Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G02540 82 / 6e-19 ZF_HD ATHB21, ZFHD4, ZHD3 ZINC FINGER HOMEODOMAIN 3, ZINC FINGER HOMEODOMAIN 4, homeobox protein 21 (.1) AT1G14440 80 / 3e-18 ZF_HD ATHB31, ZHD4 ZINC FINGER HOMEODOMAIN 4, homeobox protein 31 (.1.2) AT1G75240 79 / 4e-18 ZF_HD ATHB33, ZHD5 zinc-finger homeodomain 5, homeobox protein 33 (.1) AT2G18350 78 / 1e-17 ZF_HD ATHB24, ZHD6 ZINC FINGER HOMEODOMAIN 6, homeobox protein 24 (.1) AT5G65410 77 / 2e-17 ZF_HD ATHB25, ZFHD2, ZHD1 ZINC FINGER HOMEODOMAIN 1, ZINC FINGER HOMEODOMAIN 2, ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 25, homeobox protein 25 (.1) AT4G24660 76 / 2e-17 ZF_HD ATHB22, MEE68, ZHD2 ZINC FINGER HOMEODOMAIN 2, MATERNAL EFFECT EMBRYO ARREST 68, homeobox protein 22 (.1) AT1G74660 71 / 2e-16 ZF_HD MIF1 mini zinc finger 1 (.1) AT3G28917 68 / 2e-15 ZF_HD MIF2 mini zinc finger 2 (.1) AT3G50890 69 / 1e-14 ZF_HD ATHB28, ZHD7 ZINC FINGER HOMEODOMAIN 7, homeobox protein 28 (.1) AT5G60480 67 / 4e-14 ZF_HD ATHB26, ZHD12 ZINC FINGER HOMEODOMAIN 12, homeobox protein 26 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G021400 [exp] 162 / 6e-52 AT2G02540 90 / 2e-22 ZINC FINGER HOMEODOMAIN 3, ZINC FINGER HOMEODOMAIN 4, homeobox protein 21 (.1) Potri.019G081300 [exp] 89 / 6e-22 AT4G24660 166 / 8e-51 ZINC FINGER HOMEODOMAIN 2, MATERNAL EFFECT EMBRYO ARREST 68, homeobox protein 22 (.1) Potri.007G024100 [exp] 88 / 4e-21 AT1G75240 186 / 2e-56 zinc-finger homeodomain 5, homeobox protein 33 (.1) Potri.004G229600 [exp] 82 / 4e-19 AT1G14440 244 / 1e-79 ZINC FINGER HOMEODOMAIN 4, homeobox protein 31 (.1.2) Potri.013G108900 [exp] 82 / 5e-19 AT4G24660 171 / 2e-52 ZINC FINGER HOMEODOMAIN 2, MATERNAL EFFECT EMBRYO ARREST 68, homeobox protein 22 (.1) Potri.003G000400 [exp] 81 / 9e-19 AT1G14440 238 / 9e-78 ZINC FINGER HOMEODOMAIN 4, homeobox protein 31 (.1.2) Potri.004G135100 [exp] 80 / 2e-18 AT2G02540 213 / 4e-68 ZINC FINGER HOMEODOMAIN 3, ZINC FINGER HOMEODOMAIN 4, homeobox protein 21 (.1) Potri.005G227900 [exp] 80 / 2e-18 AT2G18350 171 / 4e-52 ZINC FINGER HOMEODOMAIN 6, homeobox protein 24 (.1) Potri.010G169400 [exp] 79 / 6e-18 AT1G69600 152 / 2e-44 ZINC FINGER HOMEODOMAIN 11, ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 29, zinc finger homeodomain 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010694 [exp] 88 / 3e-21 AT2G02540 215 / 5e-68 ZINC FINGER HOMEODOMAIN 3, ZINC FINGER HOMEODOMAIN 4, homeobox protein 21 (.1) Lus10038135 [exp] 86 / 4e-20 AT2G02540 223 / 7e-71 ZINC FINGER HOMEODOMAIN 3, ZINC FINGER HOMEODOMAIN 4, homeobox protein 21 (.1) Lus10007147 [exp] 82 / 1e-18 AT2G18350 222 / 1e-70 ZINC FINGER HOMEODOMAIN 6, homeobox protein 24 (.1) Lus10033016 [exp] 69 / 1e-15 AT3G28917 103 / 4e-30 mini zinc finger 2 (.1) Lus10015370 [exp] 69 / 1e-15 AT3G28917 100 / 5e-29 mini zinc finger 2 (.1) Lus10014302 [exp] 70 / 1e-14 AT1G75240 176 / 9e-54 zinc-finger homeodomain 5, homeobox protein 33 (.1) Lus10036753 [exp] 69 / 2e-14 AT5G15210 112 / 3e-30 ZINC FINGER HOMEODOMAIN 8, ZINC FINGER HOMEODOMAIN 3, homeobox protein 30 (.1) Lus10005242 [exp] 64 / 2e-12 AT5G39760 218 / 9e-69 ZINC FINGER HOMEODOMAIN 10, homeobox protein 23 (.1) Lus10026010 [exp] 63 / 5e-12 AT1G75240 172 / 2e-52 zinc-finger homeodomain 5, homeobox protein 33 (.1) Lus10031315 [exp] 58 / 1e-10 AT1G75240 137 / 9e-40 zinc-finger homeodomain 5, homeobox protein 33 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04770 [poplar] [flax] ZF-HD_dimer ZF-HD protein dimerisation region
Representative CDS sequence Show only first row Show all	>Potri.013G048466.1 pacid=42812153 polypeptide=Potri.013G048466.1.p locus=Potri.013G048466 ID=Potri.013G048466.1.v4.1 annot-version=v4.1 ATGGCTAATGCTGATTCAAAATCCAGGCCACCCAATGAAGAATCAAGAACAATCACCGAGTATAGAGAGTGTTGGCGTAACCATGCCATGTTGACTGGTG GCTCTGCTGTTGATGGTTGTGGAGAGTTCACTCCGAAAGGTGATCAAGGTACTAAAGAAGCTTTCATCTGTGAAGCTTGTGGTTGTCATAGAAATTTTCA TAGAAAACAGTTGATCAAGAATGGTATAATCATTCTTGATACTCACCTTTCACCTCCTCCATGTAGACTATATGGTGCTTCTATGTGGGTAGAAAAGAAT GCTTCAGGGTTTCATCCATTGTCTTCCCTTCCACTCACTTCACCTCCTCCTTCCTGTTATCTACGTACCTCAGTCAGTGATCAAGAGTCTCTGGTCTACG TACCGCCTCCTCCTCCTCCTCCACGCAAGCCTGAGAAGAAAACGAAGGCAAGAAAAGGGCCTAAAAGAGGCACCTTAATGCACAACAAGAAATGA
AA sequence Show only first row Show all	>Potri.013G048466.1 pacid=42812153 polypeptide=Potri.013G048466.1.p locus=Potri.013G048466 ID=Potri.013G048466.1.v4.1 annot-version=v4.1 MANADSKSRPPNEESRTITEYRECWRNHAMLTGGSAVDGCGEFTPKGDQGTKEAFICEACGCHRNFHRKQLIKNGIIILDTHLSPPPCRLYGASMWVEKN ASGFHPLSSLPLTSPPPSCYLRTSVSDQESLVYVPPPPPPPRKPEKKTKARKGPKRGTLMHNKK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G02540	ZF_HD	ATHB21, ZFHD4, ...	ZINC FINGER HOMEODOMAIN 3, ZIN...		Potri.013G048466 [exp]	0	1
AT5G14280	GeBP		DNA-binding storekeeper protei...		Potri.010G056000 [exp]	8.60	0.7158
AT5G50011		CPuORF37	conserved peptide upstream ope...		Potri.005G158000 [exp]	11.13	0.7020
AT1G58122		CPuORF45	conserved peptide upstream ope...		Potri.007G113150 [exp]	11.66	0.7154
AT2G27228		CPuORF6	conserved peptide upstream ope...		Potri.001G216800 [exp]	20.49	0.6892
AT2G33320			Calcium-dependent lipid-bindin...		Potri.013G048400 [exp]	23.43	0.6752
AT2G16880			Pentatricopeptide repeat (PPR)...		Potri.008G044050 [exp]	24.81	0.6797
AT2G31280	bHLH	bHLH155 ,CPuORF...	conserved peptide upstream ope...		Potri.005G222550 [exp]	26.32	0.6552
AT2G31280	bHLH	bHLH155 ,CPuORF...	conserved peptide upstream ope...		Potri.006G090033 [exp]	27.11	0.6817
AT5G52552		CPuORF14	conserved peptide upstream ope...		Potri.017G143300 [exp]	31.52	0.6380
					Potri.010G080633 [exp]	37.46	0.6467

Compare expression of checked genes

Potri.013G048466 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.