Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04350 755 / 0 Plant protein of unknown function (DUF946) (.1) AT5G18490 727 / 0 Plant protein of unknown function (DUF946) (.1) AT5G43950 633 / 0 Plant protein of unknown function (DUF946) (.1) AT1G04090 626 / 0 Plant protein of unknown function (DUF946) (.1) AT2G44260 479 / 2e-164 Plant protein of unknown function (DUF946) (.1), Plant protein of unknown function (DUF946) (.2) AT2G44230 477 / 1e-163 Plant protein of unknown function (DUF946) (.1) AT3G01870 411 / 2e-137 Plant protein of unknown function (DUF946) (.1) AT3G01880 409 / 2e-136 Plant protein of unknown function (DUF946) (.1) AT4G17140 45 / 0.0001 pleckstrin homology (PH) domain-containing protein (.1), pleckstrin homology (PH) domain-containing protein (.2), pleckstrin homology (PH) domain-containing protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G193100 [exp] 687 / 0 AT5G43950 681 / 0.0 Plant protein of unknown function (DUF946) (.1) Potri.001G232500 [exp] 517 / 4e-179 AT2G44260 729 / 0.0 Plant protein of unknown function (DUF946) (.1), Plant protein of unknown function (DUF946) (.2) Potri.018G087400 [exp] 513 / 8e-178 AT2G44260 691 / 0.0 Plant protein of unknown function (DUF946) (.1), Plant protein of unknown function (DUF946) (.2) Potri.009G025102 [exp] 500 / 2e-172 AT2G44260 746 / 0.0 Plant protein of unknown function (DUF946) (.1), Plant protein of unknown function (DUF946) (.2) Potri.002G256802 [exp] 218 / 2e-67 AT3G04350 210 / 1e-64 Plant protein of unknown function (DUF946) (.1) Potri.001G148800 [exp] 47 / 6e-05 AT4G17140 3708 / 0.0 pleckstrin homology (PH) domain-containing protein (.1), pleckstrin homology (PH) domain-containing protein (.2), pleckstrin homology (PH) domain-containing protein (.3) Potri.008G100600 [exp] 44 / 0.0005 AT1G48090 3782 / 0.0 calcium-dependent lipid-binding family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000813 [exp] 773 / 0 AT3G04350 761 / 0.0 Plant protein of unknown function (DUF946) (.1) Lus10027952 [exp] 768 / 0 AT3G04350 754 / 0.0 Plant protein of unknown function (DUF946) (.1) Lus10022871 [exp] 655 / 0 AT5G43950 693 / 0.0 Plant protein of unknown function (DUF946) (.1) Lus10024955 [exp] 654 / 0 AT5G43950 696 / 0.0 Plant protein of unknown function (DUF946) (.1) Lus10017579 [exp] 442 / 6e-150 AT2G44260 553 / 0.0 Plant protein of unknown function (DUF946) (.1), Plant protein of unknown function (DUF946) (.2) Lus10017580 [exp] 438 / 3e-148 AT2G44260 587 / 0.0 Plant protein of unknown function (DUF946) (.1), Plant protein of unknown function (DUF946) (.2) Lus10033542 [exp] 440 / 4e-148 AT2G44260 585 / 0.0 Plant protein of unknown function (DUF946) (.1), Plant protein of unknown function (DUF946) (.2) Lus10017582 [exp] 435 / 1e-146 AT2G44260 582 / 0.0 Plant protein of unknown function (DUF946) (.1), Plant protein of unknown function (DUF946) (.2) Lus10003007 [exp] 50 / 9e-06 AT4G17140 3544 / 0.0 pleckstrin homology (PH) domain-containing protein (.1), pleckstrin homology (PH) domain-containing protein (.2), pleckstrin homology (PH) domain-containing protein (.3) Lus10011036 [exp] 49 / 2e-05 AT4G17140 3546 / 0.0 pleckstrin homology (PH) domain-containing protein (.1), pleckstrin homology (PH) domain-containing protein (.2), pleckstrin homology (PH) domain-containing protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06101 [poplar] [flax] Vps62 Vacuolar protein sorting-associated protein 62
Representative CDS sequence Show only first row Show all	>Potri.013G048300.3 pacid=42811728 polypeptide=Potri.013G048300.3.p locus=Potri.013G048300 ID=Potri.013G048300.3.v4.1 annot-version=v4.1 ATGTTTGGTGGGTACTGTGAGTGCTTTTGTTGGAGCAACCAAGATTTTTATGATGATGATTTCTACTTGCCAGACCCTCAACCTTTCTCTTTGCCTGCAC CTCTTCCTATATGGCCTCAAGGTCAAGGATTCGCTGCTGGAAGAATAAATTTAGGAGAAATAGAAGTCGCCAAGATTACCAAATTTGAGAGTGTTTGGAG CTGTGGTCTACTACGTGGAAAATCAAAAGGGGTATCATTTTATCGGCCTGTTGGGATCCCTGAAGGTTTTCACTGCCTTGGTTACTATTGTCAGTCCAAT GACCAGCCTCTGAGAGGATACGTTCTTGTAGGTTGTGACTCCAATGCCCACAAGCCTGAAGTTGGCCATATCCATGACTCAGAGGTAGACTCTCCTCTTA GAAAGCCGCTTAACTACTCCTTGATTTGGGGTTCGAATTCAGAGAAGAATGGTGGTGGTGGTTACTTTTGGCTGCCAAATCCCCCAGAAGGTTACAAGGC TATGGGCATTGTGGTCACTAAAAATCCAGAGGAGCCTAAAGTTGAAGAAGTTAGATGTGTTCGAGCTGATCTTACTGAAAGATGTGAAACCAGCGATCAA ATAATTTCCTCGGATTCAAAATCTTCCAATCCGTTTGAGGTCTGGAACACAAGACCCCACAGAAGGGGAATGTTTGCTAAAGGTGTTTCTGTTGGGACAT TCTACTGCAATGCTTACTTGAGTTCTGATGAGGTACTAATAGATATTGCATGCTTGAAGAATCTTGACCACTCTCAGCCTGCAATGCCAAATCTGGACCA GGTTCATGCACTAATTAAGCATTATGGCCCTACTGTGTTTTTCCATCCGGACGAAGATTGCTTGCCCTCGTCAGTGCAATGGTTCTTCAAAAATGGAGCT CTTCTGTACCAAGATTGCGGGCAGAAGTGTGAACCTATTGATCTTAGGGGCTCAAACTTGCCCAGTGGAGGGGAAAATGATGGTGAATTTTGGATAGATT TGCCAGTTGATGATGCTGCCAGAAATGATGTCATAGCCGGAGATTTAGAGAGTGCTGAGCTTTATGTTCATGCAAAGCCAGCATTTGGGGGGACTTTTAC TGACATTGCTATGTGGATATTTTGTCCTTTCAATGGACCAGCCACCCTTAAAATTGGTCTTATGACTATACCAATGACCAAGATAGGACAACATGTGGGT GACTGGGAGCACTACACCCTTCGTGTAAGCAACTTCACTGGAGAACTATGGCAAGTCTTCTTCTCAGAACACAGTGGGGGTCGATGGGTGGATGCTTCAG ATTTGGAATTCATTGAAGGTAACAGGCCAGTTGTTTACTCCTCAAAACATGGTCATGCTAGTTTCCCACACCCTGGGACTTACCTTCAAGGATCAACAAA GCTTGGAATTGGAGTGAGAAATGATGTTGCTCGGAGCAAATATTATGTGGATTCGAGCTTAAAGTATCAACTTGTTGCAGCTGAATATCTTGGCGATGGA GTTGTTACAGAACCATGCTGGTTGCAGTATATGAGAGAATGGGGCCCAACCATTGTGTATGATTCGCGATCTGAAATAGATAAGATACTTGATCATCTCC CATTTTTTGTTCGATTTTCAGTGGAGAACCTCGTTGACTTGTTTCCAACAGAGCTTTATGGCGAGGAGGGGCCATCTGGACCGAAGGAAAAATATAACTG GGTGGGAGATGAAATATGCTAG
AA sequence Show only first row Show all	>Potri.013G048300.3 pacid=42811728 polypeptide=Potri.013G048300.3.p locus=Potri.013G048300 ID=Potri.013G048300.3.v4.1 annot-version=v4.1 MFGGYCECFCWSNQDFYDDDFYLPDPQPFSLPAPLPIWPQGQGFAAGRINLGEIEVAKITKFESVWSCGLLRGKSKGVSFYRPVGIPEGFHCLGYYCQSN DQPLRGYVLVGCDSNAHKPEVGHIHDSEVDSPLRKPLNYSLIWGSNSEKNGGGGYFWLPNPPEGYKAMGIVVTKNPEEPKVEEVRCVRADLTERCETSDQ IISSDSKSSNPFEVWNTRPHRRGMFAKGVSVGTFYCNAYLSSDEVLIDIACLKNLDHSQPAMPNLDQVHALIKHYGPTVFFHPDEDCLPSSVQWFFKNGA LLYQDCGQKCEPIDLRGSNLPSGGENDGEFWIDLPVDDAARNDVIAGDLESAELYVHAKPAFGGTFTDIAMWIFCPFNGPATLKIGLMTIPMTKIGQHVG DWEHYTLRVSNFTGELWQVFFSEHSGGRWVDASDLEFIEGNRPVVYSSKHGHASFPHPGTYLQGSTKLGIGVRNDVARSKYYVDSSLKYQLVAAEYLGDG VVTEPCWLQYMREWGPTIVYDSRSEIDKILDHLPFFVRFSVENLVDLFPTELYGEEGPSGPKEKYNWVGDEIC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G04350			Plant protein of unknown funct...		Potri.013G048300 [exp]	0	1
AT2G17030			F-box family protein with a do...		Potri.002G014500 [exp]	3.74	0.8101
AT1G03610			Protein of unknown function (D...		Potri.017G152601 [exp]	5.83	0.8202
AT1G08315			ARM repeat superfamily protein...		Potri.003G195400 [exp]	6.32	0.7577
AT3G13060		ECT5	evolutionarily conserved C-ter...		Potri.014G001000 [exp]	7.34	0.7483
AT1G66950		ABCG39, PDR11, ...	ATP-binding cassette G39, plei...		Potri.010G235801 [exp]	19.07	0.7656
					Potri.017G152701 [exp]	24.97	0.7510
AT1G50030		TOR	target of rapamycin (.1.2)		Potri.001G289200 [exp]	26.45	0.7338	Pt-TOR.1
AT5G61930		APO3	ACCUMULATION OF PHOTOSYSTEM ON...		Potri.015G106200 [exp]	27.49	0.7092
AT5G39785			Protein of unknown function (D...		Potri.017G082300 [exp]	27.92	0.7476
AT4G32090			Beta-1,3-N-Acetylglucosaminylt...		Potri.009G129400 [exp]	39.05	0.6974

Compare expression of checked genes

Potri.013G048300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.