Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08590 1306 / 0 Leucine-rich receptor-like protein kinase family protein (.1) AT4G28650 1246 / 0 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT5G61480 779 / 0 PXY, TDR TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) AT5G65700 675 / 0 BAM1 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) AT3G49670 675 / 0 BAM2 BARELY ANY MERISTEM 2, Leucine-rich receptor-like protein kinase family protein (.1) AT4G20270 670 / 0 BAM3 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1) AT1G75820 656 / 0 ATCLV1, FLO5, FAS3, CLV1 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) AT1G28440 634 / 0 HSL1 HAESA-like 1 (.1) AT3G24240 617 / 0 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT5G65710 602 / 0 HSL2 HAESA-like 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G021700 [exp] 1820 / 0 AT1G08590 1286 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.002G256500 [exp] 1389 / 0 AT4G28650 1339 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.003G107600 [exp] 818 / 0 AT5G61480 1259 / 0.0 TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) Potri.001G126100 [exp] 800 / 0 AT5G61480 1258 / 0.0 TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) Potri.007G009200 [exp] 694 / 0 AT5G65700 1530 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.001G073600 [exp] 674 / 0 AT4G20270 1279 / 0.0 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1) Potri.003G157300 [exp] 669 / 0 AT4G20270 1285 / 0.0 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1) Potri.005G241500 [exp] 654 / 0 AT1G75820 1268 / 0.0 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) Potri.004G223900 [exp] 649 / 0 AT5G65700 992 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000814 [exp] 1474 / 0 AT1G08590 1263 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10027951 [exp] 1442 / 0 AT1G08590 1256 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10025943 [exp] 1225 / 0 AT4G28650 1284 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10038930 [exp] 771 / 0 AT5G61480 1248 / 0.0 TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) Lus10027221 [exp] 769 / 0 AT5G61480 1263 / 0.0 TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) Lus10039641 [exp] 677 / 0 AT5G65700 1580 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10019248 [exp] 661 / 0 AT5G65700 1479 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10017267 [exp] 635 / 0 AT1G75820 1305 / 0.0 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10013562 [exp] 634 / 0 AT1G75820 1297 / 0.0 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10036242 [exp] 630 / 0 AT4G20270 1248 / 0.0 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.013G048800.1 pacid=42812023 polypeptide=Potri.013G048800.1.p locus=Potri.013G048800 ID=Potri.013G048800.1.v4.1 annot-version=v4.1 ATGCAAACCCTTTTACTGTTCTTCGACATTTGCATTGCTTTCTCTCTTGTTTTTGTTGAGGGAGTTCAAAGTGTACAGTATGATGAATTGTCAACTTTGT TGTTGATCAAATCTAGCCTGATTGATCCGTCAAATAAACTTATGGGTTGGAAAATGCCAGGCAATGCAGCTGGGAATCGGTCTCCCCATTGTAACTGGAC TGGAGTACGGTGCAGCACCAAGGGGTTTGTAGAGAGGCTTGACCTTTCCAACATGAATCTCAGTGGCATTGTATCATATCATATTCAGGAGTTGCGTAGT CTTTCTTTTCTCAACATCTCTTGTAATGGGTTTGATTCTTCGTTGCCAAAATCACTAGGAACTCTCACCTCATTGAAGACCATTGATGTAAGTCAGAACA ACTTCATTGGCAGCTTCCCCACTGGTCTAGGAATGGCCTCTGGATTGACTTCAGTCAATGCATCAAGCAACAACTTCTCAGGCTATCTTCCTGAAGATCT TGGCAATGCAACATCACTCGAAAGCTTAGATTTTCGAGGGAGCTTCTTCGTAGGCTCAATTCCTAGTTCTTTCAAGTATCTGCAGAAACTGAAGTTTCTC GGCCTTTCTGGTAATAATCTGACCGGAAGGATTCCAAGAGAGATAGGCCAACTTGCTTCTCTAGAGACCATCATTCTTGGATACAATGAGTTCGAAGGAG AAATCCCAGCAGAGATTGGAAACCTCACCAGTCTTCAGTATCTTGACTTGGCAGTCGGCAGACTCAGTGGCCAGATTCCTGCTGAATTGGGTAGGCTAAA GCAACTTGCAACAGTTTATCTGTACAAGAACAATTTCACAGGAAAGATTCCACCAGAACTTGGTAATGCTACATCCCTTGTATTCCTGGATCTTTCGGAT AATCAGATTTCAGGAGAGATCCCAGTGGAGGTAGCAGAACTGAAGAATCTGCAGCTCTTGAATTTGATGAGCAATCAACTGAAGGGTACAATTCCTACCA AGCTTGGTGAATTAACCAAATTGGAGGTGCTTGAGCTATGGAAGAATTTTCTGACTGGTCCTTTGCCTGAGAATCTAGGACAGAACTCACCCTTGCAATG GTTAGATGTGTCATCAAATTCATTGTCAGGTGAGATTCCACCAGGTTTGTGTCATTCTGGCAATCTCACTAAACTCATTCTCTTCAACAACTCCTTCTCT GGCCCAATCCCCACAAGTCTCTCAACCTGTAAGTCATTAGTACGTGTTCGCATGCAGAATAATCTTATTTCTGGGACAATTCCAGTTGGTCTTGGAAGTC TTCCATTACTTCAAAGGCTGGAATTGGCTAACAACAATCTAACTGGCCAAATACCAGACGACATTGCTTTGTCTACATCACTTTCTTTCATTGATGTCTC TGGAAACCACCTTGAATCATCTCTCCCATATGGCATTCTCTCCGTTCCTAACCTTCAGATATTCATGGCCTCCAACAACAACTTTGAAGGCCAAATCCCA GACCAATTCCAAGATTGCCCATCACTTTCACTTCTTGAACTTTCAAGCAACCATTTCTCTGGAAAAATCCCAGAGAGCATTGCTTCATGTGAAAAGCTGG TGAATCTGAACCTGCAAAACAATCAATTTACTGGGGAGATCCCAAAAGCAATCTCAACAATGCCCACATTGGCCATTCTTGACCTGTCCAACAATTCTCT TGTTGGTCGGATCCCAGCGAACTTTGGGACCTCACCAGCCTTGGAAATGGTAAACTTGTCATTCAATAAACTTGAGGGTCCGGTTCCCTCCAATGGAATG CTGACGACCATAAATCCTAATGATCTTATTGGCAATGCTGGTCTTTGTGGCGGCGTACTTCCACCCTGCTCTACTACTTCCTCTGCATCAAAGCAACAAG AGAATCTGCGCGTCAAGCATGTCATAACAGGATTCATCATCGGAGTCTCAATCATCTTAACTCTAGGAATCGCATTTTTCACTGGGAGATGGCTTTATAA AAGATGGTATTTGTACAACAGTTTCTTTGATGACTGGCATAACAAGAGCAACAAGGAATGGCCTTGGACATTAGTAGCATTCCAGCGAATAAGTTTCACC AGTAGTGATATACTAGCTTCCATTAAGGAATCCAATATCATCGGCATGGGAGGGACGGGCATTGTTTACAAGGCTGAGGCTCATCGGCCACATGCAATTG TAGCCGTGAAGAAGCTTTGGAGAACAGAAACAGACCTCGAGAATGGCGATGATCTATTCAGAGAAGTGAGTCTCTTAGGGAGGCTTCGGCATAGAAACAT TGTTCGGCTATTAGGGTATCTTCATAATGAAACAGATGTAATGATGGTTTATGAGTACATGCCTAATGGAAACCTTGGAACAGCTTTACACGGTAAAGAA GCTGGAAATTTGTTGGTGGACTGGGTCTCACGCTACAACATAGCAGTTGGAGTTGCACAGGGGCTGAACTACCTCCACCATGATTGTCACCCACCAGTCA TCCACCGTGATATCAAGTCCAACAACATCCTGCTTGATGCAAACCTAGAGGCAAGGATAGCGGATTTCGGTTTGGCAAGGATGATGAGTCATAAGAATGA GACAGTATCAATGGTGGCTGGATCTTATGGTTATATCGCACCTGAATATGGATATACTCTGAAGGTTGATGAAAAGAGCGATATATATAGTTTTGGGGTT GTGCTTTTGGAGCTTCTGACAGGAAAAATGCCACTAGACCCTGCATTTGAAGAATCTGTTGATATTGTTGAATGGGCTCGAAGAAAGATCAGAAACAATA GAGCATTAGAAGAAGCACTGGACCACAGCATAGCAGGACAATACAAACATGTGCAGGAAGAGATGCTTCTTGTTCTCCGCATCGCGATTCTCTGCACCGC TAAACTACCCAAGGACAGACCATCTATGAGGGATGTCATAACAATGCTTGGAGAGGCAAAGCCTCGAAGGAAGAGCACTTGTCATAACAACGTACAAAAT CCTAGAGAAGAGAGGCCAATCTTTAGCACCTCACCTGTAATAGGCCTTCTGTAG
AA sequence Show only first row Show all	>Potri.013G048800.1 pacid=42812023 polypeptide=Potri.013G048800.1.p locus=Potri.013G048800 ID=Potri.013G048800.1.v4.1 annot-version=v4.1 MQTLLLFFDICIAFSLVFVEGVQSVQYDELSTLLLIKSSLIDPSNKLMGWKMPGNAAGNRSPHCNWTGVRCSTKGFVERLDLSNMNLSGIVSYHIQELRS LSFLNISCNGFDSSLPKSLGTLTSLKTIDVSQNNFIGSFPTGLGMASGLTSVNASSNNFSGYLPEDLGNATSLESLDFRGSFFVGSIPSSFKYLQKLKFL GLSGNNLTGRIPREIGQLASLETIILGYNEFEGEIPAEIGNLTSLQYLDLAVGRLSGQIPAELGRLKQLATVYLYKNNFTGKIPPELGNATSLVFLDLSD NQISGEIPVEVAELKNLQLLNLMSNQLKGTIPTKLGELTKLEVLELWKNFLTGPLPENLGQNSPLQWLDVSSNSLSGEIPPGLCHSGNLTKLILFNNSFS GPIPTSLSTCKSLVRVRMQNNLISGTIPVGLGSLPLLQRLELANNNLTGQIPDDIALSTSLSFIDVSGNHLESSLPYGILSVPNLQIFMASNNNFEGQIP DQFQDCPSLSLLELSSNHFSGKIPESIASCEKLVNLNLQNNQFTGEIPKAISTMPTLAILDLSNNSLVGRIPANFGTSPALEMVNLSFNKLEGPVPSNGM LTTINPNDLIGNAGLCGGVLPPCSTTSSASKQQENLRVKHVITGFIIGVSIILTLGIAFFTGRWLYKRWYLYNSFFDDWHNKSNKEWPWTLVAFQRISFT SSDILASIKESNIIGMGGTGIVYKAEAHRPHAIVAVKKLWRTETDLENGDDLFREVSLLGRLRHRNIVRLLGYLHNETDVMMVYEYMPNGNLGTALHGKE AGNLLVDWVSRYNIAVGVAQGLNYLHHDCHPPVIHRDIKSNNILLDANLEARIADFGLARMMSHKNETVSMVAGSYGYIAPEYGYTLKVDEKSDIYSFGV VLLELLTGKMPLDPAFEESVDIVEWARRKIRNNRALEEALDHSIAGQYKHVQEEMLLVLRIAILCTAKLPKDRPSMRDVITMLGEAKPRRKSTCHNNVQN PREERPIFSTSPVIGLL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G08590			Leucine-rich receptor-like pro...		Potri.013G048800 [exp]	0	1
AT1G12600			UDP-N-acetylglucosamine (UAA) ...		Potri.014G077500 [exp]	1.41	0.9392
AT1G65590		HEXO3, ATHEX1	beta-hexosaminidase 3 (.1)		Potri.008G079400 [exp]	6.70	0.9147
AT1G64690		BLT	BRANCHLESS TRICHOMES, branchle...		Potri.001G082600 [exp]	7.41	0.8974
AT4G02290		ATGH9B13	glycosyl hydrolase 9B13 (.1)		Potri.014G126900 [exp]	7.74	0.9475	Pt-PCEL20.2
AT5G20110			Dynein light chain type 1 fami...		Potri.001G124700 [exp]	15.03	0.8644
					Potri.003G165300 [exp]	17.23	0.9307
					Potri.008G104900 [exp]	18.22	0.9296
					Potri.007G016532 [exp]	19.23	0.9292
AT1G35180			TRAM, LAG1 and CLN8 (TLC) lipi...		Potri.005G231600 [exp]	20.66	0.9224
AT1G16060	AP2_ERF	ADAP	ARIA-interacting double AP2 do...		Potri.003G185300 [exp]	21.11	0.8094

Compare expression of checked genes

Potri.013G048800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.