Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	CHR923
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08600 1603 / 0 ATRX, CHR20 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4) AT3G19210 282 / 3e-79 ATRAD54, CHR25 homolog of RAD54 (.1.2) AT2G18760 207 / 5e-54 CHR8 chromatin remodeling 8 (.1) AT5G63950 203 / 1e-52 CHR24 chromatin remodeling 24 (.1) AT5G19310 197 / 4e-51 Homeotic gene regulator (.1) AT2G13370 191 / 1e-48 CHR5 chromatin remodeling 5 (.1) AT3G06400 189 / 2e-48 CHR11 chromatin-remodeling protein 11 (.1.2.3) AT5G18620 188 / 3e-48 CHR17 chromatin remodeling factor17 (.1.2) AT2G21450 185 / 7e-48 CHR34 chromatin remodeling 34 (.1) AT1G05490 177 / 2e-44 CHR31 chromatin remodeling 31 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G021500 [exp] 2495 / 0 AT1G08600 1612 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4) Potri.004G141500 [exp] 273 / 6e-76 AT3G19210 1259 / 0.0 homolog of RAD54 (.1.2) Potri.005G226500 [exp] 217 / 4e-57 AT2G18760 1362 / 0.0 chromatin remodeling 8 (.1) Potri.005G066600 [exp] 207 / 4e-54 AT2G18760 353 / 7e-104 chromatin remodeling 8 (.1) Potri.007G102800 [exp] 199 / 1e-51 AT5G63950 1103 / 0.0 chromatin remodeling 24 (.1) Potri.009G047800 [exp] 194 / 1e-49 AT2G13370 2129 / 0.0 chromatin remodeling 5 (.1) Potri.001G253400 [exp] 192 / 6e-49 AT2G13370 2206 / 0.0 chromatin remodeling 5 (.1) Potri.010G021400 [exp] 190 / 8e-49 AT3G06400 1748 / 0.0 chromatin-remodeling protein 11 (.1.2.3) Potri.013G068400 [exp] 183 / 4e-46 AT3G54280 2717 / 0.0 ROOT GROWTH DEFECTIVE 3, DNA binding;ATP binding;nucleic acid binding;binding;helicases;ATP binding;DNA binding;helicases (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003572 [exp] 1792 / 0 AT1G08600 1560 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4) Lus10032785 [exp] 1792 / 0 AT1G08600 1252 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4) Lus10014047 [exp] 275 / 2e-76 AT3G19210 1256 / 0.0 homolog of RAD54 (.1.2) Lus10019866 [exp] 274 / 4e-76 AT3G19210 1257 / 0.0 homolog of RAD54 (.1.2) Lus10003543 [exp] 231 / 2e-61 AT2G18760 1543 / 0.0 chromatin remodeling 8 (.1) Lus10033909 [exp] 231 / 3e-61 AT2G18760 1569 / 0.0 chromatin remodeling 8 (.1) Lus10015690 [exp] 213 / 9e-56 AT5G63950 1133 / 0.0 chromatin remodeling 24 (.1) Lus10037696 [exp] 210 / 5e-55 AT5G63950 1121 / 0.0 chromatin remodeling 24 (.1) Lus10022423 [exp] 181 / 1e-45 AT2G13370 2250 / 0.0 chromatin remodeling 5 (.1) Lus10009711 [exp] 181 / 2e-45 AT2G13370 2115 / 0.0 chromatin remodeling 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00271 [poplar] [flax] Helicase_C Helicase conserved C-terminal domain CL0023 [poplar] [flax] P-loop_NTPase PF04851 [poplar] [flax] ResIII Type III restriction enzyme, res subunit
Representative CDS sequence Show only first row Show all	>Potri.013G048500.2 pacid=42811504 polypeptide=Potri.013G048583.1.p locus=Potri.013G048500 ID=Potri.013G048500.2.v4.1 annot-version=v4.1 ATGGAGGATAAACACGAGGAAGTTGAGGACATTGAGAGTGGTTTAAGTGATTCATTTATTGACGACGACGACGAAGATTCTAATAATGATGATGATAACG AACCTTCTACATCTGGACAAGATGATGGGACCCGTATTCAGGAACCTTTGACCGACCAAGAAGTAGAGGAGTTGGTTGCTGAGTTCCTGGAAGTTGAGAG TAAGGCTGCAGAGGCTCAAGAAGCACTGGAAAAGGAGTCTCTTGCAAAAGTAGAGAGTGATGTGAGAGAGGAGTTGGCACGAAGTCTCCAGGGTGATGAT CTGGAGGCAGCTGTTGAAGATGAGATGGCTACTTTCAGGGAAGAGTGGGAAAATGTGCTCGATGAGCTCGAGACTGAGAGTTATCATTTGTTGGAACAAC TTGATGGGACTGGTATTGAGCTGCCAAACCTTTATAAGTGGATTGAGAGCCAGGCTCCAAACAGTTGCTGCACTGAAGCTTGGAAAAGAAGGGCACACTG GGTGGGAACTCAGATGACCAAGGAAACGACTGATACAGTAGCTGATGCTGAGAAATATCTTCAAATCCATAGGCCTGTTAGACGAAAACATGGTAAATTA TTGGAGGAGGGTGCAAGTGGATTCCTGCAGAAAAAACTTGCAATGGATGGAAGCGAGGCTATTGCAGAAAATAGAGAAGTAGATTGGGCCTCTATGAAGA AACTATTCTCAACTAGCAGTTCTGAGGATGTTGCTTCATTTGGCAGCAAGCATTGGGCTTCTGTTTACCTTGCCAACACTCCCCAGGAAGCTGCACTTAT GGGACTTAAATTTCCTGGAGTCAATGAGGTTGAGGAGATTGAAGACATTGATGGGAATTCCACTGATCCATTTGTTGCAGAGGCCATAGCAAATGAAAAG GAATTAGTTCTTTCAGAGGAACAGAGAAAAAATTACAGAAAGGTCAAAGAGGAAGATGATGCAAAAATTGATCAGAAACTTCAACTTCGTTTGAAACAAA GGAGACGTCTTAAGAGATGTAAACAGGGTGTCAGCTCAGTCGTCCAGGAAATGGGAACAAACATGGCTGAGTCATTGCCTCTGGATGACAATCATCATGA GGTCACATGCCAAGATTTGAAGAAAGACGTGTGTGAAAATTCTGGAGACCTTGATATGGAACAGTTGATGAGTGAGAGCAATTCAGTTTTCCCAGAATCT GATGCCTCTGAACCCAGAAGGTCCAAGCGTCCAAATGAGAGTGAGGACCTAAGCATCAATAATAAGAAGATTCGGACTGTTATCATAGACAGTGACAATG AAGCAGACATTTTGGAGGATAAATCAGTACACGGCATTAAAGTTGAAGACCAATCAACTTTGCTAGAAAACATTGGGGACCCTTCTGCTGGCTGCAATCC TTCACAGGGTTCAAGTGAGAAGTTTCAGTGCACTGCCTGTGATAAAGTTGCTGTTGAAGTGCACTCACATCCACTTTTGAAAGTAATTGTTTGCAAAGAT TGTAAATTCTTAATGGAGGAAAAAATGCATGTGAAGGATCCTGACTGTTCTGAGTGTTACTGTGGATGGTGTGGAAAAAACAATGACTTGGTAAGTTGTA GGTCATGCAGAACATTATTCTGCACTGCTTGTATAAAAAGGAACATCGGTGAAGAGTACTTGTATAAGGTTCCAGTTTCTGGTTGGCAATGTTGTTGCTG CTCTCCAAGTCTGCTACAAAGACTTACATCACAGTTAGAGAAAGCCATGGGGTCTGGAGATATAATGGTTTCAAGTTCTGATAGTGATTCAGACTCTTCA GATACAAATGACGGTGTTACAATCAGCTCTAAGAGAAAGAAGCAAAAGAAGATTAGAAGAATCATTGATGATGCTGAATTAGGAGAAGAGACCAAGAGAA AAATTGCTATTGAAAAGGAACGTCAAGAACGCTTGAAATCCCTGAAAGTCAAGTTTTCTGACAAATCCAAGATGATGAATTTTGCAAGCTGTAGCGGAAA CTTACCCGAAGGTGCTAGTGTTGAAGTGATTGGTGATGCCACAACTGGTTATATTGTGAATGTTGCGAGGGAAAAAGGTGAAGAAGCTGTGAGGATTCCT CCAAGCTTATCATCTAAATTGAAAGCTCATCAGGTGGCAGGGATAAGATTTCTATGGGAAAATATTATACAGTCAATTAGAAAAGTGAAGTCTGGGGATA ATGGTCTTGGTTGTATTTTAGCGCATACAATGGGCCTTGGTAAAACTTTTCAGGTCATAGCTTTTCTGTACACTGCCATGAGAGGTGTTGATCTGGGTTT AAGAACAGCACTAATTGTGACTCCTGTGAATGTGCTGCATAACTGGCGCAAGGAGTTCATGAAGTGGACACCTTCAGAAGTAAAGCCGATCCGTGTTTTC ATGCTGGAGGATGTGTCGAGGGAGAGAAGAGTGGAATTGCTTGCAAAGTGGAGAGCTAAAGGTGGTGTTTTCTTGATAGGCTACTCTGCCTTTAGGAACT TATCTCTCGGAAAGAATGTGAAGGAACGAAATATGGCTAGAGAAATGTGTAGTGCCTTGCAGGATGGACCTGATATACTTGTTTGTGATGAAGCCCACAT CATCAAGAACACCAGAGCTGAAACAACCCAGGCACTGAAACTCGTTAAGTGCCAGAGAAGGATAGCATTAACTGGATCACCTCTTCAGAACAATCTAATG GAGTATTATTGTATGGTTGATTTTGTAAGAGAAGGTTTTCTTGGCAGCAGCCACGAGTTTCGGAACCGCTTCCAAAATCCTATAGAAAATGGACAACATA CTAATTCAACGGTTGATGATGTAAAGATAATGAACCAAAGATCTCATATTCTCTATGAACAATTGAAAGGGTTTGTTCAAAGAATGGACATGAGTGTGGT GAAGAAAGACCTGCCACCTAAAACTGTATTTGTAGTGGCTGTAAAGCTCTCGCCATTACAGAGGAAATTGTACAAGAGATTCCTTGATGTGCATGGGTTC ACAAATGGTAGGGCTTCAAATGAAAAGACGAGTAAGAGCTTTTTTGCTGGTTACCAGGCACTGGCTCAGATATGGAACCATCCTGGAATTTTGCAATTGA GGAAAGGGAGAGAATATGTTGGCAATGTTGAAAACTTTCTTGCAGATGACTGCTCTAGTGATGAAAATGTGGACTACAATACAATTGTCGAAGAGAAGTC AAGGAATCCAAATGATTTTATTCAAGGGAAAAACGATGATGGATTCTTTCAAAAGGATTGGTGGAATGATCTTCTACTTGAAAATAATTATAAAGAGGTT GATTACAGCGGCAAAATGGTATTGCTGCTTGACATTTTAGTCATGTCTTCTGATGTGGGTGATAAGACGTTGGTTTTTACCCAGAGCATACCCACTTTAG ATCTGATAGAGCTTTATCTTTCAAGATTACCTCGACTTGGAAAAAAGGGAAAGTTTTGGAGAAAAGGAAAAGACTGGTATAGGCTAGATGGAAGAACAGA GAGCTCTGAAAGACAGAGGTTGGTTGAGAGGTTCAATGATCCCAAGAATAAACGGGTCAAGTGTACTTTGATTTCTACCAGGGCTGGTTCTCTTGGGATT AATCTCTATGCTGCTAACCGGGTGGTTATTGTTGATGGCTCTTGGAATCCAACGTATGATCTTCAGGCCATATATCGGGCTTGGAGGTATGGCCAGACTA AGCCAGTGTTTGCTTACAGATTAATGGCACATGGAACCATGGAAGAAAAAATCTATAAGCGTCAGGTAACAAAGGAGGGACTTGCTGCAAGGGTGGTTGA TAGACAACAAGTATATAGGACTATCTCCAGAGAAGAAATGTTGCATCTTTTTGAATTTGGTGATGATGAAAACTCAGACACACTAATTGACATTGGCCAA GAGTATAGACAGGCAGATACCAGGAATATTTCTAGCCAAACCGCAAATTCTTTGAAACAGAATGCGTCTCGTTCTCATGGAAGCTGTGCTTCTGATAAGG TGATGGAAAGCTTGGTTGGCAAGCACCGTCAGAGGTGGATTTTCGATTACCATGAACATGAGACTCTTTTGCAAGAGAATGAAGAGGAAAAACTAACAAA GGAGGAGCAAGACATGGCTTGGGAAGTATATAAGAGATCATTAGAATGGGAAGAAGTGCAGCGAGTTTCCCTTGATGATTCCACTTTTGAGCGAAAGCCA CCCATGTCAAATGGTGCATCTTCTGCCCCAGATGCAAGCAGCATACCTGTGCCAAGCATGGCCCGTCCTGCATCTGAGGCTTCCAATGGAGCACCTTCCC AGAGCATTTTAAGGAGTCGTATGGTGCAGCGGAAATGTACTAATCTCTCTCATTTGCTGACCCTTAGAAGTCAGGGAACGAAAGCTGGGTGCACTACTAT ATGTGGGGAATGTGCCCAGGAGATAAGCTGGGAAGATCTGAAACGGGAGGGTAAGGCAGCACGGTAA
AA sequence Show only first row Show all	>Potri.013G048500.2 pacid=42811504 polypeptide=Potri.013G048583.1.p locus=Potri.013G048500 ID=Potri.013G048500.2.v4.1 annot-version=v4.1 MEDKHEEVEDIESGLSDSFIDDDDEDSNNDDDNEPSTSGQDDGTRIQEPLTDQEVEELVAEFLEVESKAAEAQEALEKESLAKVESDVREELARSLQGDD LEAAVEDEMATFREEWENVLDELETESYHLLEQLDGTGIELPNLYKWIESQAPNSCCTEAWKRRAHWVGTQMTKETTDTVADAEKYLQIHRPVRRKHGKL LEEGASGFLQKKLAMDGSEAIAENREVDWASMKKLFSTSSSEDVASFGSKHWASVYLANTPQEAALMGLKFPGVNEVEEIEDIDGNSTDPFVAEAIANEK ELVLSEEQRKNYRKVKEEDDAKIDQKLQLRLKQRRRLKRCKQGVSSVVQEMGTNMAESLPLDDNHHEVTCQDLKKDVCENSGDLDMEQLMSESNSVFPES DASEPRRSKRPNESEDLSINNKKIRTVIIDSDNEADILEDKSVHGIKVEDQSTLLENIGDPSAGCNPSQGSSEKFQCTACDKVAVEVHSHPLLKVIVCKD CKFLMEEKMHVKDPDCSECYCGWCGKNNDLVSCRSCRTLFCTACIKRNIGEEYLYKVPVSGWQCCCCSPSLLQRLTSQLEKAMGSGDIMVSSSDSDSDSS DTNDGVTISSKRKKQKKIRRIIDDAELGEETKRKIAIEKERQERLKSLKVKFSDKSKMMNFASCSGNLPEGASVEVIGDATTGYIVNVAREKGEEAVRIP PSLSSKLKAHQVAGIRFLWENIIQSIRKVKSGDNGLGCILAHTMGLGKTFQVIAFLYTAMRGVDLGLRTALIVTPVNVLHNWRKEFMKWTPSEVKPIRVF MLEDVSRERRVELLAKWRAKGGVFLIGYSAFRNLSLGKNVKERNMAREMCSALQDGPDILVCDEAHIIKNTRAETTQALKLVKCQRRIALTGSPLQNNLM EYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTVDDVKIMNQRSHILYEQLKGFVQRMDMSVVKKDLPPKTVFVVAVKLSPLQRKLYKRFLDVHGF TNGRASNEKTSKSFFAGYQALAQIWNHPGILQLRKGREYVGNVENFLADDCSSDENVDYNTIVEEKSRNPNDFIQGKNDDGFFQKDWWNDLLLENNYKEV DYSGKMVLLLDILVMSSDVGDKTLVFTQSIPTLDLIELYLSRLPRLGKKGKFWRKGKDWYRLDGRTESSERQRLVERFNDPKNKRVKCTLISTRAGSLGI NLYAANRVVIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQVYRTISREEMLHLFEFGDDENSDTLIDIGQ EYRQADTRNISSQTANSLKQNASRSHGSCASDKVMESLVGKHRQRWIFDYHEHETLLQENEEEKLTKEEQDMAWEVYKRSLEWEEVQRVSLDDSTFERKP PMSNGASSAPDASSIPVPSMARPASEASNGAPSQSILRSRMVQRKCTNLSHLLTLRSQGTKAGCTTICGECAQEISWEDLKREGKAAR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G08600		ATRX, CHR20	P-loop containing nucleoside t...		Potri.013G048500 [exp]	0	1	CHR923
AT1G08600		ATRX, CHR20	P-loop containing nucleoside t...		Potri.019G021500 [exp]	1.00	0.8806
AT2G26790			Pentatricopeptide repeat (PPR)...		Potri.004G066600 [exp]	3.46	0.8094
AT4G00800		SETH5	transducin family protein / WD...		Potri.014G105601 [exp]	3.46	0.8220
AT3G12810		CHR13, SRCAP, P...	PHOTOPERIOD-INDEPENDENT EARLY ...		Potri.001G207700 [exp]	4.69	0.8431
AT3G23900			RNA recognition motif (RRM)-co...		Potri.017G058300 [exp]	5.47	0.8083
AT3G02260		CRM1, TIR3, LPR...	UMBRELLA 1, TRANSPORT INHIBITO...		Potri.017G101100 [exp]	8.48	0.7867
AT2G19390			unknown protein		Potri.018G056400 [exp]	9.53	0.7878
AT5G55060			unknown protein		Potri.011G089300 [exp]	10.09	0.7559
AT5G56890			Protein kinase superfamily pro...		Potri.018G068100 [exp]	11.40	0.7640
AT5G49530			SIN-like family protein (.1)		Potri.007G028600 [exp]	11.83	0.7636

Compare expression of checked genes

Potri.013G048500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.