGATTTATTAATCATAGATGTCATGATGGAAATTTGATCGATATTCCAGTTGAAGTGGAGACC CCTGATCATCATTATTACCATCTTGCCTTTTTCACTACAAGGGATGTAACTGCCTCAGAAGAACTGACGTGGGATTATGGAATCGACTTTGATGATTATG ACCATCCAATAAAGGCATTTCGATGTTCTTGTGGAAGTGCATATTGCAGAGGCATGAATAGTATAGGTTAG
AA sequence Show only first row Show all	>Potri.013G048100.7 pacid=42810699 polypeptide=Potri.013G048100.7.p locus=Potri.013G048100 ID=Potri.013G048100.7.v4.1 annot-version=v4.1 MATRERASCAFKATRALGIRDEEVKPVLLNLLKLFDKNWELIEAEDYRALIDAYFESKESERVSDEKSLMEHSVYERPSKRPHLEQQKDQISSSTDSLSP VEKVIFSSMAPKDSTCKRASCAFSSERLAVEPRCSHPQKEKMSSNCHTRELIKPRTKQSVSDEADFAEPPAAVHPVFRGSFVGSTNGNNLVTLLGSQCDA SSSKDRMYCNSNVLIASSTSGEVKISLNCDSAVRCQNFKVPDFNSVLKYLEDKYLKTHKLVTPEFSMKTLFKDLCECYVQVGQLHDPLPNNKALRIDNSD MVVDKKASSSFRLPHSSKNLPKAKHKATACDKKRSVRSLNDITKGAENVKISLVDESGNEDFPKFTYIPHNIIYQNAYLLISLARIADVDCCSSCSGDCL SSQIPCACARETGGEFAYTPKGLLKDDFLTACVCMRRTPKKDHFVYCQDCPLERSKNEPCKGHLLRKFIKECWRKCGCHMTCGNRVVQRGITCDLQVFMT PQGKGWGLRTLQDLPKGSFICEYVGEILTNTELYERNIQNRGNNRHTYPVTLDADWGSEKVLRDEEALCLDATFSGNVARFINHRCHDGNLIDIPVEVET PDHHYYHLAFFTTRDVTASEELTWDYGIDFDDYDHPIKAFRCSCGSAYCRGMNSIG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G04380		SDG31, SUVR4	SET DOMAIN PROTEIN 31, SET-dom...		Potri.013G048100 [exp]	0	1
AT3G23900			RNA recognition motif (RRM)-co...		Potri.001G319000 [exp]	2.23	0.8583
AT5G15270			RNA-binding KH domain-containi...		Potri.004G100201 [exp]	3.00	0.8479
AT5G44800		PKR1, CHR4, MI-...	PICKLE RELATED 1, chromatin re...		Potri.010G172100 [exp]	3.74	0.8492
AT4G20740		EMB3131	EMBRYO DEFECTIVE 3131, Pentatr...		Potri.003G203100 [exp]	8.71	0.8148
AT1G77310			unknown protein		Potri.005G067800 [exp]	10.39	0.7790
					Potri.008G119000 [exp]	10.58	0.7954
AT1G19340			Methyltransferase MT-A70 famil...		Potri.014G041400 [exp]	12.00	0.6903
AT3G17310		DRM3, AtDRM3	domains rearranged methyltrans...		Potri.010G152200 [exp]	13.78	0.8068
AT5G55100			SWAP (Suppressor-of-White-APri...		Potri.001G356800 [exp]	13.85	0.7930
AT3G22430			unknown protein		Potri.010G235700 [exp]	14.49	0.7634

Compare expression of checked genes

Potri.013G048100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.